Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003894g0050 Nicotiana tabacum HOM05D001444 ORTHO05D012314 1.2e-37 159.5 85 100.0
Solyc10g024320.2 Solanum lycopersicum HOM05D001444 ORTHO05D003766 3.8e-36 154.5 84 96.4
Sopen10g009280 Solanum pennellii HOM05D001444 ORTHO05D003766 3.8e-36 154.5 84 96.4
Duzib106G0804 Durio zibethinus HOM05D001444 ORTHO05D003766 8.4e-36 153.3 84 96.4
Duzib177G0746 Durio zibethinus HOM05D001444 ORTHO05D003766 8.4e-36 153.3 84 96.4
Gohir.A08G205900 Gossypium hirsutum HOM05D001444 ORTHO05D003766 8.4e-36 153.3 84 96.4
Gohir.A11G273200 Gossypium hirsutum HOM05D001444 ORTHO05D003766 8.4e-36 153.3 84 96.4
Gohir.D08G222800 Gossypium hirsutum HOM05D001444 ORTHO05D003766 8.4e-36 153.3 84 96.4
Gohir.D11G283300 Gossypium hirsutum HOM05D001444 ORTHO05D003766 8.4e-36 153.3 84 96.4
Gorai.004G236600 Gossypium raimondii HOM05D001444 ORTHO05D003766 8.4e-36 153.3 84 96.4
Gorai.007G306200 Gossypium raimondii HOM05D001444 ORTHO05D003766 8.4e-36 153.3 84 96.4
Thecc.05G322700 Theobroma cacao HOM05D001444 ORTHO05D003766 8.4e-36 153.3 84 96.4
GSVIVG01031236001 Vitis vinifera HOM05D001444 ORTHO05D003766 1.9e-35 152.1 84 95.2
CSS0031861 Camellia sinensis var. sinensis HOM05D001444 ORTHO05D003766 2.4e-35 151.8 84 95.2
COL.COLO4_05554 Corchorus olitorius HOM05D001444 ORTHO05D003766 2.4e-35 151.8 84 94.0
Oeu064819.1 Olea europaea HOM05D001444 ORTHO05D003766 3.2e-35 151.4 85 94.1
Oeu053708.1 Olea europaea HOM05D001444 ORTHO05D003766 4.2e-35 151.0 85 94.1
Psat0s3400g0080 Pisum sativum HOM05D001444 ORTHO05D003766 5.4e-35 150.6 84 95.2
Lj5A334G51 Lonicera japonica HOM05D001444 ORTHO05D003766 7.1e-35 150.2 84 94.0
Hma1.2p1_0008F-1.1_g005610 Hydrangea macrophylla HOM05D001444 ORTHO05D003766 9.3e-35 149.8 84 94.0
Actinidia01682 Actinidia chinensis HOM05D001444 ORTHO05D003766 1.2e-34 149.4 84 94.0
CiPaw.07G029500 Carya illinoinensis HOM05D001444 ORTHO05D003766 1.2e-34 149.4 84 94.0
PGR083G0370 Punica granatum HOM05D001444 ORTHO05D003766 1.2e-34 149.4 84 94.0
QL03p013621 Quercus lobata HOM05D001444 ORTHO05D003766 1.2e-34 149.4 84 94.0
QL03p039871 Quercus lobata HOM05D001444 ORTHO05D003766 1.2e-34 149.4 84 94.0
Sc06g0005760 Simmondsia chinensis HOM05D001444 ORTHO05D003766 1.2e-34 149.4 84 92.9
ATR0796G182 Amborella trichopoda HOM05D001444 ORTHO05D003766 1.6e-34 149.1 84 94.0
TPR.G2620 Trifolium pratense HOM05D001444 ORTHO05D003766 1.6e-34 149.1 84 94.0
Ca_10170_v3 Cicer arietinum L. HOM05D001444 ORTHO05D003766 2.1e-34 148.7 84 94.0
Glyma.10G147200 Glycine max HOM05D001444 ORTHO05D003766 2.1e-34 148.7 84 94.0
Glyma.20G097700 Glycine max HOM05D001444 ORTHO05D003766 2.1e-34 148.7 84 94.0
Phvul.007G201200 Phaseolus vulgaris HOM05D001444 ORTHO05D003766 2.1e-34 148.7 84 94.0
VMungo0720G2265 Vigna mungo HOM05D001444 ORTHO05D003766 2.1e-34 148.7 84 94.0
MSTRG.27942 Avicennia marina HOM05D001444 ORTHO05D003766 2.7e-34 148.3 84 92.9
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 2.7e-34 148.3 84 94.0
CDE11G0937 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 2.7e-34 148.3 84 94.0
Duzib128G0547 Durio zibethinus HOM05D001444 ORTHO05D003766 2.7e-34 148.3 84 92.9
SGA_v2.0_scaffold37G14611 Striga asiatica HOM05D001444 ORTHO05D003766 2.7e-34 148.3 84 92.9
TAR636G1039 Trochodendron aralioides HOM05D001444 ORTHO05D003766 2.7e-34 148.3 84 92.9
EL10Ac4g09446 Beta vulgaris HOM05D001444 ORTHO05D003766 3.5e-34 147.9 84 94.0
Potri.013G008900 Populus trichocarpa HOM05D001444 ORTHO05D003766 3.5e-34 147.9 84 91.7
Prupe.6G313300 Prunus persica HOM05D001444 ORTHO05D003766 3.5e-34 147.9 84 92.9
Rhsim05G0131900 Rhododendron simsii HOM05D001444 ORTHO05D003766 3.5e-34 147.9 84 91.7
Sabra13G0007500 Salix brachista HOM05D001444 ORTHO05D003766 3.5e-34 147.9 84 91.7
TWI56G1076 Tripterygium wilfordii HOM05D001444 ORTHO05D003766 3.5e-34 147.9 84 92.9
Ciclev10000120m.g Citrus clementina HOM05D001444 ORTHO05D003766 4.6e-34 147.5 84 92.9
DCAR_005419 Daucus carota HOM05D001444 ORTHO05D003766 4.6e-34 147.5 84 92.9
DCAR_017356 Daucus carota HOM05D001444 ORTHO05D003766 4.6e-34 147.5 84 92.9
Migut.N01380 Erythranthe guttata HOM05D001444 ORTHO05D003766 4.6e-34 147.5 84 92.9
Medtr1g084020 Medicago truncatula HOM05D001444 ORTHO05D003766 4.6e-34 147.5 84 92.9
Nn3g21688 Nelumbo nucifera HOM05D001444 ORTHO05D003766 4.6e-34 147.5 84 92.9
Nn4g25600 Nelumbo nucifera HOM05D001444 ORTHO05D003766 4.6e-34 147.5 84 92.9
Cpa.g.sc48.159 Carica papaya HOM05D001444 ORTHO05D003766 6.0e-34 147.1 84 94.0
TAR633G2402 Trochodendron aralioides HOM05D001444 ORTHO05D003766 6.0e-34 147.1 84 90.5
Cfa006700 Carpinus fangiana HOM05D001444 ORTHO05D003766 7.9e-34 146.7 84 92.9
Haze_04062 Corylus avellana HOM05D001444 ORTHO05D003766 7.9e-34 146.7 84 92.9
Lalb_Chr02g0147821 Lupinus albus HOM05D001444 ORTHO05D003766 7.9e-34 146.7 84 92.9
Lalb_Chr21g0310321 Lupinus albus HOM05D001444 ORTHO05D003766 7.9e-34 146.7 84 92.9
MD04G1193200 Malus domestica HOM05D001444 ORTHO05D003766 7.9e-34 146.7 84 91.7
Manes.08G111500 Manihot esculenta HOM05D001444 ORTHO05D003766 7.9e-34 146.7 84 91.7
Potri.005G017600 Populus trichocarpa HOM05D001444 ORTHO05D003766 7.9e-34 146.7 84 90.5
Prupe.2G038600 Prunus persica HOM05D001444 ORTHO05D003766 7.9e-34 146.7 84 91.7
arahy.Tifrunner.gnm1.ann1.06RU3W Arachis hypogaea HOM05D001444 ORTHO05D003766 1.0e-33 146.4 84 91.7
arahy.Tifrunner.gnm1.ann1.UJ98VB Arachis hypogaea HOM05D001444 ORTHO05D003766 1.0e-33 146.4 84 91.7
MD12G1206100 Malus domestica HOM05D001444 ORTHO05D003766 1.0e-33 146.4 84 91.7
ClCG00G002460 Citrullus lanatus HOM05D001444 ORTHO05D003766 1.3e-33 146.0 84 90.5
ClCG02G014960 Citrullus lanatus HOM05D001444 ORTHO05D003766 1.3e-33 146.0 84 90.5
CANSAT54G1984 Cannabis sativa HOM05D001444 ORTHO05D003766 1.8e-33 145.6 84 90.5
Gohir.D09G069933 Gossypium hirsutum HOM05D001444 ORTHO05D012314 3.0e-33 144.8 84 91.7
Gorai.006G084200 Gossypium raimondii HOM05D001444 ORTHO05D012314 3.0e-33 144.8 84 91.7
CsaV3_2G007040 Cucumis sativus L. HOM05D001444 ORTHO05D003766 5.1e-33 144.1 84 88.1
Dinv24440 Davidia involucrata HOM05D001444 ORTHO05D003766 5.1e-33 144.1 84 90.5
Eucgr.L00266 Eucalyptus grandis HOM05D001444 ORTHO05D003766 5.1e-33 144.1 84 90.5
FvH4_6g07420 Fragaria vesca HOM05D001444 ORTHO05D003766 5.1e-33 144.1 84 90.5
FAN02G3316 Fragaria x ananassa HOM05D001444 ORTHO05D003766 5.1e-33 144.1 84 90.5
FAN05G3889 Fragaria x ananassa HOM05D001444 ORTHO05D003766 5.1e-33 144.1 84 90.5
FAN09G2106 Fragaria x ananassa HOM05D001444 ORTHO05D003766 5.1e-33 144.1 84 90.5
FAN14G2853 Fragaria x ananassa HOM05D001444 ORTHO05D003766 5.1e-33 144.1 84 90.5
RcHm_v2.0_Chr3g0457021 Rosa chinensis HOM05D001444 ORTHO05D003766 5.1e-33 144.1 84 90.5
Zm00001eb331350 Zea mays HOM05D001444 ORTHO05D003766 5.1e-33 144.1 84 89.3
Dinv30892 Davidia involucrata HOM05D001444 ORTHO05D003766 1.1e-32 142.9 84 90.5
MD02G1284000 Malus domestica HOM05D001444 ORTHO05D003766 1.1e-32 142.9 84 90.5
Sed0006327 Sechium edule HOM05D001444 ORTHO05D003766 1.1e-32 142.9 84 88.1
Zm00001eb111810 Zea mays HOM05D001444 ORTHO05D003766 1.5e-32 142.5 84 88.1
MELO3C004189.2 Cucumis melo HOM05D001444 ORTHO05D003766 1.9e-32 142.1 84 88.1
Cc02_g35000 Coffea canephora HOM05D001444 ORTHO05D003766 4.3e-32 141.0 84 85.7
Aqoxy7G03321 Aquilegia oxysepala HOM05D001444 ORTHO05D003766 5.6e-32 140.6 84 88.1
HanXRQChr16g0513821 Helianthus annuus HOM05D001444 ORTHO05D003766 5.6e-32 140.6 84 88.1
AL6G38730 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 1.3e-31 139.4 84 88.1
Carub.0006s2452 Capsella rubella HOM05D001444 ORTHO05D003766 1.6e-31 139.0 84 88.1
AUR62000399 Chenopodium quinoa HOM05D001444 ORTHO05D003766 1.6e-31 139.0 84 89.3
AUR62006755 Chenopodium quinoa HOM05D001444 ORTHO05D003766 1.6e-31 139.0 84 89.3
AT5G26860 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 2.8e-31 138.3 84 86.9
BcaNung03668 Brassica carinata HOM05D001444 ORTHO05D003766 2.8e-31 138.3 84 86.9
BolC7t44666H Brassica oleracea HOM05D001444 ORTHO05D003766 2.8e-31 138.3 84 86.9
CARHR186670 Cardamine hirsuta HOM05D001444 ORTHO05D003766 2.8e-31 138.3 84 86.9
Sp2g21140 Schrenkiella parvula HOM05D001444 ORTHO05D003766 2.8e-31 138.3 84 86.9
THA.LOC104820100 Tarenaya hassleriana HOM05D001444 ORTHO05D003766 2.8e-31 138.3 84 86.9
BcaNung03919 Brassica carinata HOM05D001444 ORTHO05D003766 3.7e-31 137.9 84 86.9
Thhalv10003617m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 3.7e-31 137.9 84 85.7
Lsat_1_v5_gn_5_103920 Lactuca sativa HOM05D001444 ORTHO05D003766 3.7e-31 137.9 84 85.7
C07p41360 Brassica napus HOM05D001444 ORTHO05D003766 6.2e-31 137.1 84 86.9
A06p37080 Brassica napus HOM05D001444 ORTHO05D003766 8.1e-31 136.7 84 85.7
BraA06t26633Z Brassica rapa HOM05D001444 ORTHO05D003766 8.1e-31 136.7 84 85.7
TAR365G0568 Trochodendron aralioides HOM05D001444 ORTHO05D003766 1.4e-30 136.0 84 85.7
Aa31LG11G9790 Aethionema arabicum HOM05D001444 ORTHO05D003766 1.8e-30 135.6 83 86.7
HPP92_017244 Vanilla planifolia HOM05D001444 ORTHO05D003766 1.8e-30 135.6 83 85.5
HPP92_027566 Vanilla planifolia HOM05D001444 ORTHO05D003766 1.8e-30 135.6 83 85.5
BcaC03g17826 Brassica carinata HOM05D001444 ORTHO05D003766 4.0e-30 134.4 84 84.5
BcaC05g27912 Brassica carinata HOM05D001444 ORTHO05D003766 4.0e-30 134.4 84 84.5
A02p38980 Brassica napus HOM05D001444 ORTHO05D003766 4.0e-30 134.4 84 84.5
C02p58570 Brassica napus HOM05D001444 ORTHO05D003766 4.0e-30 134.4 84 84.5
BolC2t11917H Brassica oleracea HOM05D001444 ORTHO05D003766 4.0e-30 134.4 84 84.5
BraA02t08868Z Brassica rapa HOM05D001444 ORTHO05D003766 4.0e-30 134.4 84 84.5
Lj5g0020416 Lotus japonicus HOM05D001444 ORTHO05D003766 1.2e-29 132.9 84 84.5
Zm00001eb014570 Zea mays HOM05D001444 ORTHO05D003766 7.6e-29 130.2 84 82.1
C09p52300 Brassica napus HOM05D001444 ORTHO05D012314 9.9e-29 129.8 84 82.1
vmacro19754 Vaccinium macrocarpon HOM05D001444 ORTHO05D003766 2.4e-27 125.2 136 58.1
Gohir.D05G286400 Gossypium hirsutum HOM05D001444 ORTHO05D012314 3.2e-27 124.8 71 91.5
AL3G16530 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 4.2e-27 124.4 84 77.4
Thhalv10022093m.g Eutrema salsugineum HOM05D001444 ORTHO05D003766 5.5e-27 124.0 84 79.8
FAN10G3276 Fragaria x ananassa HOM05D001444 ORTHO05D003766 7.1e-27 123.6 84 77.4
AT3G05790 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 9.3e-27 123.2 84 76.2
PSO063G2884 Papaver somniferum HOM05D001444 ORTHO05D003766 9.3e-27 123.2 84 77.4
PSO782G1742 Papaver somniferum HOM05D001444 ORTHO05D003766 9.3e-27 123.2 84 77.4
Carub.0003s0515 Capsella rubella HOM05D001444 ORTHO05D003766 1.6e-26 122.5 83 78.3
FAN03G3407 Fragaria x ananassa HOM05D001444 ORTHO05D003766 1.6e-26 122.5 84 76.2
FvH4_7g03300 Fragaria vesca HOM05D001444 ORTHO05D003766 2.1e-26 122.1 84 76.2
FAN06G0007 Fragaria x ananassa HOM05D001444 ORTHO05D003766 2.1e-26 122.1 84 76.2
Gohir.D08G105000 Gossypium hirsutum HOM05D000282 ORTHO05D012314 6.0e-26 120.6 71 88.7
ECA234G1965 Erigeron canadensis HOM05D001444 ORTHO05D003766 1.8e-25 119.0 85 77.6
BraA01t04474Z Brassica rapa HOM05D001444 ORTHO05D003766 3.0e-25 118.2 84 72.6
SalBow2G0724 Salvia bowleyana HOM05D001444 ORTHO05D003766 1.1e-24 116.3 153 50.3
AagrBONN_evm.TU.Sc2ySwM_228.1077 Anthoceros agrestis HOM05D001444 ORTHO05D003766 2.1e-23 112.1 84 70.2
BolC1t05667H Brassica oleracea HOM05D001444 ORTHO05D003766 3.7e-23 111.3 81 71.6
Peaxi162Scf01208g00006 Petunia axillaris HOM05D001444 ORTHO05D012314 1.8e-22 109.0 56 98.2
Mapoly0002s0303 Marchantia polymorpha HOM05D001444 ORTHO05D003766 4.0e-22 107.8 84 66.7
CAN.G167.15 Capsicum annuum HOM05D001444 ORTHO05D003766 5.3e-22 107.5 56 96.4
RcHm_v2.0_Chr1g0325611 Rosa chinensis HOM05D001444 ORTHO05D003766 5.3e-22 107.5 84 67.9
Ah.03g134540 Amaranthus hybridus HOM05D001444 ORTHO05D003766 7.6e-21 103.6 56 96.4
Gorai.007G272600 Gossypium raimondii HOM05D000282 ORTHO05D012314 1.3e-20 102.8 62 88.7
Pp3c13_13900 Physcomitrium patens HOM05D001444 ORTHO05D003766 1.7e-20 102.4 84 61.9
Gohir.D06G054700 Gossypium hirsutum HOM05D001444 ORTHO05D012314 8.4e-20 100.1 55 92.7
SHI18059 Sapria himalayana HOM05D001444 ORTHO05D003766 1.1e-19 99.8 55 92.7
unitig_26.g9563 Utricularia gibba HOM05D001444 ORTHO05D003766 1.1e-19 99.8 56 89.3
AL881U10010 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 2.5e-19 98.6 75 72.0
Gohir.D03G117533 Gossypium hirsutum HOM05D001444 ORTHO05D012314 4.2e-19 97.8 55 90.9
CBR_g37235 Chara braunii HOM05D001444 ORTHO05D003766 1.2e-18 96.3 84 57.1
MD07G1050000 Malus domestica HOM05D001444 ORTHO05D003766 1.0e-17 93.2 80 70.0
SMO358G0399 Selaginella moellendorffii HOM05D001444 ORTHO05D003766 2.3e-17 92.0 79 62.0
Actinidia01509 Actinidia chinensis HOM05D001444 ORTHO05D003766 9.7e-16 86.7 51 94.1
C05p39200 Brassica napus HOM05D001444 ORTHO05D014980 9.7e-16 86.7 52 90.4
BolC5t32653H Brassica oleracea HOM05D001444 ORTHO05D014980 9.7e-16 86.7 52 90.4
Atru.chr2.183 Acer truncatum HOM05D001444 ORTHO05D003766 1.6e-15 85.9 52 90.4
Gohir.D11G253600 Gossypium hirsutum HOM05D000282 ORTHO05D012314 6.3e-15 84.0 45 95.6
BcaC04g21082 Brassica carinata HOM05D001444 ORTHO05D014980 2.4e-14 82.0 52 86.5
C09p52310 Brassica napus HOM05D001444 ORTHO05D014980 1.2e-13 79.7 52 82.7
AL3G16520 Arabidopsis lyrata HOM05D001444 ORTHO05D003766 1.5e-13 79.3 56 75.0
AT3G05780 Arabidopsis thaliana HOM05D001444 ORTHO05D003766 1.5e-13 79.3 56 73.2
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 2.6e-13 78.6 54 72.2
MCO16G463 Micromonas commoda HOM05D001444 ORTHO05D003766 2.6e-13 78.6 77 54.5
Nitab4.5_0000155g0080 Nicotiana tabacum HOM05D001444 ORTHO05D014980 4.5e-13 77.8 44 97.7
VMungo0251G2141 Vigna mungo HOM05D001444 ORTHO05D012314 4.5e-13 77.8 66 71.2
BcaB07g33548 Brassica carinata HOM05D001444 ORTHO05D003766 2.2e-12 75.5 53 75.5
QL03p039928 Quercus lobata HOM05D001444 ORTHO05D003766 2.2e-12 75.5 98 46.9
BcaC09g47850 Brassica carinata HOM05D001444 ORTHO05D003766 5.0e-12 74.3 84 52.4
QL03p013575 Quercus lobata HOM05D001444 ORTHO05D003766 6.5e-12 73.9 98 45.9
C06p06270 Brassica napus HOM05D001444 ORTHO05D003766 8.5e-12 73.6 82 53.7
QL03p013604 Quercus lobata HOM05D001444 ORTHO05D003766 1.9e-11 72.4 55 69.1
Atru.chr2.221 Acer truncatum HOM05D001444 ORTHO05D003766 2.5e-11 72.0 51 80.4
BolC6t35734H Brassica oleracea HOM05D001444 ORTHO05D003766 4.2e-11 71.2 62 64.5
VMungo0331G1487 Vigna mungo HOM05D000002 ORTHO05D019055 2.1e-10 68.9 37 86.5
A06p02720 Brassica napus HOM05D001444 ORTHO05D003766 1.8e-09 65.9 53 66.0
Glyma.06G236800 Glycine max HOM05D001444 ORTHO05D003766 3.9e-09 64.7 36 97.2
Cre06.g281350 Chlamydomonas reinhardtii HOM05D001444 ORTHO05D003766 8.8e-09 63.5 77 49.4
Haze_26118 Corylus avellana HOM05D001444 ORTHO05D003766 9.7e-08 60.1 79 45.6
Cfa024900 Carpinus fangiana HOM05D001444 ORTHO05D003766 1.7e-07 59.3 76 43.4
A06p02730 Brassica napus HOM05D001444 ORTHO05D003766 2.2e-07 58.9 52 59.6
AL5G41580 Arabidopsis lyrata HOM05D001444 ORTHO05D012314 4.8e-07 57.8 36 86.1
Lsat_1_v5_gn_1_118981 Lactuca sativa HOM05D001444 ORTHO05D012314 1.4e-06 56.2 34 76.5
Lsat_1_v5_gn_4_97981 Lactuca sativa HOM05D000516 ORTHO05D000409 1.4e-06 56.2 34 76.5
Lsat_1_v5_gn_1_96040 Lactuca sativa HOM05D029873 ORTHO05D012314 4.1e-06 54.7 33 75.8


User provided reference genes

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