Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 3983.7 2127 100.0
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 3666.7 2159 92.2
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 3336.6 2176 84.1
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 3324.6 2176 83.8
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 3313.5 2178 83.3
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 2431.4 2194 62.3
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2408.3 2199 62.7
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 2269.2 2170 60.2
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2254.6 2205 58.9
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 2219.5 2187 58.6
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2210.6 2206 58.4
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 2187.9 2201 57.4
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2102.0 2200 57.1
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 2099.7 2185 57.2
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2072.0 2186 55.5
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2072.0 2172 55.8
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2067.0 2185 55.6
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2066.6 2198 56.1
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2066.2 2202 55.5
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2062.0 1720 65.1
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2031.1 2197 55.6
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2023.1 2172 54.8
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2020.7 2173 55.5
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2018.8 2185 54.3
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2012.3 2188 54.5
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 2009.2 2246 53.4
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 2006.9 2173 55.3
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1992.6 2215 53.5
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1989.9 2246 53.0
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 1988.8 2211 55.2
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 1983.4 2187 54.6
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 1980.3 2197 54.5
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1979.9 2245 52.7
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1979.1 2311 52.6
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1975.7 2193 54.3
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 1966.4 2244 53.8
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1959.1 2257 52.2
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1949.5 2193 53.9
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 1930.2 2176 53.5
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 1927.5 2269 52.3
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1908.3 2134 53.7
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1894.8 2198 52.1
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 1880.5 2163 53.6
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1874.0 2170 51.8
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1871.7 2210 51.8
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 1870.5 2270 50.7
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 1867.4 2220 51.5
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 1867.0 2191 51.7
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1862.0 2271 51.0
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 1856.6 2199 50.9
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1850.9 2194 50.8
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 1849.3 2210 51.4
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 1848.9 2197 51.6
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 1848.2 2194 51.5
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1845.9 2205 51.3
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1840.1 2271 50.3
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1835.1 2200 50.8
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1820.8 2155 52.3
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 1817.4 2191 50.8
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1809.7 2215 49.3
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1803.5 1907 54.0
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 1794.2 2217 50.3
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1780.4 2200 50.5
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 1774.2 2249 50.0
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 1773.1 2216 50.2
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1763.4 1981 53.5
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1756.5 1983 52.7
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1755.0 2163 50.3
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1727.2 2199 48.9
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1723.4 2126 50.0
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1718.4 1391 64.3
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1715.3 1392 64.2
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 1701.8 2189 48.8
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 1687.9 2156 48.1
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 1681.8 2140 48.7
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 1677.1 2161 48.3
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 1662.5 2164 48.0
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1659.0 2162 47.8
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1654.0 2148 47.9
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1644.0 2164 47.6
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1637.5 2157 47.7
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1637.1 2127 48.0
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1628.2 2154 47.6
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1617.8 2173 47.2
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1607.4 2153 47.1
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1600.9 2175 46.9
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1553.1 1391 59.2
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1544.6 1230 66.2
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1543.5 2045 46.7
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1452.6 1426 55.9
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1411.0 2224 43.6
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1320.8 2162 41.0
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1301.6 2243 41.2
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 0.0e+00 1193.7 901 79.1
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1118.2 1434 50.1
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 1.8e-307 1060.4 1605 45.0
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 3.5e-295 1019.6 817 65.9
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 1.5e-293 1014.2 1362 49.9
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 8.6e-270 935.3 1333 47.1
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 2.7e-263 913.7 1315 44.5
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 4.0e-251 873.2 1265 47.3
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 7.6e-242 842.4 1205 46.4
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 2.1e-239 834.3 1117 44.7
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 3.0e-198 697.6 1705 31.6
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 8.3e-172 609.8 808 55.3
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 8.3e-172 609.8 808 55.3
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 5.2e-166 590.5 486 61.7
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 6.4e-164 583.6 978 41.4
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 1.2e-141 509.6 1669 28.6
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 1.1e-139 503.1 833 48.5
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 6.6e-137 493.8 277 89.9
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 9.6e-128 463.4 1109 35.1
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 4.0e-126 458.0 426 54.5
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 4.6e-122 444.5 994 38.8
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.4e-118 433.0 647 43.7
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 2.9e-116 425.2 1459 27.3
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 9.7e-112 410.2 343 62.4
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 1.8e-102 379.4 909 35.3
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 1.2e-77 297.0 1891 23.4
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 2.0e-77 296.2 215 67.4
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 4.2e-75 288.5 296 54.7
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.7e-71 276.6 385 40.3
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 7.2e-67 261.2 163 79.8
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 6.1e-66 258.1 434 44.0
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 8.9e-57 227.6 153 73.9
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 6.4e-55 221.5 330 42.1
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 1.8e-49 203.4 330 39.4
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 4.0e-49 202.2 423 42.1
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 1.4e-46 193.7 202 66.8
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 3.9e-44 185.7 137 64.2
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 2.2e-39 169.9 679 32.8
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 3.7e-39 169.1 242 47.5
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 6.4e-39 168.3 112 76.8
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 1.8e-33 150.2 327 32.7
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 2.9e-31 142.9 208 41.8
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 2.9e-31 142.9 126 56.3
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 2.9e-31 142.9 180 50.6
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 6.4e-31 141.7 542 27.5
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 2.7e-29 136.3 417 39.3
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 8.4e-23 114.8 330 30.6
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.9e-22 113.6 220 33.6
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 2.4e-22 113.2 113 58.4
Nitab4.5_0003731g0040 Nicotiana tabacum HOM05D011943 ORTHO05D015721 1.7e-20 107.1 80 70.0
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-19 104.4 68 75.0
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 1.3e-12 80.9 79 58.2
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 4.8e-10 72.4 199 31.7
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 6.2e-10 72.0 134 32.8
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 1.2e-08 67.8 45 75.6
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.0e-07 64.7 76 56.6
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 8.4e-07 61.6 63 55.6
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 5.5e-06 58.9 65 52.3


User provided reference genes

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