Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.3e-38 162.9 102 100.0
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 1.5e-23 112.8 89 87.6
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 2.8e-22 108.6 89 85.4
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 6.3e-22 107.5 75 97.3
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.1e-21 104.8 58 87.9
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 5.6e-18 94.4 89 78.7
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 3.6e-17 91.7 79 81.0
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.4e-16 89.7 78 80.8
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.8e-16 89.4 78 80.8
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 2.3e-16 89.0 88 72.7
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.3e-16 89.0 88 75.0
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 5.2e-16 87.8 87 73.6
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 5.2e-16 87.8 89 69.7
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 8.9e-16 87.0 88 70.5
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 2.0e-15 85.9 81 74.1
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.0e-15 85.9 76 85.5
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 3.4e-15 85.1 77 72.7
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 3.4e-15 85.1 88 69.3
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 7.5e-15 84.0 72 84.7
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 7.5e-15 84.0 72 80.6
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 7.5e-15 84.0 84 71.4
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 9.8e-15 83.6 72 80.6
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 9.8e-15 83.6 88 70.5
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.3e-14 83.2 89 73.0
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 1.7e-14 82.8 88 70.5
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 1.7e-14 82.8 72 84.7
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.2e-14 82.4 88 71.6
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.2e-14 82.4 88 70.5
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.2e-14 82.4 88 70.5
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.2e-14 82.4 88 69.3
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.9e-14 82.0 90 72.2
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.9e-14 82.0 81 75.3
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 3.7e-14 81.6 72 77.8
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 4.9e-14 81.3 89 66.3
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 4.9e-14 81.3 80 68.8
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.1e-13 80.1 88 67.0
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 1.4e-13 79.7 71 78.9
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.4e-13 79.7 73 76.7
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 2.4e-13 79.0 85 69.4
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 3.2e-13 78.6 72 77.8
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 4.1e-13 78.2 88 65.9
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 4.1e-13 78.2 72 77.8
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 5.4e-13 77.8 88 68.2
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.4e-13 77.8 97 63.9
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.4e-13 77.8 97 60.8
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 5.4e-13 77.8 72 76.4
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 7.0e-13 77.4 81 69.1
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 9.2e-13 77.0 46 78.3
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 9.2e-13 77.0 88 65.9
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 1.2e-12 76.6 82 68.3
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.2e-12 76.6 89 68.5
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 2.0e-12 75.9 70 78.6
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 2.7e-12 75.5 88 68.2
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 3.5e-12 75.1 88 65.9
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 3.5e-12 75.1 73 76.7
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 6.0e-12 74.3 71 76.1
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 6.0e-12 74.3 88 64.8
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 6.0e-12 74.3 76 76.3
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 7.8e-12 73.9 52 69.2
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 7.8e-12 73.9 74 73.0
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.0e-11 73.6 55 69.1
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 1.0e-11 73.6 55 69.1
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.0e-11 73.6 39 89.7
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 1.3e-11 73.2 74 70.3
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 1.7e-11 72.8 89 64.0
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 2.3e-11 72.4 72 70.8
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 3.0e-11 72.0 88 64.8
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 3.0e-11 72.0 73 74.0
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 3.0e-11 72.0 87 67.8
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.0e-11 72.0 72 76.4
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 5.0e-11 71.2 88 65.9
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 6.6e-11 70.9 71 71.8
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 6.6e-11 70.9 88 63.6
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 6.6e-11 70.9 89 46.1
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 8.6e-11 70.5 75 69.3
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 8.6e-11 70.5 89 65.2
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 8.6e-11 70.5 72 73.6
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 1.1e-10 70.1 61 59.0
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 1.1e-10 70.1 78 62.8
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 1.5e-10 69.7 56 67.9
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.5e-10 69.7 83 60.2
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.5e-10 69.7 89 65.2
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 1.9e-10 69.3 53 66.0
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 1.9e-10 69.3 53 66.0
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.9e-10 69.3 86 60.5
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.9e-10 69.3 63 60.3
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 2.5e-10 68.9 79 65.8
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 2.5e-10 68.9 73 72.6
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 2.5e-10 68.9 69 71.0
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 2.5e-10 68.9 72 68.1
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 2.5e-10 68.9 88 65.9
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 3.3e-10 68.6 63 57.1
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 3.3e-10 68.6 86 62.8
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.3e-10 68.6 86 62.8
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 3.3e-10 68.6 72 75.0
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 4.3e-10 68.2 88 67.0
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 4.3e-10 68.2 46 71.7
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.3e-10 68.2 86 62.8
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 4.3e-10 68.2 88 64.8
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 4.3e-10 68.2 46 65.2
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 5.6e-10 67.8 87 64.4
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 5.6e-10 67.8 92 42.4
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 9.5e-10 67.0 74 51.4
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 9.5e-10 67.0 89 43.8
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 9.5e-10 67.0 90 41.1
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 9.5e-10 67.0 73 74.0
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 1.6e-09 66.2 86 66.3
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.6e-09 66.2 62 56.5
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.1e-09 65.9 46 69.6
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 2.8e-09 65.5 63 54.0
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 2.8e-09 65.5 59 55.9
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 3.6e-09 65.1 56 58.9
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 3.6e-09 65.1 53 62.3
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 4.7e-09 64.7 89 42.7
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 6.2e-09 64.3 77 41.6
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 6.2e-09 64.3 72 70.8
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 8.0e-09 63.9 73 49.3
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 1.1e-08 63.5 77 44.2
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 1.8e-08 62.8 89 58.4
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 2.3e-08 62.4 84 64.3
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.3e-08 62.4 72 69.4
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 3.1e-08 62.0 72 72.2
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 4.0e-08 61.6 71 64.8
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 5.2e-08 61.2 89 40.4
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 8.9e-08 60.5 60 58.3
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 8.9e-08 60.5 88 62.5
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.2e-07 60.1 45 60.0
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 1.5e-07 59.7 47 66.0
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 2.0e-07 59.3 61 49.2
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 2.0e-07 59.3 89 38.2
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 3.4e-07 58.5 48 62.5
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 3.4e-07 58.5 90 43.3
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 4.4e-07 58.2 52 53.8
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 1.3e-06 56.6 73 64.4
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.3e-06 56.6 81 40.7
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 2.2e-06 55.8 123 33.3
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.9e-06 55.5 131 32.1
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 2.9e-06 55.5 86 37.2
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 3.7e-06 55.1 86 40.7
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 4.9e-06 54.7 112 34.8
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 4.9e-06 54.7 104 37.5
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 6.4e-06 54.3 50 56.0
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 6.4e-06 54.3 118 43.2
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 6.4e-06 54.3 121 32.2


User provided reference genes

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