Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 7.7e-106 387.1 189 100.0
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 9.4e-96 353.6 189 92.6
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 2.0e-82 309.3 189 87.3
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 3.5e-82 308.5 189 87.3
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 1.0e-81 307.0 189 87.3
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 5.5e-80 301.2 189 84.7
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 2.3e-70 269.2 186 79.0
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 1.5e-64 250.0 189 72.0
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 2.5e-64 249.2 198 67.7
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 5.2e-62 241.5 195 67.2
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 6.4e-60 234.6 190 68.9
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 3.2e-59 232.3 185 67.6
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 3.5e-58 228.8 150 78.7
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 4.6e-58 228.4 198 63.6
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 6.0e-58 228.0 192 67.2
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 3.9e-57 225.3 154 76.0
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 5.1e-57 224.9 187 65.8
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 5.1e-57 224.9 200 64.5
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 5.6e-56 221.5 195 64.1
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 5.6e-56 221.5 179 65.9
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 5.6e-56 221.5 170 71.2
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 7.3e-56 221.1 180 66.7
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 7.3e-56 221.1 202 62.9
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.2e-55 220.3 184 63.0
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.6e-55 219.9 189 63.0
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 1.6e-55 219.9 189 63.5
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 2.8e-55 219.2 167 70.1
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 3.6e-55 218.8 188 65.4
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 8.1e-55 217.6 189 65.6
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.4e-54 216.9 167 70.1
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 1.8e-54 216.5 144 75.7
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 1.8e-54 216.5 196 62.2
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 1.8e-54 216.5 142 78.9
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 4.0e-54 215.3 142 78.2
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 4.0e-54 215.3 134 81.3
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 6.8e-54 214.5 155 74.2
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 8.9e-54 214.2 142 77.5
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 1.2e-53 213.8 186 62.9
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 1.2e-53 213.8 189 61.9
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 1.5e-53 213.4 125 86.4
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 1.5e-53 213.4 193 59.6
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 2.0e-53 213.0 185 63.8
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 2.0e-53 213.0 191 60.2
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 4.4e-53 211.8 141 78.0
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 9.9e-53 210.7 192 58.9
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 1.3e-52 210.3 169 66.3
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 1.7e-52 209.9 134 79.9
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 2.2e-52 209.5 153 72.5
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 2.2e-52 209.5 134 76.9
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 2.2e-52 209.5 155 71.0
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 3.7e-52 208.8 182 66.5
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 3.7e-52 208.8 193 60.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 3.7e-52 208.8 176 64.2
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 8.3e-52 207.6 128 81.2
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 1.1e-51 207.2 171 64.3
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 1.4e-51 206.8 174 64.4
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 1.9e-51 206.5 182 62.1
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 1.9e-51 206.5 168 68.5
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 2.4e-51 206.1 167 66.5
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 5.4e-51 204.9 127 81.1
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 1.2e-50 203.8 184 60.3
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 1.2e-50 203.8 153 70.6
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 1.2e-50 203.8 145 71.7
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 3.5e-50 202.2 174 65.5
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 4.6e-50 201.8 161 67.1
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 7.8e-50 201.1 124 81.5
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 1.0e-49 200.7 127 78.7
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.3e-49 200.3 172 66.3
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 2.3e-49 199.5 122 81.1
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 5.1e-49 198.4 156 66.0
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 5.1e-49 198.4 172 65.7
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 8.6e-49 197.6 143 68.5
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 8.6e-49 197.6 146 74.0
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 1.1e-48 197.2 152 70.4
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 1.5e-48 196.8 162 66.7
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.9e-48 196.4 172 65.1
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 2.5e-48 196.1 128 77.3
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 3.3e-48 195.7 172 65.1
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 4.3e-48 195.3 131 79.4
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 5.6e-48 194.9 131 79.4
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 7.3e-48 194.5 160 67.5
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 7.3e-48 194.5 169 63.9
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.6e-47 193.4 172 64.5
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 3.6e-47 192.2 143 71.3
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 3.6e-47 192.2 143 71.3
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 6.2e-47 191.4 126 77.0
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 4.0e-46 188.7 127 74.8
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 5.2e-46 188.3 123 74.8
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 6.8e-46 188.0 141 69.5
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 6.8e-46 188.0 122 77.9
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 1.2e-45 187.2 148 67.6
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.5e-45 186.8 187 57.2
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 3.4e-45 185.7 164 61.6
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 1.7e-44 183.3 169 59.2
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 8.4e-44 181.0 175 58.9
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 1.1e-43 180.6 120 77.5
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 1.1e-43 180.6 127 73.2
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 1.1e-43 180.6 127 73.2
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 9.2e-43 177.6 122 76.2
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 6.0e-42 174.9 115 78.3
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 7.8e-42 174.5 189 55.6
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 1.0e-41 174.1 102 85.3
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 5.6e-40 168.3 193 54.9
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 1.7e-36 156.8 120 67.5
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 8.4e-36 154.5 202 48.0
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 9.3e-35 151.0 116 71.6
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 8.7e-33 144.4 86 84.9
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 1.7e-28 130.2 78 82.1
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 4.9e-28 128.6 80 80.0
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 6.4e-28 128.3 79 82.3
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 8.4e-28 127.9 83 78.3
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 3.2e-27 125.9 87 75.9
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 4.2e-27 125.6 82 76.8
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.2e-26 124.0 69 84.1
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 2.1e-26 123.2 68 85.3
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 5.1e-25 118.6 88 68.2
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 1.5e-24 117.1 102 66.7
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.3e-23 114.0 62 85.5
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 2.1e-23 113.2 132 51.5
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 1.2e-21 107.5 67 77.6
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 5.8e-21 105.1 76 65.8
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 4.9e-20 102.1 104 54.8
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 3.5e-18 95.9 59 76.3
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.0e-17 94.4 122 46.7
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 3.9e-17 92.4 61 72.1
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.9e-16 90.1 108 45.4
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 9.6e-16 87.8 125 49.6
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 9.0e-14 81.3 89 48.3
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 2.7e-10 69.7 57 63.2
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 2.2e-07 60.1 86 43.0
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 8.2e-07 58.2 85 43.5


User provided reference genes

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