Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007303g0010 Nicotiana tabacum HOM05D006129 ORTHO05D007446 0.0e+00 1581.2 788 100.0
Nitab4.5_0001453g0090 Nicotiana tabacum HOM05D006129 ORTHO05D007446 0.0e+00 1426.4 814 88.8
Peaxi162Scf00789g00530 Petunia axillaris HOM05D006129 ORTHO05D007446 0.0e+00 1292.3 800 82.4
Solyc11g066850.3 Solanum lycopersicum HOM05D006129 ORTHO05D007446 0.0e+00 1231.9 775 80.9
CAN.G644.34 Capsicum annuum HOM05D006129 ORTHO05D007446 0.0e+00 1199.5 705 85.5
PGSC0003DMG400026525 Solanum tuberosum HOM05D006129 ORTHO05D007446 0.0e+00 1118.6 656 84.9
Sopen11g026560 Solanum pennellii HOM05D006129 ORTHO05D007446 0.0e+00 1100.9 663 83.6
Dinv42121 Davidia involucrata HOM05D006129 ORTHO05D007446 1.0e-300 1036.6 804 65.7
Lj5P206T15 Lonicera japonica HOM05D006129 ORTHO05D007446 5.9e-293 1010.7 806 63.6
CSS0025307 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.7e-287 992.6 803 63.3
CSS0048591 Camellia sinensis var. sinensis HOM05D006129 ORTHO05D007446 1.7e-287 992.6 803 63.3
GSVIVG01031785001 Vitis vinifera HOM05D006129 ORTHO05D007446 3.7e-287 991.5 800 62.4
Duzib248G0151 Durio zibethinus HOM05D006129 ORTHO05D007446 7.0e-286 987.3 769 64.9
QL11p038411 Quercus lobata HOM05D006129 ORTHO05D007446 2.8e-279 965.3 802 61.5
Thecc.02G095400 Theobroma cacao HOM05D006129 ORTHO05D007446 7.0e-278 960.7 775 63.1
CiPaw.05G055300 Carya illinoinensis HOM05D006129 ORTHO05D007446 4.5e-277 958.0 789 62.4
Haze_01881 Corylus avellana HOM05D006129 ORTHO05D007446 5.9e-277 957.6 784 61.4
TWI31G0609 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 3.9e-276 954.9 788 60.8
TWI79G0519 Tripterygium wilfordii HOM05D006129 ORTHO05D007446 6.6e-276 954.1 792 61.0
Dinv23594 Davidia involucrata HOM05D006129 ORTHO05D007446 3.3e-275 951.8 769 62.2
Nn4g23272 Nelumbo nucifera HOM05D006129 ORTHO05D007446 5.6e-275 951.0 809 60.3
Cfa005424 Carpinus fangiana HOM05D006129 ORTHO05D007446 7.3e-275 950.7 784 61.0
vmacro02172 Vaccinium macrocarpon HOM05D006129 ORTHO05D007446 6.1e-274 947.6 791 61.8
COL.COLO4_11724 Corchorus olitorius HOM05D006129 ORTHO05D007446 2.0e-272 942.6 740 63.6
CANSAT25G2181 Cannabis sativa HOM05D006129 ORTHO05D007446 1.0e-268 930.2 798 58.5
DCAR_003623 Daucus carota HOM05D006129 ORTHO05D007446 1.0e-268 930.2 786 60.3
Oeu057674.1 Olea europaea HOM05D006129 ORTHO05D007446 1.0e-268 930.2 783 60.7
Rhsim11G0169300 Rhododendron simsii HOM05D006129 ORTHO05D007446 1.7e-268 929.5 786 61.1
RcHm_v2.0_Chr6g0259211 Rosa chinensis HOM05D006129 ORTHO05D007446 8.6e-268 927.2 785 58.9
Gohir.D01G006000 Gossypium hirsutum HOM05D006129 ORTHO05D007446 2.1e-266 922.5 778 60.8
Cpa.g.sc62.53 Carica papaya HOM05D006129 ORTHO05D007446 4.7e-266 921.4 817 59.4
Gorai.002G007000 Gossypium raimondii HOM05D006129 ORTHO05D007446 2.6e-264 915.6 796 59.9
MD10G1089000 Malus domestica HOM05D006129 ORTHO05D007446 3.4e-264 915.2 796 57.3
Atru.BG.82.p Acer truncatum HOM05D006129 ORTHO05D007446 8.3e-263 910.6 662 65.0
Potri.009G106800 Populus trichocarpa HOM05D006129 ORTHO05D007446 1.1e-262 910.2 797 59.2
Manes.17G094600 Manihot esculenta HOM05D006129 ORTHO05D007446 2.4e-262 909.1 808 58.3
MSTRG.20134 Avicennia marina HOM05D006129 ORTHO05D007446 7.1e-262 907.5 767 60.2
Migut.B00306 Erythranthe guttata HOM05D006129 ORTHO05D007446 7.1e-262 907.5 758 58.8
Gohir.A01G005900 Gossypium hirsutum HOM05D006129 ORTHO05D007446 9.2e-262 907.1 803 59.3
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 1.0e-260 903.7 774 58.9
Sc08g0000140 Simmondsia chinensis HOM05D006129 ORTHO05D007446 1.3e-260 903.3 795 58.1
Aqoxy3G03484 Aquilegia oxysepala HOM05D006129 ORTHO05D007446 5.1e-260 901.4 786 58.9
Ciclev10027854m.g Citrus clementina HOM05D006129 ORTHO05D007446 1.9e-259 899.4 713 60.7
MELO3C026699.2 Cucumis melo HOM05D006129 ORTHO05D007446 2.5e-259 899.0 789 58.2
TAR371G0476 Trochodendron aralioides HOM05D006129 ORTHO05D007446 4.3e-259 898.3 722 62.9
FAN27G0179 Fragaria x ananassa HOM05D006129 ORTHO05D007446 7.3e-259 897.5 779 57.4
Lj2g0010354 Lotus japonicus HOM05D006129 ORTHO05D007446 2.1e-258 896.0 762 59.6
FvH4_2g06900 Fragaria vesca HOM05D006129 ORTHO05D007446 2.3e-257 892.5 749 57.9
FAN24G2628 Fragaria x ananassa HOM05D006129 ORTHO05D007446 9.9e-256 887.1 752 57.8
Prupe.8G116000 Prunus persica HOM05D006129 ORTHO05D007446 1.3e-255 886.7 777 57.4
FAN15G2181 Fragaria x ananassa HOM05D006129 ORTHO05D007446 2.2e-255 885.9 765 57.4
CsaV3_3G028800 Cucumis sativus L. HOM05D006129 ORTHO05D007446 1.9e-254 882.9 786 57.5
Actinidia12976 Actinidia chinensis HOM05D006129 ORTHO05D007446 2.4e-254 882.5 785 58.5
Lalb_Chr10g0095451 Lupinus albus HOM05D006129 ORTHO05D007446 7.1e-254 880.9 774 57.4
Medtr1g026035 Medicago truncatula HOM05D006129 ORTHO05D007446 1.6e-253 879.8 770 57.5
Sed0004701 Sechium edule HOM05D006129 ORTHO05D007446 7.8e-253 877.5 778 57.7
Lsat_1_v5_gn_5_113460 Lactuca sativa HOM05D006129 ORTHO05D007446 5.1e-252 874.8 794 57.2
ECA234G4125 Erigeron canadensis HOM05D006129 ORTHO05D007446 6.6e-252 874.4 788 56.1
Ca_13480_v3 Cicer arietinum L. HOM05D006129 ORTHO05D007446 3.3e-251 872.1 779 57.3
HanXRQChr10g0303221 Helianthus annuus HOM05D006129 ORTHO05D007446 2.1e-250 869.4 797 57.1
THA.LOC104807348 Tarenaya hassleriana HOM05D006129 ORTHO05D007446 2.1e-250 869.4 689 61.2
Glyma.07G178800 Glycine max HOM05D006129 ORTHO05D007446 1.8e-249 866.3 691 60.1
Eucgr.L01320 Eucalyptus grandis HOM05D006129 ORTHO05D007446 6.8e-249 864.4 809 56.9
PGR042G1055 Punica granatum HOM05D006129 ORTHO05D007446 6.8e-249 864.4 778 57.6
TPR.G26422 Trifolium pratense HOM05D006129 ORTHO05D007446 8.9e-249 864.0 746 57.8
Glyma.20G009700 Glycine max HOM05D006129 ORTHO05D007446 4.4e-248 861.7 682 60.6
EL10Ac9g21818 Beta vulgaris HOM05D006129 ORTHO05D007446 1.4e-246 856.7 791 53.4
unitig_744.g24241 Utricularia gibba HOM05D006129 ORTHO05D007446 4.2e-246 855.1 716 57.7
VMungo0464G0688 Vigna mungo HOM05D006129 ORTHO05D007446 8.7e-244 847.4 679 59.6
Phvul.002G308800 Phaseolus vulgaris HOM05D006129 ORTHO05D007446 1.5e-243 846.7 761 56.1
AUR62011424 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.3e-242 843.6 757 55.1
SGA_v2.0_scaffold58G20604 Striga asiatica HOM05D006129 ORTHO05D007446 1.4e-241 840.1 788 54.2
A07p04960 Brassica napus HOM05D006129 ORTHO05D007446 1.5e-240 836.6 716 56.3
BraA07t28289Z Brassica rapa HOM05D006129 ORTHO05D007446 2.9e-239 832.4 716 56.1
arahy.Tifrunner.gnm1.ann1.769PPM Arachis hypogaea HOM05D006129 ORTHO05D007446 8.4e-239 830.9 762 56.4
Thhalv10022548m.g Eutrema salsugineum HOM05D006129 ORTHO05D007446 1.4e-238 830.1 788 54.3
Sp3g29130 Schrenkiella parvula HOM05D006129 ORTHO05D007446 1.9e-238 829.7 742 56.2
AL3G47590 Arabidopsis lyrata HOM05D006129 ORTHO05D007446 2.4e-238 829.3 786 53.8
CARHR106180 Cardamine hirsuta HOM05D006129 ORTHO05D007446 2.4e-238 829.3 723 56.4
Carub.0003s2972 Capsella rubella HOM05D006129 ORTHO05D007446 3.2e-238 828.9 787 53.6
BcaB03g16332 Brassica carinata HOM05D006129 ORTHO05D007446 1.7e-236 823.2 660 58.9
BcaC06g36090 Brassica carinata HOM05D006129 ORTHO05D007446 5.1e-236 821.6 762 54.1
C07p07940 Brassica napus HOM05D006129 ORTHO05D007446 5.1e-236 821.6 762 54.1
BolC7t41212H Brassica oleracea HOM05D006129 ORTHO05D007446 5.1e-236 821.6 762 54.1
AT2G15820 Arabidopsis thaliana HOM05D006129 ORTHO05D007446 3.4e-232 808.9 773 53.6
Ah.01g006750 Amaranthus hybridus HOM05D006129 ORTHO05D007446 4.2e-230 802.0 771 52.1
Aa31LG8G13380 Aethionema arabicum HOM05D006129 ORTHO05D007446 3.0e-228 795.8 755 54.4
AUR62016636 Chenopodium quinoa HOM05D006129 ORTHO05D007446 1.3e-223 780.4 673 56.8
ATR0665G475 Amborella trichopoda HOM05D006129 ORTHO05D007446 8.2e-218 761.1 753 51.3
Os02g0702000 Oryza sativa ssp. japonica HOM05D006129 ORTHO05D007446 1.3e-215 753.8 679 52.3
HPP92_022045 Vanilla planifolia HOM05D006129 ORTHO05D007446 1.1e-214 750.7 775 49.8
FAN20G2787 Fragaria x ananassa HOM05D006129 ORTHO05D007446 1.2e-213 747.3 623 59.6
Zm00001eb251880 Zea mays HOM05D006129 ORTHO05D007446 7.7e-208 728.0 728 50.1
Sabra09G0081600 Salix brachista HOM05D006129 ORTHO05D007446 4.2e-206 722.2 638 59.1
TAR629G1168 Trochodendron aralioides HOM05D006129 ORTHO05D007446 2.0e-203 713.4 551 62.6
Medtr0381s0010 Medicago truncatula HOM05D006129 ORTHO05D007446 7.9e-197 691.4 611 56.6
Eucgr.G01504 Eucalyptus grandis HOM05D006129 ORTHO05D007446 9.7e-187 657.9 765 48.2
SEGI_31419 Sequoiadendron giganteum HOM05D006129 ORTHO05D007446 4.4e-171 605.9 660 45.8
Eucgr.L00820 Eucalyptus grandis HOM05D006129 ORTHO05D007446 6.1e-165 585.5 558 56.3
CDE04G1903 Ceratophyllum demersum HOM05D006129 ORTHO05D007446 1.2e-163 581.3 678 44.5
Psat6g001360 Pisum sativum HOM05D006129 ORTHO05D007446 1.9e-158 563.9 685 44.5
Cc02_g18440 Coffea canephora HOM05D006129 ORTHO05D007446 2.1e-157 560.5 470 59.8
Hund00318 Selenicereus undatus HOM05D006129 ORTHO05D007446 4.3e-142 509.6 375 62.9
Atru.chr5.2887 Acer truncatum HOM05D006129 ORTHO05D007446 1.6e-120 438.0 491 48.1
TAR371G0992 Trochodendron aralioides HOM05D006129 ORTHO05D007446 6.7e-111 406.0 474 48.1
Atru.chr5.2823 Acer truncatum HOM05D006129 ORTHO05D007446 1.6e-101 374.8 492 45.1
QL11p038542 Quercus lobata HOM05D006129 ORTHO05D007446 7.9e-96 355.9 304 58.9
Pp3c25_10050 Physcomitrium patens HOM05D006129 ORTHO05D007446 3.2e-89 334.0 670 31.6
TAR371G0058 Trochodendron aralioides HOM05D006129 ORTHO05D007446 3.6e-88 330.5 360 50.3
Atru.chr5.2881 Acer truncatum HOM05D006129 ORTHO05D007446 1.1e-81 308.9 275 55.3
Atru.chr5.2826 Acer truncatum HOM05D006129 ORTHO05D007446 4.7e-80 303.5 379 49.1
SMO356G0628 Selaginella moellendorffii HOM05D006129 ORTHO05D007446 1.4e-71 275.4 718 27.0
Mapoly0036s0055 Marchantia polymorpha HOM05D006129 ORTHO05D007446 1.5e-70 271.9 661 28.3
AagrBONN_evm.TU.Sc2ySwM_344.1734 Anthoceros agrestis HOM05D006129 ORTHO05D007446 4.8e-69 266.9 647 27.7
AagrBONN_evm.TU.Sc2ySwM_344.5085 Anthoceros agrestis HOM05D006129 ORTHO05D007446 1.7e-58 231.9 702 25.8
TAR629G1760 Trochodendron aralioides HOM05D006129 ORTHO05D007446 5.2e-55 220.3 197 56.3
Cc02_g18430 Coffea canephora HOM05D006129 ORTHO05D007446 4.7e-48 197.2 159 59.1
arahy.Tifrunner.gnm1.ann1.SUMB0F Arachis hypogaea HOM05D006129 ORTHO05D007446 1.6e-43 182.2 182 54.9
Pp3c16_23700 Physcomitrium patens HOM05D006129 ORTHO05D007446 1.7e-42 178.7 658 24.0
Atru.chr5.2882 Acer truncatum HOM05D006129 ORTHO05D007446 1.4e-28 132.5 200 39.5
QL11p038477 Quercus lobata HOM05D006129 ORTHO05D007446 1.5e-22 112.5 162 40.7
CBR_g19584 Chara braunii HOM05D006129 ORTHO05D007446 8.1e-16 90.1 685 18.7
Atru.chr5.2820 Acer truncatum HOM05D006129 ORTHO05D007446 4.0e-15 87.8 169 37.9
CBR_g8924 Chara braunii HOM05D006129 ORTHO05D007446 6.9e-15 87.0 690 19.3
RcHm_v2.0_Chr6g0302241 Rosa chinensis HOM05D006129 ORTHO05D007446 2.9e-13 81.6 61 52.5
RcHm_v2.0_Chr1g0376021 Rosa chinensis HOM05D006129 ORTHO05D007446 7.8e-11 73.6 51 56.9
RcHm_v2.0_Chr2g0152801 Rosa chinensis HOM05D006129 ORTHO05D007446 5.1e-10 70.9 53 56.6
Sopen01g021730 Solanum pennellii HOM05D001779 ORTHO05D001753 3.6e-08 64.7 397 21.4
TAR371G0388 Trochodendron aralioides HOM05D001464 ORTHO05D002836 3.1e-07 61.6 54 59.3
AagrBONN_evm.TU.Sc2ySwM_228.1156 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.0e-07 61.2 368 21.7
Lalb_Chr12g0200631 Lupinus albus HOM05D001779 ORTHO05D001753 2.0e-06 58.9 394 20.1
AagrBONN_evm.TU.Sc2ySwM_368.592 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.6e-06 58.5 235 25.1
CANSAT01G2728 Cannabis sativa HOM05D000001 ORTHO05D000003 4.5e-06 57.8 203 27.1
HanXRQChr04g0108171 Helianthus annuus HOM05D001779 ORTHO05D001753 5.8e-06 57.4 201 24.9
CsaV3_7G026080 Cucumis sativus L. HOM05D001779 ORTHO05D001753 7.6e-06 57.0 198 24.7


User provided reference genes

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