Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.4e-240 835.9 414 100.0
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 9.0e-192 673.7 446 78.0
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 7.6e-191 670.6 446 77.8
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.7e-190 669.5 446 77.8
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 1.1e-189 666.8 441 75.5
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 7.9e-188 660.6 448 73.7
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 3.0e-187 658.7 448 73.9
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 1.8e-184 649.4 448 73.7
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.5e-183 646.4 441 73.0
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 1.4e-176 623.2 446 70.0
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 5.3e-176 621.3 416 76.7
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 6.5e-174 614.4 445 69.7
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 2.1e-172 609.4 447 69.6
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 3.6e-172 608.6 446 67.3
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 1.4e-168 596.7 441 68.5
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 6.9e-168 594.3 447 66.9
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 2.6e-167 592.4 441 68.0
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 5.9e-167 591.3 441 68.3
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 7.7e-167 590.9 447 67.1
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.0e-166 590.5 445 65.8
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 8.5e-166 587.4 429 69.5
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 8.5e-166 587.4 431 68.7
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 4.2e-165 585.1 447 66.0
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 2.7e-164 582.4 443 66.6
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 3.6e-164 582.0 445 66.7
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 7.9e-164 580.9 447 66.2
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 8.8e-163 577.4 447 66.0
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 8.8e-163 577.4 443 65.0
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 1.1e-162 577.0 429 68.1
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.5e-162 576.6 429 68.1
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 2.0e-162 576.2 447 66.4
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 2.6e-162 575.9 429 68.3
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.3e-162 575.5 440 65.9
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 4.4e-162 575.1 443 65.2
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 5.7e-162 574.7 429 67.8
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 5.7e-162 574.7 429 67.8
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 5.7e-162 574.7 447 65.5
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 7.4e-162 574.3 447 65.5
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 9.7e-162 573.9 447 66.9
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.7e-161 573.2 443 66.1
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 1.7e-161 573.2 445 65.4
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 2.2e-161 572.8 438 66.9
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 2.8e-161 572.4 446 64.6
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.3e-161 571.2 447 65.3
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 1.4e-160 570.1 443 64.1
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.8e-160 569.7 444 65.1
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 2.4e-160 569.3 432 67.6
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.1e-160 568.9 429 66.9
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 5.3e-160 568.2 444 64.6
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 7.0e-160 567.8 430 66.5
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 2.6e-159 565.8 444 64.2
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.6e-159 565.8 431 65.9
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.5e-159 565.1 444 64.2
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 4.5e-159 565.1 421 68.2
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 5.9e-159 564.7 449 65.0
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.3e-158 563.5 431 65.4
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 1.3e-158 563.5 446 64.6
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.3e-158 563.5 443 64.3
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.3e-158 563.5 443 64.3
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.7e-158 563.1 448 63.2
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 5.0e-158 561.6 449 64.8
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 5.0e-158 561.6 566 53.7
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 8.5e-158 560.8 444 63.7
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 8.5e-158 560.8 444 63.7
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.1e-157 560.5 445 64.7
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 1.1e-157 560.5 443 63.9
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.9e-157 559.7 447 64.4
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 1.9e-157 559.7 444 63.5
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 3.2e-157 558.9 431 65.2
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 7.2e-157 557.8 446 63.5
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 9.4e-157 557.4 444 63.3
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 9.4e-157 557.4 421 65.6
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 9.4e-157 557.4 438 64.6
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 1.2e-156 557.0 444 63.3
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.2e-156 557.0 303 92.7
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 1.6e-156 556.6 445 63.6
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 2.1e-156 556.2 442 64.3
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 3.6e-156 555.4 447 62.9
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 4.7e-156 555.1 454 63.2
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.0e-155 553.9 447 64.2
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.0e-155 553.9 451 62.5
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 4.0e-155 552.0 442 64.0
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 8.8e-155 550.8 452 64.2
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 2.6e-154 549.3 446 63.0
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 3.3e-154 548.9 428 66.1
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 7.5e-154 547.7 447 61.7
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 9.7e-154 547.4 429 64.6
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.3e-153 547.0 429 64.6
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 1.1e-152 543.9 446 62.6
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 5.3e-152 541.6 431 64.3
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 7.0e-152 541.2 468 59.8
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 9.1e-152 540.8 451 61.2
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.7e-151 539.3 447 64.0
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 3.5e-151 538.9 460 61.7
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 2.2e-150 536.2 468 62.0
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 5.0e-150 535.0 458 62.4
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.9e-149 533.1 458 62.9
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 7.2e-149 531.2 428 64.7
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 1.6e-148 530.0 458 61.1
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 8.0e-148 527.7 445 63.1
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.0e-147 527.3 452 61.7
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 1.0e-147 527.3 454 61.5
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.0e-147 527.3 448 61.6
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 2.3e-147 526.2 427 63.5
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 4.0e-147 525.4 439 61.3
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 5.2e-147 525.0 438 61.9
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.5e-146 523.5 484 55.8
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 5.7e-146 521.5 431 61.9
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 9.8e-146 520.8 448 60.5
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 3.7e-145 518.8 459 60.6
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 2.9e-142 509.2 437 59.3
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 3.2e-141 505.8 358 69.3
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.2e-141 505.8 408 67.2
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.7e-140 502.7 442 58.8
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 3.0e-139 499.2 434 58.8
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 4.0e-139 498.8 441 58.3
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.0e-138 496.5 446 58.5
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 4.1e-136 488.8 362 68.8
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 5.4e-136 488.4 447 57.0
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 6.6e-134 481.5 412 59.2
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 5.7e-130 468.4 435 56.8
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.8e-124 449.5 403 56.6
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.4e-120 436.4 447 55.7
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 2.7e-119 433.0 398 59.8
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 2.8e-116 422.9 368 59.5
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 2.3e-115 419.9 408 52.9
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 5.2e-115 418.7 343 62.1
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 1.7e-113 413.7 349 59.9
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.6e-111 407.1 352 59.9
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.0e-110 404.4 439 50.6
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.0e-110 404.4 420 51.7
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.5e-106 390.6 432 50.7
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 2.0e-106 390.2 416 49.0
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 9.6e-101 371.3 311 62.4
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.6e-84 317.4 287 57.8
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 1.8e-75 287.3 245 63.7
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 3.8e-65 253.1 181 67.4
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 6.5e-65 252.3 172 69.2
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 4.2e-64 249.6 236 53.0
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.4e-59 234.6 190 63.7
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 9.1e-59 231.9 156 69.9
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 4.2e-56 223.0 290 45.2
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 1.8e-43 181.0 152 61.2
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 2.4e-43 180.6 139 62.6
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 1.4e-35 154.8 178 46.1
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 3.7e-28 130.2 126 50.0
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 1.7e-25 121.3 125 50.4
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 3.5e-18 97.1 59 76.3
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.1e-08 65.5 56 55.4


User provided reference genes

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