Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 2.8e-123 445.3 226 100.0
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 1.8e-93 346.3 227 82.8
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 3.4e-76 288.9 230 72.2
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 2.9e-75 285.8 232 71.6
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 6.4e-75 284.6 233 71.2
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 7.1e-74 281.2 228 69.3
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 2.7e-73 279.3 227 70.0
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 2.1e-57 226.5 231 55.8
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 6.0e-57 224.9 223 56.1
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 1.8e-56 223.4 232 53.9
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 2.3e-56 223.0 239 54.4
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 3.0e-56 222.6 233 54.1
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 6.7e-56 221.5 239 52.3
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 8.7e-56 221.1 226 55.3
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 1.1e-55 220.7 231 54.5
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 1.1e-55 220.7 229 54.1
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 1.5e-55 220.3 227 54.2
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 1.5e-55 220.3 237 53.2
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 2.5e-55 219.5 234 52.6
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 3.3e-55 219.2 226 54.4
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 3.3e-55 219.2 232 53.9
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 7.4e-55 218.0 237 54.0
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 1.6e-54 216.9 236 53.0
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 2.1e-54 216.5 234 53.0
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 2.8e-54 216.1 234 53.0
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 3.7e-54 215.7 237 52.7
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 3.7e-54 215.7 223 54.7
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 3.7e-54 215.7 234 53.0
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 1.1e-53 214.2 239 50.2
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 1.1e-53 214.2 231 51.5
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.4e-53 213.8 234 52.6
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 4.1e-53 212.2 200 59.0
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.1e-53 212.2 239 51.5
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 1.2e-52 210.7 232 52.2
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 1.2e-52 210.7 234 52.6
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 1.5e-52 210.3 239 50.6
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 1.5e-52 210.3 234 52.6
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 3.4e-52 209.1 254 48.8
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 3.4e-52 209.1 239 50.2
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 1.0e-51 207.6 245 50.2
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 3.8e-51 205.7 232 51.7
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 4.2e-50 202.2 236 50.0
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 4.2e-50 202.2 279 46.2
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 9.3e-50 201.1 238 50.0
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 9.3e-50 201.1 233 52.4
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 9.3e-50 201.1 244 49.6
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 9.3e-50 201.1 226 51.8
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 3.5e-49 199.1 186 58.1
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 4.6e-49 198.7 242 47.5
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 7.9e-49 198.0 268 45.9
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 7.9e-49 198.0 256 46.5
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 1.0e-48 197.6 232 49.6
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 1.0e-48 197.6 136 77.2
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 1.3e-48 197.2 224 49.6
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 1.3e-48 197.2 224 49.6
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 2.3e-48 196.4 235 49.8
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 2.3e-48 196.4 213 50.7
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 3.0e-48 196.1 245 46.9
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 3.0e-48 196.1 246 50.8
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.5e-47 193.7 247 47.8
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 1.5e-47 193.7 241 47.7
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.5e-47 193.0 237 49.8
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 2.5e-47 193.0 253 45.5
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 3.3e-47 192.6 261 47.9
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 4.8e-46 188.7 234 47.4
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 6.3e-46 188.3 228 49.1
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 2.4e-45 186.4 224 47.8
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 4.1e-45 185.7 271 47.2
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 6.9e-45 184.9 239 47.3
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 9.0e-45 184.5 229 47.2
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 1.5e-44 183.7 228 48.7
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 2.0e-44 183.3 243 48.1
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 3.8e-43 179.1 223 46.6
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 3.8e-43 179.1 223 46.6
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 6.5e-43 178.3 226 45.6
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 1.1e-42 177.6 224 46.0
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 1.9e-42 176.8 240 44.6
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 2.5e-42 176.4 238 44.5
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 2.5e-42 176.4 227 46.3
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 9.4e-42 174.5 208 50.5
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 1.2e-41 174.1 223 45.7
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 2.7e-41 172.9 223 45.7
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 4.6e-41 172.2 234 44.9
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 6.1e-41 171.8 225 45.8
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 2.3e-40 169.9 155 58.1
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 5.7e-39 165.2 236 44.9
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 7.4e-39 164.9 223 42.2
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 1.1e-37 161.0 237 43.5
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 1.4e-37 160.6 226 44.2
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 3.1e-37 159.5 260 39.6
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 9.1e-37 157.9 229 44.5
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 7.7e-36 154.8 233 41.6
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 3.0e-32 142.9 144 56.2
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 8.8e-32 141.4 248 41.5
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 4.5e-28 129.0 225 38.2
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 5.0e-27 125.6 148 50.0
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 8.0e-25 118.2 133 51.1
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.4e-24 117.5 128 50.8
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 1.5e-23 114.0 127 53.5
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 4.4e-23 112.5 81 63.0
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 9.1e-21 104.8 106 53.8
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 8.0e-17 91.7 112 44.6
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 1.2e-15 87.8 96 51.0
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 2.0e-15 87.0 55 72.7
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 5.7e-15 85.5 96 46.9
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.0e-11 74.7 47 68.1
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 3.2e-10 69.7 102 34.3
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 3.2e-10 69.7 234 27.8
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 2.1e-09 67.0 102 34.3
TPR.G23301 Trifolium pratense HOM05D003946 ORTHO05D004485 6.8e-08 62.0 98 36.7
Medtr7g059150 Medicago truncatula HOM05D003946 ORTHO05D004485 1.2e-07 61.2 98 35.7
Phvul.008G125199 Phaseolus vulgaris HOM05D003946 ORTHO05D004485 1.2e-07 61.2 98 35.7
VMungo1383G2940 Vigna mungo HOM05D003946 ORTHO05D004485 1.2e-07 61.2 98 35.7
Lalb_Chr07g0193951 Lupinus albus HOM05D003946 ORTHO05D004485 2.6e-07 60.1 98 34.7
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.4e-07 59.3 102 38.2
Lj4g0012280 Lotus japonicus HOM05D003946 ORTHO05D004485 5.7e-07 58.9 129 31.8
Ca_01529_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 1.7e-06 57.4 132 31.1
HPP92_010866 Vanilla planifolia HOM05D000868 ORTHO05D000711 1.7e-06 57.4 117 29.9
RcHm_v2.0_Chr3g0448591 Rosa chinensis HOM05D000868 ORTHO05D000711 2.8e-06 56.6 88 33.0
Psat0s1858g0040 Pisum sativum HOM05D000868 ORTHO05D000711 3.7e-06 56.2 117 29.1
Ca_01517_v3 Cicer arietinum L. HOM05D003946 ORTHO05D004485 4.9e-06 55.8 132 30.3
Glyma.18G174600 Glycine max HOM05D003946 ORTHO05D004485 4.9e-06 55.8 100 34.0
Psat5g270480 Pisum sativum HOM05D003946 ORTHO05D004485 4.9e-06 55.8 98 33.7
Dinv41322 Davidia involucrata HOM05D003946 ORTHO05D004485 6.3e-06 55.5 118 31.4
Medtr2g090135 Medicago truncatula HOM05D003946 ORTHO05D004485 6.3e-06 55.5 98 33.7


User provided reference genes

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