Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 4.0e-150 534.6 256 100.0
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 1.2e-138 496.5 264 91.7
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 2.7e-114 415.6 250 82.8
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 1.4e-113 413.3 250 82.0
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 4.2e-107 391.7 250 77.6
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 1.4e-97 360.1 193 87.0
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 8.9e-89 330.9 218 69.3
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 2.0e-88 329.7 219 70.8
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 1.3e-87 327.0 243 64.6
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 2.8e-87 325.9 233 65.2
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 2.8e-87 325.9 233 65.2
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 3.7e-87 325.5 212 69.3
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.1e-86 323.9 227 67.0
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 3.1e-86 322.4 220 68.2
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 7.0e-86 321.2 244 62.7
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 9.2e-86 320.9 213 68.1
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 2.7e-85 319.3 196 81.1
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 3.5e-85 318.9 205 69.8
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 7.8e-85 317.8 246 62.6
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 1.7e-84 316.6 204 70.1
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 5.0e-84 315.1 208 68.8
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 6.6e-84 314.7 215 66.5
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 8.6e-84 314.3 224 65.2
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 8.6e-84 314.3 213 67.6
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 8.6e-84 314.3 204 70.6
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 1.9e-83 313.2 214 68.2
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 1.9e-83 313.2 213 68.1
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 2.5e-83 312.8 219 67.1
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 3.3e-83 312.4 243 62.1
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 3.3e-83 312.4 224 66.1
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 5.6e-83 311.6 225 64.9
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 2.8e-82 309.3 204 71.6
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 4.7e-82 308.5 230 62.6
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 4.7e-82 308.5 208 68.8
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 6.1e-82 308.1 219 64.8
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 6.1e-82 308.1 214 65.4
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 1.4e-81 307.0 208 69.2
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.8e-81 306.6 208 68.8
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 1.8e-81 306.6 245 61.2
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 4.0e-81 305.4 219 66.7
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 5.2e-81 305.1 221 65.6
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 1.2e-80 303.9 217 66.4
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 2.0e-80 303.1 221 65.6
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 2.0e-80 303.1 212 66.0
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 2.0e-80 303.1 236 61.9
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 3.4e-80 302.4 219 64.4
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 3.4e-80 302.4 231 62.8
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 4.4e-80 302.0 205 69.3
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 5.8e-80 301.6 220 64.5
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 9.8e-80 300.8 220 65.5
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.3e-79 300.4 210 66.2
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 2.9e-79 299.3 192 70.3
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 3.7e-79 298.9 220 65.0
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 1.1e-78 297.4 206 66.0
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 1.1e-78 297.4 212 64.6
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 1.4e-78 297.0 212 65.6
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 4.1e-78 295.4 212 64.2
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 5.4e-78 295.0 220 64.1
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 7.0e-78 294.7 221 64.3
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 2.7e-77 292.7 208 64.9
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 3.5e-77 292.4 242 59.9
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 3.5e-77 292.4 242 59.9
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 3.5e-77 292.4 242 59.9
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 1.7e-76 290.0 218 62.8
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 1.7e-76 290.0 224 62.5
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 2.3e-76 289.7 208 65.9
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 3.0e-76 289.3 209 66.0
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 8.6e-76 287.7 204 64.2
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 8.6e-76 287.7 222 62.6
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 1.1e-75 287.3 215 63.3
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 1.9e-75 286.6 209 65.6
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 2.5e-75 286.2 212 64.6
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 2.5e-75 286.2 204 64.2
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 2.5e-75 286.2 257 56.8
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 5.6e-75 285.0 215 62.8
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 1.2e-74 283.9 213 62.9
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 8.0e-74 281.2 205 63.4
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 1.4e-73 280.4 208 62.0
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 1.2e-72 277.3 214 61.7
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 1.2e-72 277.3 244 57.0
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.2e-72 277.3 213 62.4
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 2.6e-72 276.2 210 61.4
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 5.8e-72 275.0 208 60.6
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 1.7e-71 273.5 205 62.9
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 3.5e-69 265.8 224 56.7
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 1.3e-68 263.8 199 64.8
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 3.9e-68 262.3 159 77.4
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 8.6e-68 261.2 158 75.9
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 4.0e-65 252.3 159 67.9
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 1.5e-64 250.4 156 73.7
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 3.4e-64 249.2 186 64.0
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 1.0e-60 237.7 158 67.1
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 6.6e-60 235.0 153 68.6
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 7.3e-59 231.5 164 62.8
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 3.6e-58 229.2 163 70.6
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 6.2e-58 228.4 158 67.1
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 6.2e-58 228.4 243 50.2
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 1.2e-56 224.2 155 67.1
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 9.3e-46 188.0 242 40.1
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 2.1e-45 186.8 280 37.5
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 6.6e-44 181.8 221 43.9
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 1.6e-42 177.2 114 74.6
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 1.9e-30 137.1 158 41.1
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 1.3e-26 124.4 101 63.4
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 2.1e-26 123.6 104 52.9
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 1.1e-25 121.3 112 49.1
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 2.4e-25 120.2 188 36.2
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 6.3e-18 95.5 112 51.8
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 1.0e-12 78.2 103 41.7
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 3.0e-12 76.6 56 66.1
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 7.4e-11 72.0 51 74.5
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 2.8e-10 70.1 110 33.6
PRCOL_00003886 Prasinoderma coloniale HOM05D006551 ORTHO05D044110 1.1e-09 68.2 169 30.2
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 1.5e-08 64.3 55 45.5
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 3.4e-08 63.2 44 56.8
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 2.2e-07 60.5 40 57.5
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 2.2e-07 60.5 109 33.0
PRCOL_00002998 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 6.5e-07 58.9 135 28.9
Cfa024972 Carpinus fangiana HOM05D006551 ORTHO05D043702 8.5e-07 58.5 113 36.3
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 1.1e-06 58.2 44 47.7


User provided reference genes

Program Settings