Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.5e-184 649.4 331 100.0
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.7e-169 599.4 331 93.1
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 1.0e-145 520.4 329 80.9
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 1.7e-145 519.6 329 80.2
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 5.1e-145 518.1 331 81.0
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 1.4e-142 510.0 328 81.1
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.6e-114 416.8 336 64.3
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 2.7e-114 416.0 333 64.0
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 7.4e-112 407.9 330 63.9
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 1.6e-111 406.8 332 63.9
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 2.1e-111 406.4 329 63.8
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 1.4e-110 403.7 333 62.5
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 1.5e-109 400.2 339 62.2
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 4.5e-109 398.7 338 61.8
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 4.5e-109 398.7 329 64.1
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 1.9e-107 393.3 308 64.6
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 4.6e-106 388.7 336 61.3
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 1.0e-105 387.5 326 60.4
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 1.0e-105 387.5 333 62.5
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 3.0e-105 386.0 327 59.6
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.1e-104 384.0 335 60.0
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 5.7e-104 381.7 341 58.9
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 5.7e-104 381.7 341 58.9
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 4.8e-103 378.6 254 78.7
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 6.3e-103 378.3 330 60.3
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 8.2e-103 377.9 332 59.3
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 8.2e-103 377.9 336 59.5
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.1e-102 377.5 332 59.0
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 1.1e-102 377.5 322 62.1
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 3.1e-102 375.9 337 61.7
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 5.3e-102 375.2 337 59.3
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 1.2e-101 374.0 337 57.9
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 7.6e-101 371.3 332 58.7
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 1.1e-99 367.5 333 59.5
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 1.4e-99 367.1 333 57.1
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 1.9e-99 366.7 333 57.7
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 2.5e-99 366.3 333 59.5
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 2.5e-99 366.3 335 57.0
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 2.5e-99 366.3 298 62.8
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 3.2e-99 365.9 291 62.5
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 5.5e-99 365.2 296 60.8
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 7.2e-99 364.8 336 59.8
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 4.6e-98 362.1 336 58.3
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.3e-95 354.0 336 56.5
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 6.9e-94 348.2 264 66.3
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.5e-93 347.1 325 58.2
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 2.0e-93 346.7 320 59.1
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 2.2e-92 343.2 335 56.7
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 2.9e-92 342.8 350 51.1
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 1.9e-91 340.1 333 55.9
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 2.5e-91 339.7 330 53.3
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 3.0e-89 332.8 329 55.6
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 8.8e-89 331.3 334 55.1
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 8.8e-89 331.3 336 56.2
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.3e-88 329.3 334 54.8
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 1.3e-87 327.4 334 54.8
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 1.7e-87 327.0 321 53.6
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 2.4e-86 323.2 334 53.6
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 6.9e-86 321.6 329 54.1
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 6.9e-86 321.6 330 51.2
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.0e-85 320.1 330 50.9
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 2.9e-84 316.2 330 52.1
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 3.8e-84 315.8 338 52.1
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 8.5e-84 314.7 328 54.6
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 2.5e-83 313.2 333 52.0
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.2e-83 312.8 293 54.6
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 7.2e-83 311.6 339 51.6
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 9.4e-83 311.2 260 67.3
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 2.7e-82 309.7 331 50.2
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 1.0e-81 307.8 295 56.6
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 1.8e-81 307.0 329 49.8
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 2.3e-81 306.6 298 56.4
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.8e-81 304.7 296 53.4
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 8.8e-81 304.7 334 51.8
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.5e-80 303.9 331 52.3
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.0e-80 303.5 298 57.4
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 2.6e-80 303.1 331 49.2
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 4.4e-80 302.4 321 50.8
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.3e-79 300.8 329 52.9
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 2.8e-79 299.7 334 50.6
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 6.3e-79 298.5 333 49.8
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 1.4e-78 297.4 335 49.3
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 7.0e-78 295.0 336 50.0
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 2.0e-77 293.5 297 51.2
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 5.9e-77 292.0 332 48.8
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 2.9e-76 289.7 336 47.3
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 2.9e-76 289.7 320 50.6
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 1.5e-75 287.3 331 47.4
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 1.9e-75 287.0 334 48.8
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.2e-75 285.0 329 49.2
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.6e-74 283.9 296 51.7
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.1e-74 283.5 332 49.4
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.6e-74 282.7 299 51.8
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 6.1e-74 282.0 329 47.4
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 6.1e-74 282.0 329 47.4
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 1.8e-73 280.4 331 47.7
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 2.3e-73 280.0 324 47.5
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 1.5e-72 277.3 340 48.8
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.6e-72 276.6 338 48.2
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 4.4e-72 275.8 336 47.6
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 4.4e-72 275.8 262 54.2
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 9.7e-72 274.6 346 45.4
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 1.7e-71 273.9 288 49.7
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 8.2e-71 271.6 328 48.8
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.9e-68 263.1 330 45.2
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.9e-68 263.1 330 45.2
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 5.0e-68 262.3 332 46.1
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.0e-68 262.3 326 48.2
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 6.5e-68 261.9 331 45.3
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 6.5e-68 261.9 332 47.3
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 9.4e-67 258.1 327 45.0
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 1.2e-66 257.7 242 57.0
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 9.8e-64 248.1 218 61.5
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 9.8e-64 248.1 328 44.5
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.8e-63 246.5 331 44.4
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.1e-62 242.7 288 48.6
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 2.0e-61 240.4 265 53.6
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 4.5e-61 239.2 336 42.6
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.9e-60 236.5 264 51.5
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.6e-58 230.7 328 43.3
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.6e-58 229.6 334 43.7
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 3.6e-58 229.6 334 43.7
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.0e-52 211.5 323 44.0
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.8e-52 209.5 336 42.0
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.6e-52 208.4 329 39.5
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 2.1e-50 203.8 215 54.4
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 2.3e-49 200.3 311 38.9
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.5e-48 195.3 237 46.4
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 1.1e-46 191.4 329 37.1
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.4e-46 191.0 192 54.7
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.9e-44 183.0 130 69.2
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.1e-43 181.4 158 62.0
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.2e-41 172.6 153 60.8
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 1.2e-40 171.4 183 53.0
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-40 171.4 150 58.0
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 4.4e-40 169.5 166 55.4
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 5.4e-38 162.5 180 53.9
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.3e-36 157.1 166 51.8
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 5.6e-35 152.5 149 49.0
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 2.6e-32 143.7 78 89.7
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 1.1e-30 138.3 99 69.7
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 2.5e-27 127.1 127 51.2
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 4.7e-26 122.9 87 71.3
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.3e-25 120.6 175 45.7
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 1.0e-20 105.1 106 47.2
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 3.3e-19 100.1 71 71.8
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.1e-17 95.1 74 63.5
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.5e-16 91.3 123 44.7
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 4.2e-14 83.2 122 41.0
Nitab4.5_0007441g0040 Nicotiana tabacum HOM05D004871 ORTHO05D005755 2.1e-13 80.9 44 86.4
VMungo0331G0655 Vigna mungo HOM05D001219 ORTHO05D001017 6.0e-13 79.3 257 27.6
Ah.08g209960 Amaranthus hybridus HOM05D002125 ORTHO05D002105 1.6e-10 71.2 262 23.7
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 4.8e-10 69.7 278 23.4
Actinidia29062 Actinidia chinensis HOM05D002125 ORTHO05D002105 4.0e-09 66.6 314 22.0
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 4.0e-09 66.6 56 62.5
ECA246G0900 Erigeron canadensis HOM05D000003 ORTHO05D000004 9.0e-09 65.5 55 50.9
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 2.0e-08 64.3 261 21.1
Psat7g041280 Pisum sativum HOM05D001219 ORTHO05D001017 2.6e-08 63.9 332 22.9
MD12G1181200 Malus domestica HOM05D002125 ORTHO05D002105 3.4e-08 63.5 315 23.5
Manes.03G053200 Manihot esculenta HOM05D003317 ORTHO05D003696 3.4e-08 63.5 267 26.2
Ah.09g231590 Amaranthus hybridus HOM05D003317 ORTHO05D003696 1.3e-07 61.6 330 23.3
Cfa002995 Carpinus fangiana HOM05D003317 ORTHO05D003696 1.3e-07 61.6 251 23.9
Lj3g0020556 Lotus japonicus HOM05D001219 ORTHO05D001017 1.3e-07 61.6 304 26.0
Psat7g261480 Pisum sativum HOM05D001219 ORTHO05D001017 1.3e-07 61.6 332 22.6
CARHR191640 Cardamine hirsuta HOM05D003317 ORTHO05D003696 2.9e-07 60.5 176 24.4
TPR.G9461 Trifolium pratense HOM05D003317 ORTHO05D003696 2.9e-07 60.5 283 25.8
TPR.G9692 Trifolium pratense HOM05D001219 ORTHO05D001017 2.9e-07 60.5 292 26.7
BcaNung04741 Brassica carinata HOM05D002125 ORTHO05D002105 3.8e-07 60.1 311 23.8
Medtr4g019320 Medicago truncatula HOM05D001219 ORTHO05D001017 3.8e-07 60.1 256 23.4
Medtr4g125440 Medicago truncatula HOM05D003317 ORTHO05D003696 4.9e-07 59.7 155 29.0
Medtr4g125410 Medicago truncatula HOM05D003317 ORTHO05D003696 6.4e-07 59.3 148 28.4
Psat4g030640 Pisum sativum HOM05D003317 ORTHO05D003696 6.4e-07 59.3 233 24.9
EL10Ac7g16789 Beta vulgaris HOM05D002125 ORTHO05D002105 1.1e-06 58.5 290 22.1
Hma1.2p1_0135F.1_g061780 Hydrangea macrophylla HOM05D001219 ORTHO05D001017 1.1e-06 58.5 276 23.9
CsaV3_1G040990 Cucumis sativus L. HOM05D003317 ORTHO05D003696 1.9e-06 57.8 162 30.2
Sopen00g008950 Solanum pennellii HOM05D003317 ORTHO05D003696 2.4e-06 57.4 163 27.6
Sopen07g021250 Solanum pennellii HOM05D003317 ORTHO05D003696 2.4e-06 57.4 163 27.6
TPR.G15122 Trifolium pratense HOM05D001219 ORTHO05D001017 3.2e-06 57.0 262 26.0
MELO3C015517.2 Cucumis melo HOM05D003317 ORTHO05D003696 4.2e-06 56.6 162 30.9
Glyma.13G110100 Glycine max HOM05D003317 ORTHO05D003696 5.4e-06 56.2 231 27.7
RcHm_v2.0_Chr2g0157391 Rosa chinensis HOM05D002813 ORTHO05D003203 7.1e-06 55.8 286 24.1
PGSC0003DMG400013008 Solanum tuberosum HOM05D003317 ORTHO05D003696 7.1e-06 55.8 163 27.0
Aa31LG11G9690 Aethionema arabicum HOM05D002125 ORTHO05D002105 9.3e-06 55.5 147 32.0
Cc06_g12060 Coffea canephora HOM05D003317 ORTHO05D003696 9.3e-06 55.5 290 23.4
Thecc.09G063600 Theobroma cacao HOM05D003317 ORTHO05D003696 9.3e-06 55.5 241 22.4


User provided reference genes

Program Settings