Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 6.5e-216 753.8 393 100.0
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.9e-183 646.0 410 82.9
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 6.1e-182 641.0 405 83.7
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 5.4e-178 627.9 406 82.0
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 5.4e-178 627.9 406 82.0
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.1e-175 620.2 406 81.0
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 2.8e-174 615.5 404 79.5
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.4e-165 586.6 404 75.5
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 1.8e-165 586.3 403 77.4
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 4.4e-164 581.6 406 75.1
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 5.1e-160 568.2 404 74.0
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 2.5e-159 565.8 404 73.8
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 7.3e-159 564.3 405 72.8
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 6.2e-158 561.2 404 72.3
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 8.1e-158 560.8 404 71.8
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.8e-157 559.7 406 72.7
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.1e-157 558.9 404 71.5
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 3.1e-157 558.9 404 71.5
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 6.8e-157 557.8 419 69.2
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 8.9e-157 557.4 399 73.7
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.9e-155 552.4 399 71.9
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 3.8e-155 552.0 404 71.3
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 1.2e-153 547.0 405 70.6
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 1.2e-153 547.0 405 70.6
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 1.2e-153 547.0 408 71.1
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.1e-153 546.2 404 71.3
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 3.0e-152 542.3 405 69.6
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 6.6e-152 541.2 402 70.4
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 8.6e-152 540.8 399 70.7
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 4.3e-151 538.5 382 75.1
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 7.3e-151 537.7 407 69.5
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 9.6e-151 537.3 404 68.8
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 9.6e-151 537.3 414 69.1
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 9.6e-151 537.3 406 70.0
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 9.6e-151 537.3 406 70.0
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 2.1e-150 536.2 404 69.1
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 2.8e-150 535.8 404 68.3
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 4.7e-150 535.0 404 69.3
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 1.1e-149 533.9 453 63.6
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 1.8e-149 533.1 407 69.5
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 4.0e-149 531.9 402 69.9
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 4.0e-149 531.9 409 69.4
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 4.4e-148 528.5 400 69.0
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 7.6e-148 527.7 408 68.6
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 7.6e-148 527.7 409 68.9
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 9.9e-148 527.3 400 69.5
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.3e-147 526.9 403 69.2
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 1.3e-147 526.9 409 68.0
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 2.2e-147 526.2 405 68.6
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 2.2e-147 526.2 398 69.1
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 2.9e-147 525.8 404 67.6
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 2.9e-147 525.8 408 67.2
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 2.9e-147 525.8 409 68.7
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 4.9e-147 525.0 404 67.8
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 4.9e-147 525.0 404 68.3
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 6.4e-147 524.6 404 67.6
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 8.4e-147 524.2 406 69.7
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.1e-146 523.9 409 67.5
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.1e-146 523.9 442 69.0
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 1.9e-146 523.1 409 67.2
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.2e-146 522.3 409 67.5
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 7.1e-146 521.2 450 62.4
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 9.3e-146 520.8 409 67.0
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 9.3e-146 520.8 405 67.2
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 9.3e-146 520.8 405 67.7
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.6e-145 520.0 405 70.1
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 1.0e-144 517.3 402 67.2
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.3e-144 516.9 406 67.2
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.0e-144 515.8 409 66.7
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.9e-144 515.4 400 68.0
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 5.1e-144 515.0 405 67.9
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.5e-143 513.5 443 64.1
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.3e-142 510.4 406 67.0
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 2.8e-142 509.2 439 61.5
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 8.1e-142 507.7 401 66.8
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 8.1e-142 507.7 406 67.2
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 6.9e-141 504.6 402 65.9
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 1.5e-140 503.4 406 67.2
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 4.5e-140 501.9 389 67.6
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.8e-139 498.8 294 87.4
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 4.9e-139 498.4 405 65.4
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.9e-139 498.4 394 66.2
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.9e-138 496.5 410 65.1
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 1.9e-138 496.5 401 65.8
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 2.4e-138 496.1 406 64.8
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 2.4e-138 496.1 406 64.8
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 2.4e-138 496.1 402 64.7
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 3.2e-138 495.7 406 64.8
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.2e-138 495.7 404 65.1
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 3.2e-138 495.7 400 66.5
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 4.2e-138 495.4 402 64.4
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 7.1e-138 494.6 404 64.6
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 7.1e-138 494.6 404 64.6
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.6e-137 493.4 402 64.7
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 1.6e-137 493.4 402 64.7
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 2.1e-137 493.0 406 64.3
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 3.5e-137 492.3 406 64.3
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 7.9e-137 491.1 412 64.8
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 1.0e-136 490.7 406 64.0
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.9e-136 488.8 430 61.4
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.5e-135 486.1 402 64.7
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 5.6e-135 485.0 399 65.2
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 7.4e-135 484.6 404 66.6
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 7.4e-135 484.6 410 62.7
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.3e-134 483.8 406 63.1
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.6e-134 483.4 412 63.3
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.1e-133 480.7 406 63.1
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 1.4e-133 480.3 404 62.9
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 3.1e-133 479.2 397 63.0
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 9.0e-133 477.6 408 61.3
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.3e-131 473.8 402 63.4
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.1e-130 470.7 404 62.4
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 4.6e-129 465.3 406 61.3
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 4.6e-129 465.3 404 61.4
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 6.2e-126 454.9 408 59.1
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.7e-123 446.8 399 60.4
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 2.2e-123 446.4 404 56.7
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 6.5e-123 444.9 336 69.6
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 4.2e-122 442.2 420 60.0
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 1.1e-119 434.1 403 59.8
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.8e-110 402.1 519 47.4
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 4.8e-110 402.1 375 56.8
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 1.2e-105 387.5 361 59.6
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.3e-103 379.4 376 56.6
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 5.0e-99 365.5 404 51.7
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 6.1e-97 358.6 435 48.7
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 3.3e-95 352.8 404 52.5
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.1e-90 337.8 406 47.0
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.1e-90 337.8 406 47.0
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.1e-85 321.2 383 52.5
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 1.2e-79 301.2 398 44.2
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 1.9e-74 283.9 406 41.4
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 4.2e-74 282.7 375 48.3
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 2.0e-63 247.3 203 66.5
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 4.9e-62 242.7 273 53.1
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 6.4e-54 215.7 358 39.9
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 9.2e-53 211.8 430 35.6
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.6e-44 183.0 299 39.5
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.8e-38 163.3 117 71.8
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.7e-27 127.9 115 60.9
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 4.8e-25 119.8 69 87.0
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.4e-24 117.5 95 60.0
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 3.4e-23 113.6 93 63.4
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.1e-21 108.6 82 69.5
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.4e-21 108.2 162 43.8
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 1.5e-15 88.2 102 51.0
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 2.4e-13 80.9 412 25.2
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 4.6e-12 76.6 259 28.2
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 3.3e-10 70.5 55 69.1
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 3.7e-09 67.0 128 33.6
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 8.2e-09 65.9 49 65.3
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.4e-08 65.1 315 25.7
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 4.5e-07 60.1 34 79.4
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 2.2e-06 57.8 86 40.7
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 2.9e-06 57.4 37 81.1
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 3.8e-06 57.0 369 24.4
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 4.9e-06 56.6 68 42.6


User provided reference genes

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