Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009131g0010 Nicotiana tabacum HOM05D000190 ORTHO05D022202 1.8e-69 265.8 134 100.0
Nitab4.5_0005102g0020 Nicotiana tabacum HOM05D000190 ORTHO05D000113 8.8e-56 220.3 127 86.6
Nitab4.5_0003303g0010 Nicotiana tabacum HOM05D000190 ORTHO05D022202 3.5e-52 208.4 132 81.8
Nitab4.5_0000864g0220 Nicotiana tabacum HOM05D000190 ORTHO05D000113 1.4e-48 196.4 127 81.1
Nitab4.5_0003303g0030 Nicotiana tabacum HOM05D000190 ORTHO05D022202 7.0e-45 184.1 106 84.9
Nitab4.5_0003303g0040 Nicotiana tabacum HOM05D000190 ORTHO05D022202 1.2e-39 166.8 107 78.5
Solyc02g083720.4 Solanum lycopersicum HOM05D000190 ORTHO05D000113 1.7e-38 162.9 128 70.3
Sopen02g028500 Solanum pennellii HOM05D000190 ORTHO05D000113 4.1e-37 158.3 127 69.3
PGSC0003DMG400003574 Solanum tuberosum HOM05D000190 ORTHO05D000113 3.9e-35 151.8 127 67.7
CAN.G1274.19 Capsicum annuum HOM05D000190 ORTHO05D022202 1.9e-34 149.4 126 65.9
Nitab4.5_0009131g0020 Nicotiana tabacum HOM05D000190 ORTHO05D022202 4.4e-31 138.3 87 79.3
Peaxi162Scf00328g00829 Petunia axillaris HOM05D000190 ORTHO05D000113 9.8e-31 137.1 129 62.8
TAR628G0052 Trochodendron aralioides HOM05D000190 ORTHO05D000113 8.3e-22 107.5 123 46.3
Actinidia28709 Actinidia chinensis HOM05D000190 ORTHO05D000113 3.5e-20 102.1 123 48.8
MSTRG.2722 Avicennia marina HOM05D000190 ORTHO05D000113 6.0e-20 101.3 118 49.2
Hma1.2p1_0315F.1_g122250 Hydrangea macrophylla HOM05D000190 ORTHO05D000113 2.3e-19 99.4 116 49.1
Haze_03746 Corylus avellana HOM05D000190 ORTHO05D000113 1.2e-17 93.6 123 43.9
MD02G1129400 Malus domestica HOM05D000190 ORTHO05D000113 1.6e-17 93.2 124 42.7
GSVIVG01018757001 Vitis vinifera HOM05D000190 ORTHO05D000113 2.8e-17 92.4 115 45.2
Cfa006987 Carpinus fangiana HOM05D000190 ORTHO05D000113 3.1e-16 89.0 123 42.3
Migut.H02163 Erythranthe guttata HOM05D000190 ORTHO05D000113 5.2e-16 88.2 86 59.3
Nn5g30736 Nelumbo nucifera HOM05D000190 ORTHO05D000113 6.8e-16 87.8 106 47.2
Potri.005G111400 Populus trichocarpa HOM05D000190 ORTHO05D000113 2.0e-15 86.3 120 39.2
PGR102G2681 Punica granatum HOM05D000190 ORTHO05D000113 2.0e-15 86.3 72 56.9
Cc07_g10930 Coffea canephora HOM05D000190 ORTHO05D000113 7.6e-15 84.3 121 42.1
Prupe.7G170200 Prunus persica HOM05D000190 ORTHO05D000113 1.3e-14 83.6 121 38.8
Sabra05G0091200 Salix brachista HOM05D000190 ORTHO05D000113 4.9e-14 81.6 122 39.3
QL06p050881 Quercus lobata HOM05D000190 ORTHO05D000113 6.4e-14 81.3 123 39.8
Duzib187G1455 Durio zibethinus HOM05D000190 ORTHO05D000113 1.9e-13 79.7 89 48.3
Lj2g0016002 Lotus japonicus HOM05D000190 ORTHO05D000113 2.4e-13 79.3 88 48.9
SalBow3G2325 Salvia bowleyana HOM05D000190 ORTHO05D000113 3.2e-13 79.0 91 48.4
Dinv40106 Davidia involucrata HOM05D000190 ORTHO05D000113 7.1e-13 77.8 52 69.2
Atru.chr3.825 Acer truncatum HOM05D000190 ORTHO05D000113 1.6e-12 76.6 90 44.4
Atru.chr3.835 Acer truncatum HOM05D000190 ORTHO05D000113 1.6e-12 76.6 90 44.4
EL10Ac6g15489 Beta vulgaris HOM05D000190 ORTHO05D000113 1.6e-12 76.6 71 50.7
Eucgr.J02452 Eucalyptus grandis HOM05D000190 ORTHO05D000113 2.1e-12 76.3 75 49.3
ECA246G4662 Erigeron canadensis HOM05D000190 ORTHO05D000113 2.7e-12 75.9 125 38.4
Thecc.01G016200 Theobroma cacao HOM05D000190 ORTHO05D000113 2.7e-12 75.9 84 50.0
HanXRQChr15g0483971 Helianthus annuus HOM05D000190 ORTHO05D000113 3.5e-12 75.5 76 57.9
PSO675G4380 Papaver somniferum HOM05D000190 ORTHO05D000113 4.6e-12 75.1 87 50.6
FvH4_1g11630 Fragaria vesca HOM05D000190 ORTHO05D000113 6.0e-12 74.7 86 46.5
PSO541G3931 Papaver somniferum HOM05D000190 ORTHO05D000113 6.0e-12 74.7 85 51.8
DCAR_029261 Daucus carota HOM05D000190 ORTHO05D000113 1.0e-11 73.9 88 45.5
FAN19G0120 Fragaria x ananassa HOM05D000190 ORTHO05D000113 1.0e-11 73.9 86 44.2
FAN26G2330 Fragaria x ananassa HOM05D000190 ORTHO05D000113 1.3e-11 73.6 86 43.0
RcHm_v2.0_Chr2g0099221 Rosa chinensis HOM05D000190 ORTHO05D000113 1.3e-11 73.6 91 48.4
CANSAT25G0315 Cannabis sativa HOM05D000190 ORTHO05D000113 1.7e-11 73.2 97 45.4
ClCG10G000650 Citrullus lanatus HOM05D000190 ORTHO05D000113 1.7e-11 73.2 68 57.4
CsaV3_3G000730 Cucumis sativus L. HOM05D000190 ORTHO05D000113 1.7e-11 73.2 88 48.9
Dinv24308 Davidia involucrata HOM05D000190 ORTHO05D000113 1.7e-11 73.2 105 40.0
Glyma.01G165200 Glycine max HOM05D000190 ORTHO05D000113 1.7e-11 73.2 88 50.0
CiPaw.07G060100 Carya illinoinensis HOM05D000190 ORTHO05D000113 2.3e-11 72.8 119 41.2
FAN28G1705 Fragaria x ananassa HOM05D000190 ORTHO05D000113 2.3e-11 72.8 86 43.0
Phvul.002G107600 Phaseolus vulgaris HOM05D000190 ORTHO05D000113 3.0e-11 72.4 69 58.0
VMungo1215G1671 Vigna mungo HOM05D000190 ORTHO05D000113 3.0e-11 72.4 69 58.0
MBI12_g10428_MAGBIO Magnolia biondii HOM05D000190 ORTHO05D000113 3.9e-11 72.0 88 42.0
Medtr5g022400 Medicago truncatula HOM05D000190 ORTHO05D000113 5.1e-11 71.6 69 53.6
FAN23G0600 Fragaria x ananassa HOM05D000190 ORTHO05D000113 6.6e-11 71.2 86 41.9
AUR62029482 Chenopodium quinoa HOM05D000190 ORTHO05D000113 8.6e-11 70.9 88 39.8
Aqoxy6G02244 Aquilegia oxysepala HOM05D000190 ORTHO05D000113 1.5e-10 70.1 73 53.4
Glyma.11G078000 Glycine max HOM05D000190 ORTHO05D000113 1.5e-10 70.1 88 47.7
Lalb_Chr05g0212341 Lupinus albus HOM05D000190 ORTHO05D000113 1.5e-10 70.1 69 50.7
DCAR_006691 Daucus carota HOM05D000190 ORTHO05D000113 1.9e-10 69.7 113 39.8
Rhsim11G0127200 Rhododendron simsii HOM05D000190 ORTHO05D000113 2.5e-10 69.3 88 39.8
ATR1134G133 Amborella trichopoda HOM05D000190 ORTHO05D000113 3.3e-10 68.9 128 33.6
AUR62003354 Chenopodium quinoa HOM05D000190 ORTHO05D000113 4.3e-10 68.6 88 39.8
Ciclev10025325m.g Citrus clementina HOM05D000190 ORTHO05D000113 5.6e-10 68.2 123 30.1
Gohir.D11G181400 Gossypium hirsutum HOM05D000190 ORTHO05D000113 7.3e-10 67.8 85 44.7
Lj5C255T7 Lonicera japonica HOM05D000190 ORTHO05D000113 7.3e-10 67.8 88 42.0
TWI09G1562 Tripterygium wilfordii HOM05D000190 ORTHO05D000113 7.3e-10 67.8 85 44.7
COL.COLO4_22446 Corchorus olitorius HOM05D000190 ORTHO05D000113 9.6e-10 67.4 49 65.3
Manes.02G106500 Manihot esculenta HOM05D000190 ORTHO05D000113 9.6e-10 67.4 47 57.4
CAN.G1.40 Capsicum annuum HOM05D000190 ORTHO05D000113 1.2e-09 67.0 106 40.6
Eucgr.I02745 Eucalyptus grandis HOM05D000190 ORTHO05D000113 1.2e-09 67.0 125 36.8
Gorai.007G193200 Gossypium raimondii HOM05D000190 ORTHO05D000113 1.2e-09 67.0 85 44.7
TPR.G153 Trifolium pratense HOM05D000190 ORTHO05D000113 1.2e-09 67.0 67 52.2
Gohir.A03G192800 Gossypium hirsutum HOM05D000190 ORTHO05D000113 1.6e-09 66.6 103 38.8
CiPaw.05G050200 Carya illinoinensis HOM05D000190 ORTHO05D000113 2.1e-09 66.2 116 35.3
Cc02_g22820 Coffea canephora HOM05D000190 ORTHO05D000113 2.1e-09 66.2 88 42.0
Gohir.D02G213800 Gossypium hirsutum HOM05D000190 ORTHO05D000113 2.1e-09 66.2 77 45.5
Gorai.005G241700 Gossypium raimondii HOM05D000190 ORTHO05D000113 2.1e-09 66.2 103 37.9
Atru.chr6.677 Acer truncatum HOM05D000190 ORTHO05D000113 3.6e-09 65.5 89 42.7
Duzib052G0323 Durio zibethinus HOM05D000190 ORTHO05D000113 3.6e-09 65.5 94 42.6
Prupe.1G574000 Prunus persica HOM05D000190 ORTHO05D000113 4.7e-09 65.1 76 46.1
MELO3C019435.2 Cucumis melo HOM05D000190 ORTHO05D000113 6.2e-09 64.7 103 40.8
Gohir.A11G174200 Gossypium hirsutum HOM05D000190 ORTHO05D000113 6.2e-09 64.7 75 46.7
PGSC0003DMG400018975 Solanum tuberosum HOM05D000190 ORTHO05D000113 6.2e-09 64.7 106 40.6
Thecc.02G089800 Theobroma cacao HOM05D000190 ORTHO05D000113 6.2e-09 64.7 90 38.9
GSVIVG01023344001 Vitis vinifera HOM05D000190 ORTHO05D000113 6.2e-09 64.7 90 42.2
Hma1.2p1_1108F.1_g257780 Hydrangea macrophylla HOM05D000190 ORTHO05D000113 8.1e-09 64.3 76 46.1
Lsat_1_v5_gn_3_73200 Lactuca sativa HOM05D000190 ORTHO05D000113 8.1e-09 64.3 74 50.0
VMungo0540G1527 Vigna mungo HOM05D000190 ORTHO05D000113 8.1e-09 64.3 90 41.1
Oeu034118.1 Olea europaea HOM05D000190 ORTHO05D000113 1.1e-08 63.9 88 43.2
Ca_00057_v3 Cicer arietinum L. HOM05D000190 ORTHO05D000113 1.4e-08 63.5 76 43.4
QL02p099495 Quercus lobata HOM05D000190 ORTHO05D000113 1.4e-08 63.5 77 45.5
Solyc10g044510.2 Solanum lycopersicum HOM05D000190 ORTHO05D000113 1.4e-08 63.5 88 43.2
Sopen10g013100 Solanum pennellii HOM05D000190 ORTHO05D000113 1.4e-08 63.5 88 43.2
CSS0001730 Camellia sinensis var. sinensis HOM05D000190 ORTHO05D000113 1.8e-08 63.2 90 35.6
ClCG05G009500 Citrullus lanatus HOM05D000190 ORTHO05D000113 1.8e-08 63.2 102 38.2
CsaV3_3G019230 Cucumis sativus L. HOM05D000190 ORTHO05D000113 1.8e-08 63.2 94 40.4
Glyma.08G188600 Glycine max HOM05D000190 ORTHO05D000113 1.8e-08 63.2 112 37.5
PSO170G4559 Papaver somniferum HOM05D000190 ORTHO05D000113 1.8e-08 63.2 109 38.5
CANSAT11G1779 Cannabis sativa HOM05D000190 ORTHO05D000113 2.4e-08 62.8 76 43.4
HanXRQChr03g0065251 Helianthus annuus HOM05D000190 ORTHO05D000113 2.4e-08 62.8 100 40.0
Nitab4.5_0004129g0050 Nicotiana tabacum HOM05D000190 ORTHO05D000113 2.4e-08 62.8 106 41.5
SalBow3G0183 Salvia bowleyana HOM05D000190 ORTHO05D000113 2.4e-08 62.8 76 46.1
PSO782G0842 Papaver somniferum HOM05D000190 ORTHO05D000113 3.1e-08 62.4 109 38.5
Zm00001eb201210 Zea mays HOM05D000190 ORTHO05D000113 3.1e-08 62.4 114 35.1
Sed0012752 Sechium edule HOM05D000190 ORTHO05D000113 4.0e-08 62.0 92 41.3
SEGI_29250 Sequoiadendron giganteum HOM05D000190 ORTHO05D000113 4.0e-08 62.0 106 37.7
TPR.G10517 Trifolium pratense HOM05D000190 ORTHO05D038925 4.0e-08 62.0 115 36.5
vmacro01740 Vaccinium macrocarpon HOM05D000190 ORTHO05D000113 4.0e-08 62.0 88 37.5
Glyma.12G169332 Glycine max HOM05D000190 ORTHO05D000113 5.2e-08 61.6 74 43.2
Phvul.006G216900 Phaseolus vulgaris HOM05D000190 ORTHO05D000113 5.2e-08 61.6 90 38.9
Lalb_Chr18g0060981 Lupinus albus HOM05D000190 ORTHO05D000113 6.8e-08 61.2 85 40.0
TAR628G0556 Trochodendron aralioides HOM05D000190 ORTHO05D000113 6.8e-08 61.2 110 36.4
Lsat_1_v5_gn_9_120900 Lactuca sativa HOM05D000190 ORTHO05D000113 8.9e-08 60.8 119 37.0
SGA_v2.0_scaffold42G15926 Striga asiatica HOM05D000190 ORTHO05D000113 8.9e-08 60.8 88 42.0
EL10Ac6g14055 Beta vulgaris HOM05D000190 ORTHO05D000113 1.2e-07 60.5 118 36.4
Manes.07G020200 Manihot esculenta HOM05D000190 ORTHO05D000113 1.2e-07 60.5 87 41.4
Migut.N01052 Erythranthe guttata HOM05D000190 ORTHO05D000113 2.6e-07 59.3 89 40.4
Os11g0181400 Oryza sativa ssp. japonica HOM05D000190 ORTHO05D000113 2.6e-07 59.3 84 41.7
Sabra01G0165700 Salix brachista HOM05D000190 ORTHO05D000113 2.6e-07 59.3 90 44.4
Cpa.g.sc6.272 Carica papaya HOM05D000190 ORTHO05D000113 3.4e-07 58.9 112 35.7
Medtr2g006280 Medicago truncatula HOM05D000190 ORTHO05D000113 3.4e-07 58.9 89 41.6
Nn5g27533 Nelumbo nucifera HOM05D000190 ORTHO05D000113 3.4e-07 58.9 90 36.7
Ciclev10003889m.g Citrus clementina HOM05D000190 ORTHO05D000113 4.4e-07 58.5 77 42.9
COL.COLO4_11762 Corchorus olitorius HOM05D000190 ORTHO05D000113 4.4e-07 58.5 89 37.1
Psat3g090000 Pisum sativum HOM05D000190 ORTHO05D000113 4.4e-07 58.5 89 39.3
FAN08G1394 Fragaria x ananassa HOM05D000190 ORTHO05D000113 5.8e-07 58.2 76 46.1
Potri.004G218500 Populus trichocarpa HOM05D000190 ORTHO05D000113 5.8e-07 58.2 77 44.2
Sp1g09700 Schrenkiella parvula HOM05D000190 ORTHO05D000113 5.8e-07 58.2 77 45.5
FvH4_5g28810 Fragaria vesca HOM05D000190 ORTHO05D000113 7.6e-07 57.8 76 46.1
FAN04G2027 Fragaria x ananassa HOM05D000190 ORTHO05D000113 7.6e-07 57.8 76 46.1
FAN18G3244 Fragaria x ananassa HOM05D000190 ORTHO05D000113 7.6e-07 57.8 76 46.1
PGR142G0399 Punica granatum HOM05D000190 ORTHO05D000113 7.6e-07 57.8 98 39.8
RcHm_v2.0_Chr7g0221021 Rosa chinensis HOM05D000190 ORTHO05D000113 7.6e-07 57.8 76 46.1
arahy.Tifrunner.gnm1.ann1.SY37LP Arachis hypogaea HOM05D000190 ORTHO05D000113 1.3e-06 57.0 113 36.3
TPR.G2093 Trifolium pratense HOM05D000190 ORTHO05D000113 1.3e-06 57.0 89 41.6
arahy.Tifrunner.gnm1.ann1.GMF3XI Arachis hypogaea HOM05D000190 ORTHO05D000113 2.2e-06 56.2 87 40.2
Dinv40105 Davidia involucrata HOM05D000190 ORTHO05D000113 2.2e-06 56.2 35 68.6
Thhalv10007202m.g Eutrema salsugineum HOM05D000190 ORTHO05D000113 2.2e-06 56.2 77 45.5
A09p64800 Brassica napus HOM05D000190 ORTHO05D000113 2.9e-06 55.8 108 39.8
C08p48390 Brassica napus HOM05D000190 ORTHO05D000113 2.9e-06 55.8 108 39.8
BolC8t52378H Brassica oleracea HOM05D000190 ORTHO05D000113 2.9e-06 55.8 108 39.8
BraA09t41815Z Brassica rapa HOM05D000190 ORTHO05D000113 2.9e-06 55.8 108 39.8
MBI17_g01787_MAGBIO Magnolia biondii HOM05D000190 ORTHO05D000113 2.9e-06 55.8 128 32.8
Aqoxy6G00059 Aquilegia oxysepala HOM05D000190 ORTHO05D000113 3.8e-06 55.5 130 32.3
FAN13G1232 Fragaria x ananassa HOM05D000190 ORTHO05D000113 3.8e-06 55.5 76 44.7
THA.LOC104809616 Tarenaya hassleriana HOM05D000190 ORTHO05D000113 3.8e-06 55.5 131 30.5
TWI59G1448 Tripterygium wilfordii HOM05D000190 ORTHO05D000113 3.8e-06 55.5 91 40.7
CARHR011210 Cardamine hirsuta HOM05D000190 ORTHO05D000113 6.4e-06 54.7 85 40.0
ECA240G2055 Erigeron canadensis HOM05D000190 ORTHO05D000113 6.4e-06 54.7 88 38.6
AT1G11000 Arabidopsis thaliana HOM05D000190 ORTHO05D000113 8.4e-06 54.3 85 40.0
Carub.0001s1058 Capsella rubella HOM05D000190 ORTHO05D000113 8.4e-06 54.3 85 40.0


User provided reference genes

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