Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.4e-107 392.9 190 100.0
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.4e-107 392.9 190 100.0
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 2.7e-106 388.7 190 97.9
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 2.7e-106 388.7 190 97.9
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 3.5e-106 388.3 190 97.9
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 4.5e-106 387.9 190 97.9
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 1.5e-104 382.9 187 98.4
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 7.2e-104 380.6 185 98.4
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 1.2e-103 379.8 188 95.7
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 2.1e-103 379.0 187 96.8
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 6.1e-103 377.5 188 96.3
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 1.0e-102 376.7 189 96.3
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.0e-102 376.7 184 97.3
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.0e-102 376.7 184 97.3
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 1.4e-102 376.3 188 95.7
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.4e-102 376.3 188 95.7
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.4e-102 376.3 188 95.7
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.4e-102 376.3 188 95.7
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.4e-102 376.3 188 95.7
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 1.8e-102 375.9 184 97.3
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.8e-102 375.9 184 97.8
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 2.3e-102 375.6 185 96.8
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 2.3e-102 375.6 188 94.7
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 2.3e-102 375.6 188 94.1
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 3.0e-102 375.2 188 94.1
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 4.0e-102 374.8 188 93.6
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 4.0e-102 374.8 188 95.2
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 5.2e-102 374.4 185 96.2
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 5.2e-102 374.4 185 96.2
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 5.2e-102 374.4 185 96.2
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 5.2e-102 374.4 185 96.2
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 5.2e-102 374.4 184 95.7
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 8.8e-102 373.6 185 95.7
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 1.2e-101 373.2 184 96.7
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 1.2e-101 373.2 184 96.7
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.5e-101 372.9 188 93.6
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.5e-101 372.9 185 95.7
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.5e-101 372.9 192 94.8
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.5e-101 372.9 192 94.8
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 2.0e-101 372.5 190 93.2
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 2.0e-101 372.5 185 95.7
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 2.0e-101 372.5 188 94.1
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 2.6e-101 372.1 185 96.2
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 2.6e-101 372.1 188 93.6
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 2.6e-101 372.1 185 95.1
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 2.6e-101 372.1 190 93.7
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 2.6e-101 372.1 185 95.7
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.4e-101 371.7 185 95.7
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.4e-101 371.7 185 95.7
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 4.4e-101 371.3 184 96.7
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.4e-101 371.3 192 94.3
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 4.4e-101 371.3 185 95.1
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 4.4e-101 371.3 185 95.7
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.4e-101 371.3 185 95.1
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.7e-101 370.9 184 95.1
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.7e-101 370.9 184 95.1
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 5.7e-101 370.9 188 93.6
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 5.7e-101 370.9 185 94.6
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 5.7e-101 370.9 191 93.7
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.3e-100 369.8 184 95.1
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 1.3e-100 369.8 188 93.1
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.3e-100 369.8 190 92.6
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 1.3e-100 369.8 185 94.1
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 1.7e-100 369.4 191 93.2
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 2.2e-100 369.0 188 92.6
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 2.8e-100 368.6 188 92.6
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.8e-100 368.6 185 94.6
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 4.9e-100 367.9 188 92.0
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 4.9e-100 367.9 184 94.0
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 4.9e-100 367.9 184 96.2
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 6.3e-100 367.5 210 86.7
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 6.3e-100 367.5 184 94.6
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 8.3e-100 367.1 188 92.0
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 8.3e-100 367.1 188 92.0
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 8.3e-100 367.1 187 93.0
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 1.1e-99 366.7 185 94.1
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 1.1e-99 366.7 185 94.6
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 1.1e-99 366.7 185 93.0
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 1.1e-99 366.7 185 94.1
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.1e-99 366.7 184 94.6
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 1.8e-99 365.9 185 93.5
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 1.8e-99 365.9 188 91.5
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 2.4e-99 365.5 188 91.0
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 2.4e-99 365.5 188 91.0
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 2.4e-99 365.5 188 91.0
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 2.4e-99 365.5 188 91.0
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 3.1e-99 365.2 185 93.0
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 3.1e-99 365.2 185 92.4
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 3.1e-99 365.2 189 92.6
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 5.4e-99 364.4 188 91.0
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 7.0e-99 364.0 188 90.4
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 9.1e-99 363.6 190 90.5
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 9.1e-99 363.6 189 92.1
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 9.1e-99 363.6 188 91.5
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 9.1e-99 363.6 188 91.5
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 1.2e-98 363.2 189 90.5
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 1.2e-98 363.2 185 93.0
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 1.6e-98 362.8 185 94.1
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 1.6e-98 362.8 187 92.5
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 2.0e-98 362.5 188 90.4
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 2.0e-98 362.5 188 90.4
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 2.7e-98 362.1 189 90.5
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.7e-98 362.1 185 93.0
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 2.7e-98 362.1 185 92.4
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 3.5e-98 361.7 189 89.9
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 4.5e-98 361.3 188 91.0
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 4.5e-98 361.3 189 89.4
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.5e-98 361.3 185 91.9
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 5.9e-98 360.9 188 89.9
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 7.7e-98 360.5 188 88.8
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 7.7e-98 360.5 188 90.4
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 7.7e-98 360.5 188 90.4
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 7.7e-98 360.5 188 90.4
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.0e-97 360.1 185 91.4
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.0e-97 360.1 185 91.4
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.0e-97 360.1 185 91.4
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 1.0e-97 360.1 191 90.6
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.0e-97 360.1 190 89.5
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.3e-97 359.8 185 91.9
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.7e-97 359.4 185 91.4
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 1.7e-97 359.4 184 92.9
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 2.9e-97 358.6 185 90.3
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 6.6e-97 357.5 188 90.4
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 8.6e-97 357.1 183 90.7
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 1.9e-96 355.9 188 88.8
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 3.3e-96 355.1 191 89.5
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 3.3e-96 355.1 188 88.8
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 7.2e-96 354.0 196 86.7
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 1.2e-95 353.2 188 88.3
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 1.2e-95 353.2 197 86.8
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 2.8e-95 352.1 184 90.2
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 4.7e-95 351.3 181 91.2
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 1.4e-94 349.7 251 72.1
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 1.2e-93 346.7 187 85.6
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 6.3e-92 340.9 182 88.5
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 9.2e-91 337.0 182 86.3
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.3e-88 328.2 190 86.3
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 1.6e-87 326.2 183 80.9
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 2.1e-87 325.9 191 82.2
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 6.1e-87 324.3 182 84.6
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.8e-86 322.8 158 96.2
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.3e-81 305.8 185 80.5
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 2.1e-79 299.3 152 90.1
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 6.4e-76 287.7 141 97.2
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 5.4e-75 284.6 141 95.0
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 6.6e-73 277.7 142 89.4
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 4.3e-72 275.0 139 91.4
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.1e-67 260.4 130 91.5
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.6e-66 256.5 152 83.6
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 2.1e-66 256.1 136 89.0
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 3.9e-65 251.9 163 77.9
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 6.6e-65 251.1 185 71.9
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 6.6e-65 251.1 128 87.5
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.2e-63 244.6 186 68.3
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 2.7e-58 229.2 188 54.3
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 3.3e-56 222.2 187 55.6
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 5.8e-53 211.5 166 67.5
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 1.7e-49 199.9 157 67.5
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.0e-46 188.7 90 94.4
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.4e-45 185.7 115 77.4
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 7.1e-43 177.9 87 92.0
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 9.3e-43 177.6 103 80.6
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.7e-42 176.0 87 90.8
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 4.6e-42 175.3 87 90.8
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.3e-41 173.7 90 87.8
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.8e-41 173.3 87 90.8
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.0e-41 172.6 87 89.7
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.0e-41 172.6 87 89.7
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.8e-38 163.3 87 88.5
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.1e-35 154.1 157 53.5
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.5e-35 151.8 79 87.3
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 9.3e-35 151.0 98 77.6
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 3.9e-33 145.6 99 74.7
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 8.7e-33 144.4 69 88.4
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 1.4e-30 137.1 70 95.7
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 5.7e-16 88.6 44 93.2
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 1.8e-14 83.6 43 95.3
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 7.7e-13 78.2 55 72.7


User provided reference genes

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