Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 7.2e-56 220.3 109 100.0
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.5e-53 212.6 109 97.2
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.5e-50 202.6 109 89.9
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.4e-50 201.4 109 89.0
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 4.5e-50 201.1 109 89.0
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.2e-49 198.7 109 88.1
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 6.5e-49 197.2 109 87.2
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 6.5e-49 197.2 109 88.1
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 8.5e-49 196.8 109 86.2
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.4e-48 196.1 109 87.2
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 7.2e-48 193.7 109 86.2
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.6e-47 192.6 109 85.3
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.7e-47 191.8 109 84.4
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 8.0e-47 190.3 106 84.9
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.8e-46 189.1 109 85.3
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.8e-46 189.1 109 85.3
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.3e-46 188.7 106 84.9
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 3.9e-46 188.0 108 82.4
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 3.9e-46 188.0 106 84.0
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 5.2e-46 187.6 108 82.4
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 5.2e-46 187.6 106 84.9
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 8.8e-46 186.8 106 82.1
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 8.8e-46 186.8 106 84.0
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 1.5e-45 186.0 106 84.0
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.5e-45 186.0 106 84.9
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 1.5e-45 186.0 106 83.0
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 2.0e-45 185.7 109 84.4
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.3e-45 184.9 103 86.4
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 4.4e-45 184.5 105 82.9
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 4.4e-45 184.5 103 87.4
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 4.4e-45 184.5 107 86.9
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 5.7e-45 184.1 102 84.3
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 5.7e-45 184.1 106 84.0
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 7.4e-45 183.7 108 82.4
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 9.7e-45 183.3 98 88.8
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 9.7e-45 183.3 108 81.5
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.3e-44 183.0 109 83.5
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 1.3e-44 183.0 104 84.6
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 2.2e-44 182.2 106 85.8
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 2.2e-44 182.2 103 84.5
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 2.2e-44 182.2 106 82.1
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 2.2e-44 182.2 106 84.9
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 3.7e-44 181.4 108 83.3
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.7e-44 181.4 106 81.1
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.7e-44 181.4 106 81.1
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 3.7e-44 181.4 106 83.0
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 4.8e-44 181.0 110 81.8
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 4.8e-44 181.0 107 80.4
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 4.8e-44 181.0 106 81.1
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 6.3e-44 180.6 107 83.2
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 8.2e-44 180.3 108 80.6
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 81.3
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 81.3
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 8.2e-44 180.3 107 80.4
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 1.1e-43 179.9 102 84.3
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 1.1e-43 179.9 105 83.8
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.1e-43 179.9 106 81.1
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 1.1e-43 179.9 109 82.6
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 1.8e-43 179.1 104 80.8
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 1.8e-43 179.1 107 78.5
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.8e-43 179.1 106 84.0
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 2.4e-43 178.7 104 80.8
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 2.4e-43 178.7 102 86.3
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 2.4e-43 178.7 107 80.4
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 2.4e-43 178.7 107 80.4
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 2.4e-43 178.7 106 81.1
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 4.1e-43 177.9 104 80.8
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 4.1e-43 177.9 106 81.1
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 5.3e-43 177.6 106 79.2
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 5.3e-43 177.6 106 82.1
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 7.0e-43 177.2 107 79.4
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 7.0e-43 177.2 107 77.6
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 9.1e-43 176.8 104 82.7
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.2e-42 176.4 107 80.4
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.6e-42 176.0 107 80.4
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 2.0e-42 175.6 105 81.9
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 3.5e-42 174.9 108 78.7
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 3.5e-42 174.9 106 79.2
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 3.5e-42 174.9 106 79.2
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 4.5e-42 174.5 106 79.2
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.5e-42 174.5 106 79.2
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.5e-42 174.5 106 79.2
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.5e-42 174.5 106 79.2
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 4.5e-42 174.5 106 79.2
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 1.3e-41 172.9 107 79.4
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 2.2e-41 172.2 104 78.8
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 2.9e-41 171.8 109 77.1
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 2.9e-41 171.8 104 77.9
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 2.9e-41 171.8 98 86.7
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 5.0e-41 171.0 103 77.7
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 6.5e-41 170.6 100 81.0
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.1e-40 169.9 101 79.2
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.1e-40 169.9 109 75.2
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.1e-40 169.9 109 75.2
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 1.1e-40 169.9 98 86.7
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.5e-40 169.5 108 75.9
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 1.5e-40 169.5 98 81.6
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 1.5e-40 169.5 105 81.0
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 2.5e-40 168.7 101 79.2
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 4.2e-40 167.9 103 76.7
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 5.5e-40 167.5 106 78.3
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 7.2e-40 167.2 103 76.7
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 1.2e-39 166.4 106 79.2
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 6.1e-39 164.1 98 79.6
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 1.4e-38 162.9 106 75.5
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 1.8e-38 162.5 101 82.2
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 2.3e-38 162.2 111 72.1
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 6.7e-38 160.6 100 78.0
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 2.0e-37 159.1 100 81.0
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 5.7e-37 157.5 106 74.5
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 9.7e-37 156.8 95 81.1
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.8e-36 155.2 98 77.6
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 3.1e-35 151.8 106 70.8
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 7.0e-35 150.6 106 67.9
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 7.0e-35 150.6 106 69.8
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 9.1e-35 150.2 106 67.9
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 2.7e-34 148.7 106 67.0
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 2.7e-34 148.7 106 68.9
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 5.9e-34 147.5 106 67.9
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 5.9e-34 147.5 106 67.9
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 7.7e-34 147.1 98 71.4
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 7.7e-34 147.1 106 67.9
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 1.3e-33 146.4 106 68.9
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 1.3e-33 146.4 98 71.4
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 3.8e-33 144.8 109 70.6
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 6.5e-33 144.1 106 67.0
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 6.5e-33 144.1 100 69.0
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 8.5e-33 143.7 106 66.0
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-32 142.9 107 67.3
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-32 142.9 107 67.3
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.5e-32 142.9 107 67.3
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.5e-32 142.9 107 67.3
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 3.2e-32 141.7 99 70.7
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 4.2e-32 141.4 106 66.0
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 8.0e-31 137.1 103 67.0
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 3.0e-30 135.2 87 75.9
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 1.5e-29 132.9 104 69.2
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 4.4e-29 131.3 94 75.5
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 4.8e-28 127.9 66 92.4
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 7.0e-27 124.0 106 56.6
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 1.6e-26 122.9 81 71.6
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 8.6e-25 117.1 96 63.5
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 1.9e-24 115.9 96 63.5
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 5.5e-24 114.4 90 65.6
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 9.5e-24 113.6 65 81.5
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 9.5e-24 113.6 92 62.0
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 1.6e-23 112.8 75 77.3
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 6.1e-23 110.9 87 64.4
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 3.4e-21 105.1 56 89.3
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 9.8e-21 103.6 97 56.7
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 1.7e-20 102.8 90 57.8
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 7.0e-19 97.4 56 82.1
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 1.6e-18 96.3 87 57.5
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 5.9e-18 94.4 56 78.6
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.7e-17 92.8 78 62.8
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 3.3e-16 88.6 58 75.9
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 7.3e-16 87.4 57 78.9
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 1.1e-11 73.6 87 46.0
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 1.9e-11 72.8 106 40.6
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 1.3e-09 66.6 46 76.1
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 3.6e-07 58.5 88 42.0


User provided reference genes

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