Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 0.0e+00 1325.1 681 100.0
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 0.0e+00 1173.7 715 87.0
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 0.0e+00 1113.2 721 79.9
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 1.1e-308 1062.8 729 76.5
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 3.4e-305 1051.2 715 77.6
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 7.3e-231 804.3 715 57.9
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 8.3e-227 790.8 702 57.5
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 8.6e-224 780.8 471 84.5
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 7.3e-223 777.7 682 58.4
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.8e-221 773.1 724 54.7
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 8.9e-221 770.8 718 56.0
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 5.4e-218 761.5 720 54.6
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 7.3e-215 751.1 709 54.3
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 5.2e-213 745.0 705 53.5
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 7.6e-212 741.1 637 58.6
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 5.4e-210 734.9 695 53.2
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 1.6e-209 733.4 713 53.4
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 2.3e-208 729.6 703 54.8
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 3.0e-208 729.2 713 52.5
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 1.1e-207 727.2 696 53.3
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 1.9e-207 726.5 688 54.1
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 4.3e-207 725.3 720 54.9
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 5.6e-207 724.9 705 52.8
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 7.3e-207 724.5 710 54.4
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 1.2e-206 723.8 688 54.8
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 2.8e-206 722.6 719 51.9
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 8.1e-206 721.1 720 51.7
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 1.4e-205 720.3 715 53.7
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 6.8e-205 718.0 706 54.7
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 2.0e-204 716.5 719 54.7
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 3.8e-203 712.2 702 52.4
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 4.9e-203 711.8 721 53.1
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.4e-202 709.5 645 55.0
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 6.0e-201 704.9 705 52.2
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 7.8e-201 704.5 706 51.6
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 1.0e-200 704.1 706 52.4
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 1.3e-200 703.7 699 52.5
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 3.0e-200 702.6 589 59.4
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 8.7e-200 701.0 723 49.9
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 8.7e-200 701.0 703 53.2
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.1e-199 700.7 677 55.2
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 6.2e-198 694.9 701 51.4
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.5e-196 690.3 737 51.2
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 2.0e-196 689.9 703 53.3
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 4.2e-194 682.2 717 51.5
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 7.1e-194 681.4 705 50.8
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 9.3e-194 681.0 709 52.0
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 9.3e-194 681.0 715 52.2
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 4.3e-191 672.2 753 48.5
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.4e-191 671.4 709 52.3
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 6.9e-189 664.8 867 45.3
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 8.4e-187 657.9 705 49.4
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 1.1e-186 657.5 719 48.5
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 4.6e-185 652.1 720 48.8
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 4.6e-185 652.1 701 49.6
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 6.7e-184 648.3 716 48.7
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 6.9e-181 638.3 711 49.1
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 3.4e-180 636.0 713 48.0
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 7.6e-180 634.8 697 50.2
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 4.9e-179 632.1 719 48.0
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.9e-178 630.2 710 49.0
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 3.2e-178 629.4 722 47.2
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 7.1e-178 628.2 714 48.2
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 2.7e-177 626.3 719 49.0
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 4.6e-177 625.5 635 49.4
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 3.3e-175 619.4 718 46.8
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 7.4e-175 618.2 713 48.2
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 7.4e-175 618.2 709 48.7
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 6.3e-174 615.1 710 48.7
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 1.1e-173 614.4 698 46.6
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 5.3e-173 612.1 697 48.8
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 5.9e-172 608.6 707 48.4
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 1.3e-171 607.4 694 49.1
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 1.4e-170 604.0 704 46.7
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 3.3e-167 592.8 766 44.1
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 3.3e-167 592.8 735 46.4
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 3.1e-165 586.3 564 56.6
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 1.6e-161 573.9 657 47.8
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 1.4e-160 570.9 660 48.6
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 3.7e-158 562.8 712 43.7
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 2.7e-153 546.6 654 46.5
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 3.9e-152 542.7 703 42.0
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 8.8e-152 541.6 714 44.4
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.6e-151 540.0 748 42.1
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 2.8e-150 536.6 714 44.8
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 2.1e-145 520.4 750 42.8
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.1e-141 508.1 444 59.0
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 3.6e-137 493.0 452 55.5
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 3.5e-132 476.5 703 41.7
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 3.6e-129 466.5 540 46.5
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 4.0e-128 463.0 288 85.8
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 4.1e-125 453.0 376 60.9
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 5.9e-124 449.1 614 41.2
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.3e-123 447.2 701 36.9
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 8.6e-115 418.7 462 48.3
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 6.2e-113 412.5 325 64.0
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 6.2e-113 412.5 618 37.1
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 8.6e-91 339.0 469 39.0
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.5e-90 338.2 533 36.0
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.5e-84 317.0 340 45.9
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 6.0e-84 316.2 228 73.7
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 7.3e-82 309.3 261 56.3
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 1.5e-79 301.6 330 48.8
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.9e-77 294.7 287 52.3
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.2e-68 265.4 285 51.2
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.3e-53 212.6 341 37.0
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 8.7e-51 206.1 259 44.8
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.5e-46 189.5 221 47.1
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.9e-45 188.3 533 30.4
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 1.2e-44 185.7 183 52.5
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-38 165.6 339 32.4
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-37 162.5 320 31.2
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 2.5e-37 161.4 251 38.2
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 9.4e-37 159.5 254 36.6
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.0e-35 156.0 280 35.0
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 1.3e-33 149.1 174 46.6
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 1.4e-32 145.6 159 49.7
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 2.4e-32 144.8 168 46.4
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.9e-30 137.9 224 34.4
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-29 136.0 195 37.9
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.9e-29 135.2 181 39.8
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 1.8e-27 128.6 147 47.6
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.6e-26 124.8 267 32.6
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 7.5e-26 123.2 313 29.4
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.7e-26 122.9 223 35.0
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.8e-25 120.6 227 31.3
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 1.1e-24 119.4 165 41.8
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.0e-24 116.7 155 41.3
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 5.0e-22 110.5 88 56.8
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.2e-21 107.8 133 41.4
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 5.5e-21 107.1 376 27.9
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.0e-20 103.2 217 31.8
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 1.7e-17 95.5 143 42.0
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 8.3e-17 93.2 78 57.7
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.4e-16 92.4 85 50.6
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 1.8e-16 92.0 104 49.0
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.8e-16 92.0 151 37.1
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 4.1e-16 90.9 109 45.9
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.4e-16 90.5 85 49.4
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.5e-15 87.4 85 48.2
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 7.7e-15 86.7 117 38.5
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 7.7e-15 86.7 76 55.3
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.8e-14 84.3 85 47.1
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 5.0e-14 84.0 99 43.4
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.5e-13 82.4 142 48.6
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 4.7e-12 77.4 62 56.5
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 6.1e-12 77.0 85 44.7
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.0e-11 74.3 94 41.5
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.2e-11 73.9 85 48.2
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 1.5e-10 72.4 61 57.4
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-10 72.4 170 31.2
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 4.1e-08 64.3 61 54.1
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 7.0e-08 63.5 55 45.5
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.7e-07 61.6 35 71.4
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 3.5e-07 61.2 47 59.6
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.3e-06 58.5 167 29.9
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.9e-06 58.2 42 61.9
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.0e-06 57.4 42 59.5


User provided reference genes

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