Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 0.0e+00 1402.1 766 100.0
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 0.0e+00 1220.3 772 86.8
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 8.0e-295 1016.9 798 74.8
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 1.3e-289 999.6 806 71.2
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 9.9e-277 956.8 797 70.5
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 2.9e-268 928.7 894 63.2
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 1.1e-262 910.2 798 67.4
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 7.5e-176 621.7 783 52.2
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 1.7e-175 620.5 689 51.8
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 2.3e-172 610.1 653 55.9
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 4.7e-170 602.4 757 53.2
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 6.4e-167 592.0 716 48.6
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 9.2e-166 588.2 599 59.1
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 3.4e-152 543.1 739 45.3
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 6.4e-151 538.9 698 48.4
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 8.4e-151 538.5 641 48.8
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 6.6e-148 528.9 810 43.2
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 4.4e-144 516.2 867 42.1
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.4e-136 490.0 741 44.0
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 3.4e-136 490.0 721 45.5
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.9e-131 474.2 783 45.2
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.6e-130 471.1 947 39.1
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.1e-129 468.4 669 43.0
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 2.2e-127 460.7 735 43.9
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 6.4e-127 459.1 654 43.7
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 2.1e-125 454.1 753 44.2
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.6e-122 444.5 761 43.2
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 1.6e-122 444.5 637 44.4
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 4.8e-122 443.0 761 43.2
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 8.2e-122 442.2 761 43.1
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 8.2e-122 442.2 674 45.3
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 4.9e-119 433.0 676 40.2
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 6.5e-119 432.6 781 42.3
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 2.5e-118 430.6 796 43.0
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 5.5e-118 429.5 788 41.5
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 2.7e-117 427.2 778 37.7
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 1.5e-115 421.4 843 38.6
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 1.3e-114 418.3 833 37.0
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 1.6e-114 417.9 894 38.4
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 2.2e-114 417.5 770 40.5
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 8.2e-114 415.6 835 38.0
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.4e-113 414.8 819 40.4
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.8e-113 414.5 650 43.1
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 6.9e-113 412.5 906 36.6
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 2.6e-112 410.6 731 41.7
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 2.6e-112 410.6 811 40.4
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 1.3e-111 408.3 787 37.5
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 1.9e-110 404.4 815 38.7
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 9.4e-110 402.1 823 38.4
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.0e-108 398.7 747 38.0
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 4.3e-107 393.3 803 38.4
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 4.3e-107 393.3 756 38.6
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 2.4e-105 387.5 846 36.2
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 9.1e-105 385.6 834 36.7
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.6e-104 384.0 709 39.8
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 3.4e-104 383.6 754 38.6
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 1.0e-103 382.1 808 37.6
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 1.0e-103 382.1 795 37.2
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.0e-103 382.1 649 39.9
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 1.3e-103 381.7 693 40.1
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 6.5e-103 379.4 696 40.8
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 8.5e-103 379.0 645 39.2
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 1.1e-102 378.6 804 36.7
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 2.7e-101 374.0 874 34.8
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 4.4e-99 366.7 760 35.5
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 7.4e-99 365.9 812 37.9
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.3e-98 365.2 656 38.7
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.3e-98 365.2 644 39.1
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.3e-98 365.2 555 40.5
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 2.8e-98 364.0 773 37.8
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 1.1e-97 362.1 665 38.5
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 1.1e-97 362.1 716 40.2
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 1.8e-97 361.3 645 37.7
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 3.1e-97 360.5 813 37.0
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 4.5e-96 356.7 697 38.3
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.0e-95 355.5 953 32.1
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 2.2e-95 354.4 775 37.2
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 8.5e-95 352.4 777 36.6
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.1e-94 352.1 663 38.2
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 5.5e-94 349.7 873 35.1
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 9.4e-94 349.0 775 35.0
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 8.0e-93 345.9 662 37.6
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 3.9e-92 343.6 877 34.3
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 8.8e-92 342.4 899 31.8
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.5e-91 341.7 762 34.1
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 2.0e-91 341.3 663 38.5
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 3.3e-91 340.5 769 34.6
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 5.7e-91 339.7 739 33.4
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 1.3e-90 338.6 641 37.6
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 2.2e-90 337.8 772 36.3
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.2e-88 332.0 624 38.0
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 1.2e-88 332.0 671 35.9
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 2.0e-88 331.3 855 34.7
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 4.5e-88 330.1 682 36.1
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 5.9e-88 329.7 659 37.0
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 7.7e-88 329.3 682 36.1
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 3.8e-87 327.0 682 35.9
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 8.5e-87 325.9 671 36.4
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 7.2e-86 322.8 861 31.1
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 1.0e-84 318.9 760 36.1
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 1.8e-84 318.2 757 36.2
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 2.3e-84 317.8 698 33.5
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 3.0e-84 317.4 688 35.5
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 2.0e-80 304.7 645 38.1
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.3e-79 302.0 581 41.8
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 2.9e-79 300.8 747 34.5
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.1e-78 298.9 924 28.9
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 4.4e-75 287.0 687 33.2
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 7.5e-75 286.2 333 54.7
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 7.5e-75 286.2 955 28.9
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 2.7e-64 251.1 675 30.4
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 8.6e-63 246.1 663 33.2
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.5e-62 244.6 695 29.5
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 1.8e-60 238.4 696 31.5
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 5.4e-57 226.9 191 61.8
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 9.2e-57 226.1 309 46.3
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.0e-55 222.6 556 31.5
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.4e-49 202.2 299 43.1
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.9e-46 191.8 286 42.3
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.1e-45 188.3 672 26.6
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 1.8e-44 185.3 274 43.4
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 2.1e-40 171.8 171 49.7
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 6.0e-40 170.2 460 32.4
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 3.9e-39 167.5 172 54.1
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.2e-37 162.5 204 46.1
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 1.1e-33 149.4 353 33.1
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 1.3e-31 142.5 144 56.9
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 3.3e-30 137.9 293 37.2
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 2.0e-27 128.6 270 31.5
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 2.7e-24 118.2 147 48.3
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 1.0e-23 116.3 161 41.0
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 6.6e-23 113.6 222 34.2
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 6.6e-23 113.6 775 25.0
CAN.G97.26 Capsicum annuum HOM05D000252 ORTHO05D006388 8.4e-18 96.7 62 72.6
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 5.4e-17 94.0 304 26.6
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 3.0e-15 88.2 330 26.7
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 8.7e-15 86.7 210 32.4
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 3.8e-10 71.2 73 53.4
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 3.0e-07 61.6 89 37.1


User provided reference genes

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