Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005123g0010 Nicotiana tabacum HOM05D014113 ORTHO05D004737 3.1e-101 371.7 174 100.0
Nitab4.5_0008658g0020 Nicotiana tabacum HOM05D014113 ORTHO05D012820 3.3e-63 245.4 171 74.9
Nitab4.5_0007235g0010 Nicotiana tabacum HOM05D014113 ORTHO05D283086 1.2e-57 226.9 132 82.6
Nitab4.5_0005651g0040 Nicotiana tabacum HOM05D014113 ORTHO05D285372 1.0e-51 207.2 189 57.7
Nitab4.5_0014173g0020 Nicotiana tabacum HOM05D014113 ORTHO05D004737 1.2e-41 173.7 152 63.2
Nitab4.5_0006104g0020 Nicotiana tabacum HOM05D014113 ORTHO05D283895 1.0e-40 170.6 170 53.5
Nitab4.5_0003084g0030 Nicotiana tabacum HOM05D014113 ORTHO05D282805 4.5e-36 155.2 184 48.4
Nitab4.5_0009508g0010 Nicotiana tabacum HOM05D014113 ORTHO05D004737 9.4e-34 147.5 128 62.5
Nitab4.5_0008276g0030 Nicotiana tabacum HOM05D000229 ORTHO05D005155 1.4e-32 143.7 83 80.7
Nitab4.5_0003807g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 3.3e-26 122.5 129 50.4
Nitab4.5_0002575g0060 Nicotiana tabacum HOM05D000688 ORTHO05D004737 4.2e-26 122.1 90 70.0
Peaxi162Scf00408g00711 Petunia axillaris HOM05D000688 ORTHO05D004737 5.5e-26 121.7 90 68.9
Nitab4.5_0006627g0050 Nicotiana tabacum HOM05D000688 ORTHO05D004737 7.2e-26 121.3 90 68.9
Nitab4.5_0005346g0010 Nicotiana tabacum HOM05D000688 ORTHO05D012820 9.5e-26 120.9 85 69.4
Nitab4.5_0006753g0010 Nicotiana tabacum HOM05D000688 ORTHO05D004737 2.1e-25 119.8 90 67.8
CAN.G352.64 Capsicum annuum HOM05D000688 ORTHO05D004737 4.7e-25 118.6 90 67.8
Sopen08g024590 Solanum pennellii HOM05D000688 ORTHO05D004737 8.0e-25 117.9 90 67.8
PGSC0003DMG400030880 Solanum tuberosum HOM05D000688 ORTHO05D004737 8.0e-25 117.9 90 66.7
Solyc03g110880.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 1.0e-24 117.5 90 66.7
Sopen03g030070 Solanum pennellii HOM05D000688 ORTHO05D004737 1.0e-24 117.5 90 66.7
PGSC0003DMG400015258 Solanum tuberosum HOM05D000688 ORTHO05D004737 1.0e-24 117.5 90 66.7
Nitab4.5_0001723g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 1.4e-24 117.1 88 67.0
Solyc08g075940.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 5.2e-24 115.2 90 66.7
CAN.G1269.4 Capsicum annuum HOM05D000688 ORTHO05D004737 2.6e-23 112.8 90 64.4
MSTRG.1633 Avicennia marina HOM05D000688 ORTHO05D004737 3.7e-22 109.0 91 64.8
Oeu019307.1 Olea europaea HOM05D000688 ORTHO05D004737 8.3e-22 107.8 91 62.6
Hma1.2p1_2081F.1_g313530 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 1.8e-21 106.7 91 61.5
Hma1.2p1_2362F.1_g320630 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 1.8e-21 106.7 91 61.5
SHI21063 Sapria himalayana HOM05D000688 ORTHO05D004737 1.8e-21 106.7 91 61.5
Cc01_g06880 Coffea canephora HOM05D000688 ORTHO05D004737 4.1e-21 105.5 91 60.4
SGA_v2.0_scaffold169G38607 Striga asiatica HOM05D000688 ORTHO05D004737 7.0e-21 104.8 91 59.3
unitig_8.g3063 Utricularia gibba HOM05D000688 ORTHO05D004737 7.0e-21 104.8 94 59.6
SalBow6G4737 Salvia bowleyana HOM05D000688 ORTHO05D004737 9.2e-21 104.4 70 75.7
Dinv40966 Davidia involucrata HOM05D000688 ORTHO05D004737 1.2e-20 104.0 70 74.3
Lsat_1_v5_gn_9_69261 Lactuca sativa HOM05D000688 ORTHO05D004737 1.2e-20 104.0 91 59.3
AUR62038757 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.6e-20 103.6 91 60.4
Manes.03G009000 Manihot esculenta HOM05D000688 ORTHO05D004737 1.6e-20 103.6 70 72.9
ClCG05G016300 Citrullus lanatus HOM05D000688 ORTHO05D004737 2.0e-20 103.2 70 72.9
COL.COLO4_18947 Corchorus olitorius HOM05D000688 ORTHO05D004737 2.0e-20 103.2 70 70.0
MELO3C016960.2 Cucumis melo HOM05D000688 ORTHO05D004737 2.0e-20 103.2 70 72.9
Eucgr.C00069 Eucalyptus grandis HOM05D000688 ORTHO05D004737 2.0e-20 103.2 91 60.4
Lj8A737G24 Lonicera japonica HOM05D000688 ORTHO05D004737 2.7e-20 102.8 70 74.3
QL02p018902 Quercus lobata HOM05D000688 ORTHO05D004737 2.7e-20 102.8 70 72.9
Sabra18G0021700 Salix brachista HOM05D000688 ORTHO05D004737 2.7e-20 102.8 91 59.3
SalBow6G0619 Salvia bowleyana HOM05D000688 ORTHO05D004737 2.7e-20 102.8 70 74.3
Dinv03974 Davidia involucrata HOM05D000688 ORTHO05D004737 4.5e-20 102.1 70 72.9
Migut.E01463 Erythranthe guttata HOM05D000688 ORTHO05D004737 4.5e-20 102.1 93 57.0
CANSAT25G1723 Cannabis sativa HOM05D000688 ORTHO05D004737 7.8e-20 101.3 70 71.4
GSVIVG01035963001 Vitis vinifera HOM05D000688 ORTHO05D004737 7.8e-20 101.3 70 71.4
AUR62020625 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.0e-19 100.9 91 58.2
ECA238G1344 Erigeron canadensis HOM05D000688 ORTHO05D004737 1.0e-19 100.9 70 65.7
Nitab4.5_0002565g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 1.0e-19 100.9 74 70.3
Nitab4.5_0014402g0010 Nicotiana tabacum HOM05D014113 ORTHO05D012820 1.0e-19 100.9 53 84.9
Sed0003356 Sechium edule HOM05D000688 ORTHO05D004737 1.0e-19 100.9 70 71.4
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 1.0e-19 100.9 70 70.0
COL.COLO4_29107 Corchorus olitorius HOM05D000688 ORTHO05D004737 1.3e-19 100.5 70 68.6
CsaV3_4G036560 Cucumis sativus L. HOM05D000688 ORTHO05D004737 1.3e-19 100.5 70 71.4
RcHm_v2.0_Chr5g0042281 Rosa chinensis HOM05D000688 ORTHO05D004737 2.3e-19 99.8 90 55.6
Manes.16G129400 Manihot esculenta HOM05D000688 ORTHO05D004737 2.9e-19 99.4 70 68.6
PGR142G2531 Punica granatum HOM05D000688 ORTHO05D004737 2.9e-19 99.4 70 70.0
PGR142G3000 Punica granatum HOM05D000688 ORTHO05D004737 2.9e-19 99.4 70 70.0
CSS0020218 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 5.0e-19 98.6 70 70.0
Psat5g032960 Pisum sativum HOM05D000688 ORTHO05D004737 5.0e-19 98.6 91 56.0
Cc08_g05510 Coffea canephora HOM05D000688 ORTHO05D004737 8.6e-19 97.8 91 54.9
DCAR_009948 Daucus carota HOM05D000688 ORTHO05D004737 8.6e-19 97.8 70 68.6
Aqoxy5G02323 Aquilegia oxysepala HOM05D000688 ORTHO05D004737 1.1e-18 97.4 70 64.3
Prupe.1G393500 Prunus persica HOM05D000688 ORTHO05D004737 1.1e-18 97.4 70 65.7
arahy.Tifrunner.gnm1.ann1.35ZHP3 Arachis hypogaea HOM05D000688 ORTHO05D004737 1.5e-18 97.1 70 68.6
arahy.Tifrunner.gnm1.ann1.QT4Q57 Arachis hypogaea HOM05D000688 ORTHO05D004737 1.5e-18 97.1 70 68.6
Lj1g0018077 Lotus japonicus HOM05D000688 ORTHO05D004737 1.5e-18 97.1 70 68.6
Medtr3g105990 Medicago truncatula HOM05D000688 ORTHO05D004737 1.5e-18 97.1 70 68.6
TPR.G1854 Trifolium pratense HOM05D000688 ORTHO05D004737 1.5e-18 97.1 70 68.6
Ca_15777_v3 Cicer arietinum L. HOM05D000688 ORTHO05D004737 1.9e-18 96.7 70 68.6
TWI63G0903 Tripterygium wilfordii HOM05D000688 ORTHO05D004737 2.5e-18 96.3 70 65.7
Lalb_Chr23g0268231 Lupinus albus HOM05D000688 ORTHO05D004737 3.3e-18 95.9 70 68.6
DCAR_022858 Daucus carota HOM05D000688 ORTHO05D004737 4.3e-18 95.5 91 53.8
Lalb_Chr08g0244431 Lupinus albus HOM05D000688 ORTHO05D004737 4.3e-18 95.5 70 68.6
Thhalv10019931m.g Eutrema salsugineum HOM05D000688 ORTHO05D004737 5.6e-18 95.1 92 54.3
Ciclev10018562m.g Citrus clementina HOM05D000688 ORTHO05D004737 1.2e-17 94.0 70 65.7
Glyma.06G061600 Glycine max HOM05D000688 ORTHO05D004737 1.2e-17 94.0 70 67.1
PSO017G0269 Papaver somniferum HOM05D000688 ORTHO05D004737 1.2e-17 94.0 71 64.8
PSO478G0475 Papaver somniferum HOM05D000688 ORTHO05D004737 1.2e-17 94.0 71 64.8
Sp3g16210 Schrenkiella parvula HOM05D000688 ORTHO05D004737 1.2e-17 94.0 91 52.7
Carub.0003s1782 Capsella rubella HOM05D000688 ORTHO05D004737 2.1e-17 93.2 91 53.8
CARHR094240 Cardamine hirsuta HOM05D000688 ORTHO05D004737 2.8e-17 92.8 91 53.8
Phvul.009G087100 Phaseolus vulgaris HOM05D000688 ORTHO05D004737 2.8e-17 92.8 70 68.6
RcHm_v2.0_Chr2g0092681 Rosa chinensis HOM05D000688 ORTHO05D004737 2.8e-17 92.8 70 65.7
Duzib168G0339 Durio zibethinus HOM05D000688 ORTHO05D004737 3.6e-17 92.4 70 62.9
Gohir.A07G032700 Gossypium hirsutum HOM05D000688 ORTHO05D004737 3.6e-17 92.4 70 62.9
Aa31LG8G4940 Aethionema arabicum HOM05D000688 ORTHO05D004737 6.1e-17 91.7 67 62.7
FvH4_1g06870 Fragaria vesca HOM05D000688 ORTHO05D004737 6.1e-17 91.7 70 62.9
FAN19G0885 Fragaria x ananassa HOM05D000688 ORTHO05D004737 6.1e-17 91.7 70 62.9
FAN23G1159 Fragaria x ananassa HOM05D000688 ORTHO05D004737 6.1e-17 91.7 70 62.9
FAN26G2550 Fragaria x ananassa HOM05D000688 ORTHO05D004737 6.1e-17 91.7 70 62.9
FAN26G3128 Fragaria x ananassa HOM05D000688 ORTHO05D004737 6.1e-17 91.7 70 62.9
FAN28G1036 Fragaria x ananassa HOM05D000688 ORTHO05D004737 6.1e-17 91.7 70 62.9
Glyma.04G061000 Glycine max HOM05D000688 ORTHO05D004737 6.1e-17 91.7 70 65.7
Gohir.D07G036000 Gossypium hirsutum HOM05D000688 ORTHO05D004737 6.1e-17 91.7 70 62.9
Gorai.001G037900 Gossypium raimondii HOM05D000688 ORTHO05D004737 6.1e-17 91.7 70 62.9
MD08G1057300 Malus domestica HOM05D000688 ORTHO05D004737 6.1e-17 91.7 70 64.3
MD15G1040100 Malus domestica HOM05D000688 ORTHO05D004737 6.1e-17 91.7 70 64.3
CDE08G0368 Ceratophyllum demersum HOM05D000688 ORTHO05D004737 8.0e-17 91.3 70 65.7
VMungo1309G2219 Vigna mungo HOM05D000688 ORTHO05D004737 8.0e-17 91.3 70 67.1
AL3G31250 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 1.0e-16 90.9 91 52.7
DCAR_003109 Daucus carota HOM05D000688 ORTHO05D004737 1.0e-16 90.9 91 52.7
AL3G38680 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 1.4e-16 90.5 91 52.7
AT3G23780 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 1.4e-16 90.5 91 52.7
ATR0564G243 Amborella trichopoda HOM05D000688 ORTHO05D004737 3.0e-16 89.4 69 60.9
A05p31700 Brassica napus HOM05D000688 ORTHO05D004737 4.0e-16 89.0 70 61.4
C05p48100 Brassica napus HOM05D000688 ORTHO05D004737 4.0e-16 89.0 70 61.4
BraA05t22003Z Brassica rapa HOM05D000688 ORTHO05D004737 4.0e-16 89.0 70 61.4
Zm00001eb068960 Zea mays HOM05D000688 ORTHO05D004737 6.8e-16 88.2 70 61.4
Zm00001eb431870 Zea mays HOM05D000688 ORTHO05D004737 6.8e-16 88.2 70 61.4
RcHm_v2.0_Chr5g0042221 Rosa chinensis HOM05D000688 ORTHO05D012820 8.9e-16 87.8 69 60.9
THA.LOC104812243 Tarenaya hassleriana HOM05D000688 ORTHO05D004737 2.0e-15 86.7 69 58.0
Zm00001eb415030 Zea mays HOM05D000688 ORTHO05D004737 2.6e-15 86.3 72 58.3
BcaC05g28676 Brassica carinata HOM05D000688 ORTHO05D004737 5.8e-15 85.1 70 60.0
BolC5t33527H Brassica oleracea HOM05D000688 ORTHO05D004737 5.8e-15 85.1 70 60.0
Os04g0641000 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 7.5e-15 84.7 70 58.6
CiPaw.07G230000 Carya illinoinensis HOM05D000688 ORTHO05D004737 9.8e-15 84.3 57 75.4
Os08g0171600 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 2.9e-14 82.8 74 52.7
Potri.018G019100 Populus trichocarpa HOM05D000688 ORTHO05D004737 2.9e-14 82.8 57 73.7
COL.COLO4_35449 Corchorus olitorius HOM05D000688 ORTHO05D004737 3.7e-14 82.4 70 60.0
Cpa.g.sc127.33 Carica papaya HOM05D000688 ORTHO05D004737 2.4e-13 79.7 56 71.4
vmacro13779 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 2.4e-13 79.7 56 71.4
Haze_21420 Corylus avellana HOM05D000688 ORTHO05D004737 9.2e-13 77.8 55 72.7
AUR62009365 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.2e-12 77.4 55 70.9
AUR62023046 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.2e-12 77.4 55 70.9
EL10Ac2g04112 Beta vulgaris HOM05D000688 ORTHO05D004737 1.6e-12 77.0 55 69.1
Nitab4.5_0010875g0010 Nicotiana tabacum HOM05D014113 ORTHO05D285585 1.6e-12 77.0 42 81.0
Ah.16g104830 Amaranthus hybridus HOM05D000688 ORTHO05D004737 2.0e-12 76.6 55 69.1
BolC5t33519H Brassica oleracea HOM05D000688 ORTHO05D012820 2.0e-12 76.6 57 64.9
SEGI_32927 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 2.7e-12 76.3 66 54.5
SEGI_35893 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 2.7e-12 76.3 66 56.1
CSS0012771 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 3.5e-12 75.9 55 70.9
CSS0012935 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 3.5e-12 75.9 55 70.9
CSS0050165 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 3.5e-12 75.9 55 70.9
Hund19557 Selenicereus undatus HOM05D000688 ORTHO05D004737 3.5e-12 75.9 55 69.1
Actinidia10520 Actinidia chinensis HOM05D000688 ORTHO05D004737 6.0e-12 75.1 55 69.1
ECA232G0687 Erigeron canadensis HOM05D000688 ORTHO05D004737 6.0e-12 75.1 55 69.1
HanXRQChr11g0320381 Helianthus annuus HOM05D000688 ORTHO05D004737 7.8e-12 74.7 55 69.1
HanXRQChr15g0484591 Helianthus annuus HOM05D000688 ORTHO05D004737 7.8e-12 74.7 55 69.1
Nitab4.5_0001583g0080 Nicotiana tabacum HOM05D000688 ORTHO05D012820 7.8e-12 74.7 61 62.3
Rhsim02G0213200 Rhododendron simsii HOM05D000688 ORTHO05D004737 7.8e-12 74.7 55 69.1
vmacro11243 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 7.8e-12 74.7 55 69.1
Lj7C733G5 Lonicera japonica HOM05D000688 ORTHO05D004737 1.0e-11 74.3 55 69.1
BolC5t33550H Brassica oleracea HOM05D000688 ORTHO05D012820 1.7e-11 73.6 57 63.2
HanXRQChr01g0011481 Helianthus annuus HOM05D000688 ORTHO05D004737 2.3e-11 73.2 55 61.8
Lsat_1_v5_gn_2_114740 Lactuca sativa HOM05D000688 ORTHO05D004737 2.3e-11 73.2 55 61.8
ECA238G0018 Erigeron canadensis HOM05D000688 ORTHO05D004737 3.0e-11 72.8 55 61.8
Thecc.09G016000 Theobroma cacao HOM05D000688 ORTHO05D004737 3.0e-11 72.8 55 67.3
Nitab4.5_0004881g0090 Nicotiana tabacum HOM05D000688 ORTHO05D012820 5.0e-11 72.0 88 50.0
SEGI_08147 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 1.5e-10 70.5 66 54.5
Nn1g00540 Nelumbo nucifera HOM05D000688 ORTHO05D004737 5.6e-10 68.6 55 63.6
Mapoly0058s0108 Marchantia polymorpha HOM05D000688 ORTHO05D004737 1.6e-09 67.0 91 42.9
TAR624G0960 Trochodendron aralioides HOM05D000688 ORTHO05D004737 1.8e-08 63.5 55 61.8
Potri.006G263900 Populus trichocarpa HOM05D000688 ORTHO05D004737 3.4e-07 59.3 37 73.0
MBI05_g00401_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D004737 4.4e-07 58.9 55 56.4
Pp3c4_16140 Physcomitrium patens HOM05D000688 ORTHO05D004737 2.9e-06 56.2 64 39.1
SMO228G0181 Selaginella moellendorffii HOM05D000688 ORTHO05D004737 8.3e-06 54.7 54 44.4


User provided reference genes

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