Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 6.3e-27 124.4 64 100.0
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.4e-26 123.2 64 98.4
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 6.5e-24 114.4 64 89.1
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 5.5e-23 111.3 64 89.1
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 2.7e-22 109.0 61 86.9
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 4.0e-21 105.1 61 83.6
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 8.8e-21 104.0 61 82.0
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 1.1e-20 103.6 64 78.1
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 2.0e-20 102.8 64 76.6
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 4.8e-19 98.2 63 76.2
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 8.2e-19 97.4 64 75.0
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.8e-18 96.3 64 73.4
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 3.1e-18 95.5 64 78.1
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 3.1e-18 95.5 62 77.4
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 4.1e-18 95.1 64 71.9
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 5.3e-18 94.7 64 70.3
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 9.1e-18 94.0 64 71.9
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 9.1e-18 94.0 62 72.6
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 9.1e-18 94.0 64 70.3
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 9.1e-18 94.0 64 70.3
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 1.6e-17 93.2 64 70.3
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 2.6e-17 92.4 62 69.4
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 2.6e-17 92.4 62 69.4
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 4.5e-17 91.7 62 69.4
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 4.5e-17 91.7 62 69.4
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 4.5e-17 91.7 62 69.4
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 4.5e-17 91.7 62 69.4
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 4.5e-17 91.7 62 69.4
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 7.7e-17 90.9 62 69.4
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 7.7e-17 90.9 61 73.8
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 7.7e-17 90.9 64 67.2
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 1.0e-16 90.5 62 69.4
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 1.0e-16 90.5 62 69.4
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 1.0e-16 90.5 62 67.7
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 1.0e-16 90.5 62 67.7
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 1.0e-16 90.5 62 69.4
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 1.0e-16 90.5 64 70.3
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.0e-16 90.5 64 70.3
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.0e-16 90.5 64 70.3
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 1.3e-16 90.1 61 75.4
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 1.7e-16 89.7 64 75.0
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 2.2e-16 89.4 61 72.1
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 2.2e-16 89.4 61 70.5
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 2.2e-16 89.4 62 67.7
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 2.2e-16 89.4 62 69.4
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 2.2e-16 89.4 62 67.7
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 2.2e-16 89.4 62 67.7
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 2.2e-16 89.4 61 68.9
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.2e-16 89.4 64 68.8
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.2e-16 89.4 64 68.8
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 2.2e-16 89.4 64 68.8
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 2.9e-16 89.0 61 70.5
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 3.8e-16 88.6 61 68.9
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 3.8e-16 88.6 61 68.9
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 3.8e-16 88.6 63 69.8
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 6.5e-16 87.8 61 73.8
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 6.5e-16 87.8 64 67.2
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 6.5e-16 87.8 61 72.1
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 1.1e-15 87.0 64 67.2
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 1.1e-15 87.0 64 67.2
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 1.1e-15 87.0 64 67.2
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.9e-15 86.3 61 72.1
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 1.9e-15 86.3 61 70.5
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 2.5e-15 85.9 62 69.4
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 2.5e-15 85.9 64 65.6
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 3.2e-15 85.5 64 67.2
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 4.2e-15 85.1 61 68.9
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 4.2e-15 85.1 61 68.9
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 4.2e-15 85.1 58 69.0
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 5.5e-15 84.7 54 77.8
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 5.5e-15 84.7 64 62.5
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 5.5e-15 84.7 55 72.7
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 7.2e-15 84.3 62 72.6
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 7.2e-15 84.3 62 72.6
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 7.2e-15 84.3 62 72.6
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 7.2e-15 84.3 62 72.6
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 7.2e-15 84.3 62 72.6
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 7.2e-15 84.3 58 67.2
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 7.2e-15 84.3 62 64.5
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 9.4e-15 84.0 62 67.7
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 9.4e-15 84.0 59 66.1
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 9.4e-15 84.0 64 65.6
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 9.4e-15 84.0 64 64.1
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 1.6e-14 83.2 61 62.3
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 1.6e-14 83.2 64 60.9
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 1.6e-14 83.2 62 71.0
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.6e-14 83.2 64 67.2
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.6e-14 83.2 64 67.2
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 2.7e-14 82.4 64 62.5
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 3.6e-14 82.0 65 70.8
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 8.0e-14 80.9 64 64.1
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 1.8e-13 79.7 62 64.5
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 1.8e-13 79.7 62 61.3
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 2.3e-13 79.3 64 62.5
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 2.3e-13 79.3 64 62.5
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 8.8e-13 77.4 65 60.0
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 1.5e-12 76.6 62 66.1
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 1.5e-12 76.6 62 66.1
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 2.0e-12 76.3 62 66.1
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 1.3e-11 73.6 64 57.8
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 3.7e-11 72.0 49 73.5
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 3.7e-11 72.0 49 73.5
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 3.7e-11 72.0 49 73.5
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 2.4e-10 69.3 49 69.4
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 2.4e-10 69.3 49 69.4
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 3.1e-10 68.9 49 69.4
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 4.1e-10 68.6 64 60.9
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 2.2e-08 62.8 59 47.5
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 5.0e-08 61.6 59 50.8
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.5e-07 60.1 53 50.9
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 5.5e-07 58.2 53 45.3
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.2e-06 57.0 54 40.7
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 2.1e-06 56.2 53 39.6
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 2.7e-06 55.8 53 43.4
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 3.6e-06 55.5 55 38.2
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 3.6e-06 55.5 54 42.6
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 3.6e-06 55.5 53 41.5
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 4.7e-06 55.1 54 48.1


User provided reference genes

Program Settings