Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 0.0e+00 2063.9 1076 100.0
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 0.0e+00 1862.8 1150 87.6
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1714.1 1179 77.9
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 0.0e+00 1659.4 1174 77.2
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 0.0e+00 1584.3 935 87.0
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 0.0e+00 1489.6 895 85.8
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1125.9 1195 55.6
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1117.8 1131 56.3
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 0.0e+00 1117.4 1130 56.7
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1098.6 1187 54.3
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 5.8e-307 1057.7 1248 50.8
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 1.3e-303 1046.6 1175 52.6
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.9e-302 1042.7 1152 53.6
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 4.3e-302 1041.6 1153 53.6
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 9.5e-302 1040.4 1132 53.9
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 2.1e-301 1039.3 1148 54.3
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 1.5e-294 1016.5 1074 56.1
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 1.8e-292 1009.6 1195 51.8
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 4.9e-290 1001.5 1179 52.8
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.3e-287 992.6 1134 53.8
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 1.6e-285 986.5 1189 51.3
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.1e-284 983.8 1184 51.8
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.2e-283 980.3 1221 51.0
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 1.5e-283 979.9 1216 53.2
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 2.2e-282 976.1 1166 52.1
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 7.1e-281 971.1 1230 50.3
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 8.7e-279 964.1 1018 56.8
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 1.5e-278 963.4 1190 51.2
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 4.8e-277 958.4 1205 49.0
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 2.4e-276 956.1 1175 49.4
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 2.4e-276 956.1 1169 49.7
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 3.1e-276 955.7 1041 54.2
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 2.0e-275 953.0 1185 50.1
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 2.6e-275 952.6 1187 50.8
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 1.1e-270 937.2 1097 52.0
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 5.3e-268 928.3 980 55.1
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.4e-267 925.6 796 64.7
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 3.4e-267 925.6 1189 48.5
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 9.9e-267 924.1 1189 47.7
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 1.3e-266 923.7 1194 48.2
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 3.8e-266 922.2 1173 49.0
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 1.0e-263 914.1 976 54.6
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 3.9e-263 912.1 1178 48.7
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 6.7e-263 911.4 1154 50.5
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 1.5e-262 910.2 1031 53.7
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 5.6e-262 908.3 1154 50.8
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 2.8e-261 906.0 1218 47.3
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.8e-260 903.3 1154 50.7
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 4.0e-260 902.1 1156 51.2
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 2.0e-259 899.8 957 54.8
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 2.0e-259 899.8 1159 48.5
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 4.5e-259 898.7 1239 46.1
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 7.6e-259 897.9 1161 48.4
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 7.6e-259 897.9 1188 47.9
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 1.1e-257 894.0 1144 48.3
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 1.1e-257 894.0 1184 47.2
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 6.0e-256 888.3 1179 46.4
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 1.8e-255 886.7 1150 47.4
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 1.1e-254 884.0 1178 46.1
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 7.4e-254 881.3 1243 46.0
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 1.8e-252 876.7 1179 46.1
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 4.1e-252 875.5 1164 47.1
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 5.9e-251 871.7 1179 47.8
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 1.0e-250 870.9 1156 47.1
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 1.6e-248 863.6 1166 46.8
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.1e-246 857.4 1217 46.6
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 4.3e-246 855.5 1181 47.8
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 8.2e-245 851.3 1163 47.0
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 1.1e-244 850.9 1117 49.8
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 4.5e-243 845.5 1060 49.2
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 5.9e-243 845.1 1160 46.4
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 1.0e-242 844.3 1165 46.3
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 1.3e-242 844.0 1124 47.7
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 1.3e-237 827.4 913 52.8
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 2.8e-237 826.2 1177 45.2
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 2.6e-235 819.7 1065 48.2
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 1.0e-234 817.8 1167 46.0
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 4.2e-233 812.4 1146 46.2
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 5.2e-231 805.4 1197 44.3
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 1.1e-230 804.3 1180 44.6
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 3.8e-226 789.3 1145 44.9
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 6.5e-226 788.5 1151 44.0
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 5.5e-225 785.4 1165 43.8
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 1.2e-224 784.3 1158 44.4
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 1.4e-223 780.8 1146 44.8
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 4.0e-223 779.2 1167 43.2
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 1.2e-222 777.7 1158 44.7
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.2e-216 757.7 1114 44.8
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 1.7e-213 747.3 1135 43.1
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 2.8e-213 746.5 1149 43.4
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 8.3e-213 745.0 1155 44.5
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 1.1e-212 744.6 1135 43.0
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 1.4e-212 744.2 1146 42.9
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 7.7e-211 738.4 1020 47.7
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.0e-210 738.0 1148 43.4
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 1.0e-210 738.0 1144 43.0
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 4.2e-209 732.6 1116 45.3
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 9.5e-209 731.5 1147 45.2
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.0e-207 728.0 794 54.0
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 2.3e-207 726.9 1022 46.2
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 5.2e-207 725.7 787 55.0
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.4e-206 723.0 925 47.9
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 4.9e-205 719.2 1027 45.3
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 1.8e-204 717.2 1142 44.2
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 2.7e-203 713.4 1153 42.2
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 3.8e-202 709.5 1150 42.5
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 3.8e-202 709.5 1150 42.5
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 8.6e-202 708.4 1150 42.6
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 1.5e-201 707.6 1150 42.1
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 2.9e-197 693.3 1156 40.9
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 9.5e-185 651.7 882 47.2
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 4.0e-183 646.4 1058 42.3
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 1.0e-178 631.7 998 42.9
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 1.8e-175 620.9 1072 41.4
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 8.7e-170 602.1 1149 38.6
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 1.1e-159 568.5 1022 40.1
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 6.9e-159 565.8 1136 36.5
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.8e-151 541.2 547 55.4
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 6.0e-139 499.6 987 37.4
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 4.8e-136 490.0 905 40.0
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 8.8e-130 469.2 1066 34.4
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 2.2e-125 454.5 1061 35.3
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.8e-120 437.6 1123 35.6
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 4.8e-120 436.8 1077 34.7
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 4.7e-115 420.2 1162 32.4
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 4.5e-102 377.1 315 63.2
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 2.7e-99 367.9 1087 32.2
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 4.5e-94 350.5 1014 32.9
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 9.5e-92 342.8 431 46.6
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 1.1e-84 319.3 682 39.4
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 9.8e-73 279.6 558 37.5
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 3.5e-70 271.2 354 46.6
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 7.8e-70 270.0 876 30.6
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 3.6e-67 261.2 1055 28.6
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 8.1e-67 260.0 872 29.0
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.8e-66 258.8 1091 27.8
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 5.8e-65 253.8 917 30.4
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 1.2e-62 246.1 450 42.7
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 3.5e-62 244.6 942 28.2
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 2.3e-61 241.9 861 29.7
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.2e-57 229.6 203 59.1
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 1.9e-55 222.2 850 26.9
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 7.1e-55 220.3 540 34.4
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 7.8e-54 216.9 908 28.2
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 1.7e-53 215.7 1092 26.3
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 2.5e-52 211.8 615 29.4
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 2.8e-51 208.4 885 27.9
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 6.2e-51 207.2 214 53.7
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 5.3e-50 204.1 220 50.9
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 2.6e-49 201.8 1131 25.2
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 6.4e-48 197.2 329 40.1
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 9.6e-44 183.3 489 32.9
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 3.4e-41 174.9 688 27.8
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 3.2e-39 168.3 265 40.0
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 9.3e-39 166.8 1060 24.9
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.7e-38 165.2 756 26.6
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 7.9e-38 163.7 166 51.8
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 2.5e-36 158.7 971 23.6
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 3.7e-35 154.8 1006 24.1
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 1.4e-34 152.9 858 26.5
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 1.3e-27 129.8 164 48.8
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.8e-27 127.9 370 34.3
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 8.2e-27 127.1 193 33.7
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 5.0e-24 117.9 84 63.1
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 1.5e-20 106.3 188 31.4
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 3.3e-20 105.1 176 36.9
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 1.8e-18 99.4 134 47.8
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 1.5e-17 96.3 132 43.9
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 3.8e-16 91.7 90 48.9
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 5.0e-16 91.3 146 41.8
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 8.5e-16 90.5 88 45.5
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 1.4e-15 89.7 466 26.2
Nitab4.5_0004322g0030 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.8e-11 75.5 58 63.8
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 4.1e-10 71.6 86 43.0
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.5e-09 68.2 139 33.1
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 5.0e-08 64.7 62 51.6
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 3.6e-06 58.5 74 52.7
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 4.7e-06 58.2 52 44.2


User provided reference genes

Program Settings