Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.7e-243 843.2 419 100.0
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.0e-206 723.4 401 89.0
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 7.0e-200 700.7 416 81.2
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 2.5e-197 692.2 413 82.1
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 1.4e-195 686.4 416 80.3
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 2.3e-195 685.6 418 80.6
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 3.3e-194 681.8 416 80.0
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 3.3e-173 612.1 392 78.8
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 1.2e-156 557.0 398 72.4
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 4.0e-147 525.4 423 61.9
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 2.5e-141 506.1 422 62.3
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 5.6e-141 505.0 395 63.5
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 1.2e-140 503.8 423 59.8
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-140 503.8 325 79.4
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 5.2e-139 498.4 422 60.2
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 4.9e-137 491.9 419 58.5
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 4.2e-136 488.8 421 59.6
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.6e-135 486.9 421 58.2
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 1.0e-134 484.2 424 58.3
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 3.0e-134 482.6 422 56.9
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 8.7e-134 481.1 421 57.5
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 5.6e-133 478.4 391 60.6
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 9.6e-133 477.6 422 57.6
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 1.3e-132 477.2 406 63.1
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.1e-132 476.5 421 57.2
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 8.1e-132 474.6 390 61.3
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 9.0e-131 471.1 421 57.2
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 1.2e-130 470.7 423 57.2
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 1.5e-130 470.3 388 59.0
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 2.0e-130 469.9 420 57.4
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 4.5e-130 468.8 421 57.0
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 4.9e-129 465.3 414 57.2
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 2.1e-127 459.9 421 56.8
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 7.9e-127 458.0 412 55.6
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 1.0e-126 457.6 397 58.9
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 1.0e-126 457.6 423 53.4
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.0e-126 456.1 294 79.9
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 2.5e-125 453.0 392 56.9
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 3.3e-125 452.6 395 56.5
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 3.3e-125 452.6 378 60.3
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 1.4e-123 447.2 392 55.9
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.0e-122 443.4 382 59.9
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 2.6e-122 443.0 391 57.5
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.6e-122 443.0 413 53.8
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 9.9e-122 441.0 413 53.5
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.7e-121 440.3 393 56.0
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 3.8e-121 439.1 421 52.5
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 8.4e-121 438.0 367 60.5
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.9e-120 436.8 391 56.5
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 2.4e-120 436.4 392 56.9
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 2.4e-120 436.4 415 54.7
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.4e-120 436.4 414 53.4
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 2.4e-120 436.4 391 54.7
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 4.6e-119 432.2 394 56.1
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 3.0e-118 429.5 391 55.0
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 3.9e-118 429.1 414 52.7
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 1.1e-117 427.6 393 53.2
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 3.3e-117 426.0 388 55.2
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 1.4e-115 420.6 380 53.9
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 4.0e-115 419.1 423 53.2
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.5e-114 417.2 390 55.9
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 7.6e-114 414.8 395 54.2
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 2.2e-113 413.3 390 55.9
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 1.4e-112 410.6 382 52.9
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 5.5e-112 408.7 392 51.5
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 7.1e-112 408.3 377 52.5
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 1.6e-111 407.1 391 54.0
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 3.5e-111 406.0 389 51.7
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 2.3e-110 403.3 391 51.9
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 5.7e-109 398.7 404 50.2
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 2.8e-108 396.4 407 49.6
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 3.7e-108 396.0 403 50.1
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 4.1e-107 392.5 381 51.2
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 5.3e-107 392.1 407 51.4
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 1.2e-106 391.0 418 50.5
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 1.5e-106 390.6 402 51.2
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 4.5e-106 389.0 396 52.0
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 7.6e-106 388.3 396 52.0
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 2.9e-105 386.3 374 51.6
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.1e-104 384.4 404 51.2
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 1.4e-104 384.0 399 50.9
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 1.9e-104 383.6 396 51.0
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 7.9e-103 378.3 396 50.5
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 3.0e-102 376.3 378 52.4
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 3.9e-102 375.9 396 50.0
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 8.7e-102 374.8 409 49.4
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 8.7e-102 374.8 370 53.2
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 3.3e-101 372.9 392 48.5
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 5.7e-101 372.1 398 49.7
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 3.7e-100 369.4 392 51.8
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 4.8e-100 369.0 395 49.9
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 1.8e-99 367.1 402 47.5
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 6.9e-99 365.2 397 48.4
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 2.0e-98 363.6 369 52.0
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 2.0e-98 363.6 402 47.3
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 2.6e-98 363.2 366 52.5
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.0e-97 361.3 360 53.1
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 1.3e-97 360.9 402 47.3
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 3.8e-97 359.4 402 47.0
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 5.7e-93 345.5 419 47.3
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 2.2e-92 343.6 379 48.5
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 7.4e-85 318.5 253 63.2
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 2.0e-82 310.5 398 43.0
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 3.5e-82 309.7 300 52.3
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.0e-81 308.1 172 87.8
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 1.5e-77 294.3 214 73.8
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 9.1e-75 285.0 322 52.8
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.8e-70 270.8 264 52.3
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 6.8e-70 268.9 225 56.9
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.8e-70 268.5 278 56.5
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 2.0e-69 267.3 248 56.0
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 4.8e-68 262.7 195 71.3
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 1.6e-66 257.7 417 38.8
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.0e-65 255.0 136 90.4
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 1.3e-65 254.6 266 48.9
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 2.3e-65 253.8 207 59.9
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 5.5e-64 249.2 193 59.6
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 6.8e-62 242.3 262 48.9
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.5e-61 241.1 222 55.4
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 8.3e-60 235.3 422 36.3
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 1.4e-59 234.6 171 65.5
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 2.8e-55 220.3 382 34.6
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.1e-51 208.4 212 55.7
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 1.4e-51 208.0 193 52.3
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 2.4e-51 207.2 417 31.7
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-49 201.4 110 90.0
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.9e-48 197.6 111 87.4
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 3.6e-47 193.4 420 31.0
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 8.0e-47 192.2 176 53.4
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.4e-43 180.6 116 80.2
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-42 178.3 116 79.3
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 4.7e-39 166.4 247 41.3
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 1.1e-30 138.7 201 42.8
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.4e-29 133.3 87 79.3
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 6.4e-28 129.4 176 42.6
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.0e-25 122.1 71 84.5
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 2.3e-25 120.9 102 52.9
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 3.0e-25 120.6 86 68.6
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 1.3e-20 105.1 96 50.0
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 7.9e-10 69.3 53 64.2
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 2.5e-08 64.3 80 36.2
Peaxi162Scf00365g00014 Petunia axillaris HOM05D000001 ORTHO05D004044 5.3e-06 56.6 105 41.9


User provided reference genes

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