Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 0.0e+00 1233.8 677 100.0
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.5e-289 999.2 722 81.7
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 9.0e-282 973.4 739 76.5
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 1.6e-278 962.6 739 76.0
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.1e-260 903.3 740 71.6
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.4e-257 891.7 740 70.7
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.2e-256 889.0 740 70.5
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 1.2e-254 883.2 708 73.3
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.2e-247 858.6 740 69.3
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 1.0e-245 853.6 709 70.1
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 3.0e-245 852.0 739 67.9
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 3.9e-245 851.7 736 67.7
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 6.7e-245 850.9 690 69.9
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 6.7e-245 850.9 801 63.8
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 1.1e-244 850.1 740 66.2
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 1.5e-244 849.7 690 69.7
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.5e-244 849.7 740 68.5
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.5e-244 849.7 801 63.7
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 2.6e-244 849.0 740 67.3
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 4.4e-244 848.2 690 70.3
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 9.7e-244 847.0 721 67.7
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 2.2e-243 845.9 740 66.9
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.2e-243 844.0 774 66.5
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 1.1e-242 843.6 740 65.8
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 2.4e-242 842.4 739 66.3
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 2.4e-242 842.4 740 66.9
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 4.1e-242 841.6 690 69.9
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 7.0e-242 840.9 661 72.2
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 4.5e-241 838.2 692 68.8
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 5.9e-241 837.8 690 69.7
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 1.0e-240 837.0 690 69.0
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.7e-240 836.3 692 69.4
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.9e-239 832.8 690 69.3
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 4.2e-239 831.6 734 67.6
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 4.2e-239 831.6 736 66.0
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.1e-238 829.3 736 65.9
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.7e-238 828.9 690 69.3
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 3.6e-238 828.6 741 65.0
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.6e-238 828.6 734 66.9
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 4.7e-238 828.2 737 67.0
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 6.1e-238 827.8 707 68.3
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 8.0e-238 827.4 734 67.3
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 8.0e-238 827.4 732 66.3
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 8.0e-238 827.4 740 65.0
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 8.8e-237 823.9 746 64.9
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 1.2e-236 823.5 744 65.5
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 4.4e-236 821.6 732 65.7
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 2.8e-235 818.9 734 66.9
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 2.8e-235 818.9 741 64.4
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 2.8e-235 818.9 722 66.1
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 4.8e-235 818.1 740 65.3
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 4.8e-235 818.1 732 65.3
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 6.3e-235 817.8 744 64.1
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 8.2e-235 817.4 737 64.5
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 8.2e-235 817.4 694 67.3
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.1e-234 817.0 741 66.0
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 3.1e-234 815.5 742 64.7
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 4.1e-234 815.1 742 65.5
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 4.1e-234 815.1 695 67.3
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 4.1e-234 815.1 739 65.4
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 3.5e-233 812.0 741 64.1
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.0e-232 810.4 739 65.9
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 2.2e-232 809.3 688 68.2
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 1.9e-231 806.2 745 63.9
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 4.2e-231 805.1 734 65.7
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 4.2e-231 805.1 734 65.9
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 5.5e-231 804.7 692 67.8
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 2.1e-230 802.7 736 64.4
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 3.6e-230 802.0 671 67.7
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 6.1e-230 801.2 721 64.9
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 6.1e-230 801.2 740 65.7
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.8e-229 799.7 735 66.3
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 6.8e-229 797.7 694 66.0
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 1.2e-228 797.0 629 73.3
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 1.5e-228 796.6 775 61.8
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 2.0e-228 796.2 694 65.9
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.0e-228 796.2 783 62.2
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 2.6e-228 795.8 712 65.6
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 3.4e-228 795.4 725 65.4
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 9.8e-228 793.9 682 65.7
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 1.7e-227 793.1 768 61.7
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 2.4e-226 789.3 671 67.4
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 4.1e-226 788.5 673 66.6
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 4.1e-226 788.5 732 64.1
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 5.4e-226 788.1 731 64.0
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.2e-225 786.9 694 65.4
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 1.2e-225 786.9 694 65.0
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 1.6e-225 786.6 673 66.4
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 3.5e-225 785.4 740 64.1
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.7e-224 783.1 736 62.9
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 1.7e-224 783.1 740 63.2
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 7.2e-223 777.7 685 66.4
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.6e-222 776.5 697 64.7
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 5.2e-221 771.5 671 67.8
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 1.2e-220 770.4 713 64.7
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 3.4e-220 768.8 695 64.3
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 3.4e-220 768.8 695 64.3
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 4.1e-218 761.9 728 62.1
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 1.5e-215 753.4 748 61.2
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 2.8e-214 749.2 695 63.6
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 4.7e-214 748.4 738 61.5
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 1.2e-212 743.8 1071 47.7
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 2.6e-212 742.7 690 64.8
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 7.5e-212 741.1 740 60.3
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 9.8e-212 740.7 690 63.8
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.5e-207 726.9 690 62.9
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.5e-207 726.9 690 63.0
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 1.3e-203 713.8 672 62.2
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 1.9e-202 709.9 683 60.8
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 2.0e-201 706.4 687 61.3
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 5.0e-200 701.8 690 60.0
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 5.6e-199 698.4 677 61.7
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 8.9e-197 691.0 757 57.5
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 2.2e-187 659.8 605 64.3
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 2.5e-183 646.4 689 57.5
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.2e-180 637.5 685 55.8
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 1.4e-178 630.6 688 54.2
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 2.1e-174 616.7 443 81.3
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.2e-169 600.9 678 53.8
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.6e-135 486.9 420 68.1
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 3.1e-133 479.9 700 44.9
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 2.0e-111 407.5 369 67.5
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 4.2e-106 389.8 403 58.6
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 5.5e-106 389.4 624 42.6
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.9e-93 347.8 348 56.9
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 6.4e-78 296.2 520 42.9
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 5.4e-77 293.1 294 61.2
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 1.9e-74 284.6 529 42.0
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.2e-60 238.8 735 28.8
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 1.1e-56 225.7 129 93.0
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 8.7e-43 179.5 127 74.0
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.1e-42 179.1 135 71.9
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.5e-42 177.9 158 63.3
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.3e-42 177.6 94 96.8
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 2.4e-40 171.4 784 28.8
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.4e-37 162.2 209 49.3
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 8.5e-30 136.3 93 84.9
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 4.7e-20 104.0 712 22.3
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.3e-19 101.7 71 81.7
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 2.0e-18 98.6 637 23.9
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 3.0e-11 74.7 124 46.8
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 7.4e-10 70.1 97 52.6
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 9.7e-10 69.7 199 37.2
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 2.0e-07 62.0 53 64.2
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 2.6e-07 61.6 97 48.5


User provided reference genes

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