Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.0e-63 246.5 121 100.0
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.2e-58 228.8 120 94.2
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.2e-58 228.8 120 94.2
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.2e-58 228.8 120 94.2
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 1.1e-57 226.5 120 93.3
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 1.1e-57 226.5 120 93.3
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 1.1e-57 226.5 120 93.3
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 3.2e-57 224.9 120 92.5
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 1.6e-56 222.6 120 92.5
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 1.8e-55 219.2 123 89.4
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.2e-54 216.5 123 90.2
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 1.2e-54 216.5 123 90.2
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 4.4e-54 214.5 122 90.2
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.3e-53 213.0 124 87.9
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.3e-53 213.0 124 87.9
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.7e-53 212.6 123 87.8
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 2.8e-53 211.8 124 87.1
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.7e-53 211.5 124 87.1
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 3.7e-53 211.5 123 87.8
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 3.7e-53 211.5 123 87.8
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 3.7e-53 211.5 123 87.8
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 3.7e-53 211.5 123 87.8
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 3.7e-53 211.5 123 87.0
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-53 211.5 123 87.8
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-53 211.5 123 87.8
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-53 211.5 123 87.8
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 3.7e-53 211.5 123 87.8
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 3.7e-53 211.5 123 87.8
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 3.7e-53 211.5 123 88.6
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 4.8e-53 211.1 122 88.5
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-52 209.5 123 86.2
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.8e-52 209.1 123 87.0
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.8e-52 209.1 123 87.8
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 2.4e-52 208.8 122 87.7
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 2.4e-52 208.8 122 87.7
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 3.1e-52 208.4 123 87.0
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 3.1e-52 208.4 124 86.3
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 7.0e-52 207.2 123 85.4
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 9.1e-52 206.8 124 85.5
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 1.6e-51 206.1 123 85.4
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 2.0e-51 205.7 123 86.2
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.0e-51 205.7 123 86.2
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.0e-51 205.7 123 86.2
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.0e-51 205.7 123 86.2
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.0e-51 205.7 123 86.2
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 2.0e-51 205.7 123 86.2
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 2.0e-51 205.7 123 86.2
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 2.0e-51 205.7 123 86.2
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 2.0e-51 205.7 123 86.2
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 2.0e-51 205.7 123 86.2
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 2.0e-51 205.7 123 86.2
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.7e-51 205.3 123 86.2
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 2.7e-51 205.3 123 86.2
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 2.7e-51 205.3 123 86.2
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 4.5e-51 204.5 123 85.4
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 5.9e-51 204.1 119 87.4
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 5.9e-51 204.1 119 87.4
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 7.7e-51 203.8 123 85.4
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 1.0e-50 203.4 122 85.2
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.0e-50 203.4 123 85.4
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.7e-50 202.6 119 86.6
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 8.5e-50 200.3 126 84.1
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 8.5e-50 200.3 120 85.8
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 1.5e-49 199.5 120 86.7
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 1.9e-49 199.1 122 83.6
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 2.1e-48 195.7 122 82.0
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 3.0e-47 191.8 122 81.1
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 4.0e-47 191.4 122 82.0
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.5e-46 189.5 120 82.5
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.1e-44 181.8 113 82.3
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 7.0e-44 180.6 117 81.2
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.7e-43 178.7 101 87.1
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 5.9e-43 177.6 112 82.1
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.3e-42 176.4 120 77.5
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 8.0e-40 167.2 101 81.2
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.0e-39 166.8 89 91.0
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 4.0e-39 164.9 107 80.4
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.2e-39 164.5 91 89.0
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 8.8e-39 163.7 89 89.9
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 2.6e-38 162.2 122 74.6
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 2.6e-38 162.2 106 81.1
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.8e-37 158.7 120 71.7
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.4e-36 156.4 104 77.9
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 7.0e-36 154.1 96 83.3
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.8e-32 142.1 99 75.8
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.3e-31 139.0 82 86.6
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.1e-28 130.2 90 74.4
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 9.2e-28 127.1 99 69.7
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.6e-27 126.3 120 59.2
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 2.0e-27 125.9 99 66.7
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.0e-27 125.9 64 92.2
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 5.0e-26 121.3 61 93.4
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 1.9e-25 119.4 61 93.4
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.5e-25 119.0 66 86.4
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.1e-24 115.9 62 90.3
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.5e-22 107.5 74 75.7
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.3e-18 95.9 49 93.9
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 6.6e-18 94.4 71 69.0
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.5e-17 93.2 63 79.4
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 1.8e-15 86.3 64 67.2
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 8.9e-15 84.0 57 78.9
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 4.4e-14 81.6 48 79.2
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 1.1e-12 77.0 58 74.1
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.9e-12 76.3 49 75.5
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 7.8e-11 70.9 58 70.7
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 9.5e-09 63.9 41 70.7
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 2.1e-08 62.8 53 60.4
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 6.2e-08 61.2 40 77.5
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 2.3e-07 59.3 47 66.0
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 5.2e-07 58.2 32 81.2
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 2.6e-06 55.8 28 89.3
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.4e-06 55.5 34 79.4


User provided reference genes

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