Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.0e-167 592.4 313 100.0
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 2.4e-160 568.9 313 96.2
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 2.9e-134 482.3 315 82.5
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 7.9e-132 474.2 315 82.2
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 1.8e-131 473.0 313 82.1
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 2.3e-131 472.6 309 82.2
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 1.1e-128 463.8 315 81.0
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 9.1e-128 460.7 321 78.5
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 3.2e-117 425.6 304 76.0
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 1.6e-116 423.3 278 79.5
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 2.3e-115 419.5 317 73.8
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.1e-114 417.2 268 79.9
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 2.0e-114 416.4 328 70.4
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 4.4e-114 415.2 313 72.8
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 1.3e-113 413.7 315 73.0
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 2.8e-113 412.5 315 71.4
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 6.3e-113 411.4 313 72.2
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 8.2e-113 411.0 312 71.8
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 1.4e-112 410.2 321 71.0
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 1.2e-111 407.1 318 69.5
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 1.6e-111 406.8 319 71.2
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 3.5e-111 405.6 313 69.3
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 4.5e-111 405.2 319 71.5
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 2.9e-110 402.5 313 69.6
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 6.5e-110 401.4 318 69.8
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 1.9e-109 399.8 265 77.7
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 3.2e-109 399.1 315 70.2
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 7.2e-109 397.9 278 76.6
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 4.7e-108 395.2 299 71.9
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 4.7e-108 395.2 275 74.9
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 5.2e-107 391.7 318 68.9
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 5.2e-107 391.7 316 69.9
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 6.7e-107 391.3 319 68.3
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.5e-106 390.2 303 71.3
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 1.5e-106 390.2 316 68.0
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 2.0e-106 389.8 315 67.6
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 2.0e-106 389.8 326 66.0
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 3.3e-106 389.0 310 68.7
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 3.3e-106 389.0 315 67.0
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 4.4e-106 388.7 288 70.5
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 5.7e-106 388.3 288 70.5
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 7.5e-106 387.9 318 67.3
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 7.5e-106 387.9 323 67.5
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.3e-105 387.1 303 67.3
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 4.8e-105 385.2 303 70.3
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 8.2e-105 384.4 302 67.2
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 2.4e-104 382.9 318 69.2
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 7.0e-104 381.3 317 68.1
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 4.5e-103 378.6 315 68.3
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 1.3e-102 377.1 286 69.6
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 2.2e-102 376.3 250 79.6
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 2.9e-102 375.9 279 70.6
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.9e-102 375.9 248 77.8
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 5.0e-102 375.2 289 71.6
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 8.5e-102 374.4 299 67.9
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 1.1e-101 374.0 250 77.6
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 1.9e-101 373.2 284 69.4
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 1.9e-101 373.2 398 55.8
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 5.5e-101 371.7 315 65.1
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 2.7e-100 369.4 301 67.8
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 3.6e-100 369.0 317 64.0
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 8.0e-100 367.9 319 64.3
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 1.8e-99 366.7 315 63.8
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 3.0e-99 365.9 269 71.4
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 3.0e-99 365.9 319 64.3
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 4.0e-99 365.5 252 73.8
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 1.2e-98 364.0 319 64.3
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 3.4e-98 362.5 317 64.4
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 4.4e-98 362.1 313 65.2
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 5.7e-98 361.7 309 65.7
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 7.5e-98 361.3 236 78.8
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 2.8e-97 359.4 317 64.7
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 3.7e-97 359.0 306 68.0
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 4.8e-97 358.6 309 66.0
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 2.4e-96 356.3 266 68.0
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 2.4e-96 356.3 318 65.4
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 7.0e-96 354.8 268 69.0
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 1.2e-95 354.0 314 62.7
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 2.0e-95 353.2 290 63.8
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 4.5e-95 352.1 298 65.1
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 1.7e-94 350.1 252 72.2
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 6.6e-94 348.2 329 60.5
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 1.5e-93 347.1 328 61.3
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 3.3e-93 345.9 300 65.3
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 4.2e-93 345.5 328 61.0
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 2.1e-92 343.2 310 62.9
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 1.4e-91 340.5 291 65.3
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 8.9e-91 337.8 314 61.5
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 7.5e-90 334.7 229 76.9
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 9.8e-90 334.3 293 60.4
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 1.7e-89 333.6 271 66.8
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 9.2e-88 327.8 309 61.8
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 3.5e-87 325.9 229 71.6
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 7.8e-87 324.7 237 70.9
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 7.8e-87 324.7 250 66.8
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 1.7e-86 323.6 227 73.1
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 5.6e-85 318.5 186 86.0
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 4.0e-83 312.4 318 58.8
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 8.9e-83 311.2 229 72.5
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.4e-80 303.9 239 69.5
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 5.6e-77 292.0 310 57.4
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 4.0e-75 285.8 292 56.8
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 1.2e-71 274.2 321 54.8
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 2.3e-67 260.0 188 71.8
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 3.1e-67 259.6 258 54.3
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 1.9e-64 250.4 216 64.8
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 2.4e-64 250.0 262 56.9
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 8.1e-60 235.0 254 50.8
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 1.8e-59 233.8 205 63.4
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 1.2e-55 221.1 252 49.6
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 3.3e-53 213.0 193 60.6
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 2.1e-52 210.3 323 44.0
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 3.3e-45 186.4 131 72.5
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 2.8e-44 183.3 174 54.0
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 1.8e-38 164.1 130 64.6
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 4.8e-36 156.0 127 63.8
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 2.0e-34 150.6 98 76.5
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 7.6e-34 148.7 192 53.6
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 6.7e-30 135.6 105 70.5
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 3.4e-26 123.2 121 57.9
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 2.2e-25 120.6 237 36.3
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.2e-25 120.6 78 79.5
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 1.7e-17 94.4 101 54.5
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 4.2e-16 89.7 69 60.9
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 3.6e-15 86.7 108 51.9
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 7.9e-15 85.5 72 65.3
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 3.4e-10 70.1 65 63.1
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 1.4e-08 64.7 36 72.2
Lj9C654T3 Lonicera japonica HOM05D006016 ORTHO05D007553 3.2e-08 63.5 46 76.1
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 4.7e-07 59.7 46 71.7
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 6.1e-07 59.3 65 53.8


User provided reference genes

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