Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002458g0050 Nicotiana tabacum HOM05D001425 ORTHO05D001272 8.0e-59 230.3 125 100.0
Nitab4.5_0005428g0040 Nicotiana tabacum HOM05D001425 ORTHO05D001272 2.7e-46 188.7 114 92.1
Peaxi162Scf00405g00117 Petunia axillaris HOM05D001425 ORTHO05D001272 1.7e-40 169.5 119 78.2
Solyc03g006040.3 Solanum lycopersicum HOM05D001425 ORTHO05D001272 1.4e-39 166.4 115 79.1
Sopen03g002050 Solanum pennellii HOM05D001425 ORTHO05D001272 2.4e-39 165.6 115 79.1
CAN.G866.32 Capsicum annuum HOM05D001425 ORTHO05D001272 2.7e-38 162.2 115 74.8
PGSC0003DMG400026751 Solanum tuberosum HOM05D001425 ORTHO05D001272 2.6e-33 145.6 101 79.2
Cc02_g15540 Coffea canephora HOM05D001425 ORTHO05D001272 1.8e-31 139.4 115 64.3
Oeu041734.1 Olea europaea HOM05D001425 ORTHO05D001272 4.1e-31 138.3 114 62.3
GSVIVG01021251001 Vitis vinifera HOM05D001425 ORTHO05D001272 4.1e-31 138.3 123 62.6
Oeu060166.1 Olea europaea HOM05D001425 ORTHO05D001272 2.0e-30 136.0 108 63.9
CSS0039671 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.8e-29 131.7 114 62.3
Dinv12758 Davidia involucrata HOM05D001425 ORTHO05D001272 1.5e-28 129.8 114 60.5
MSTRG.13230 Avicennia marina HOM05D001425 ORTHO05D001272 1.2e-27 126.7 113 61.9
MSTRG.16167 Avicennia marina HOM05D001425 ORTHO05D001272 1.2e-27 126.7 113 62.8
Dinv32343 Davidia involucrata HOM05D001425 ORTHO05D001272 1.2e-27 126.7 113 60.2
SalBow7G3660 Salvia bowleyana HOM05D001425 ORTHO05D001272 2.8e-27 125.6 114 58.8
Oeu039884.1 Olea europaea HOM05D001425 ORTHO05D001272 3.6e-27 125.2 107 59.8
SGA_v2.0_scaffold1G00076 Striga asiatica HOM05D001425 ORTHO05D001272 3.0e-26 122.1 117 56.4
MSTRG.7426 Avicennia marina HOM05D001425 ORTHO05D001272 6.8e-26 120.9 114 57.9
TAR629G2569 Trochodendron aralioides HOM05D001425 ORTHO05D001272 2.4e-23 112.5 117 58.1
Actinidia35598 Actinidia chinensis HOM05D001425 ORTHO05D001272 4.1e-23 111.7 112 54.5
Migut.H01417 Erythranthe guttata HOM05D001425 ORTHO05D001272 2.7e-22 109.0 121 53.7
Nn1g04511 Nelumbo nucifera HOM05D001425 ORTHO05D001272 1.0e-21 107.1 127 54.3
TAR626G1246 Trochodendron aralioides HOM05D001425 ORTHO05D001272 5.0e-21 104.8 117 54.7
Nn3g21110 Nelumbo nucifera HOM05D001425 ORTHO05D001272 8.6e-21 104.0 127 52.8
Atru.chr10.1575 Acer truncatum HOM05D001425 ORTHO05D001272 1.1e-20 103.6 135 51.9
Actinidia16777 Actinidia chinensis HOM05D001425 ORTHO05D001272 1.5e-20 103.2 112 53.6
Thecc.06G166200 Theobroma cacao HOM05D001425 ORTHO05D001272 1.5e-20 103.2 128 51.6
Migut.L00714 Erythranthe guttata HOM05D001425 ORTHO05D001272 1.6e-19 99.8 95 55.8
MD10G1275900 Malus domestica HOM05D001425 ORTHO05D001272 2.1e-19 99.4 125 50.4
Duzib235G0112 Durio zibethinus HOM05D001425 ORTHO05D001272 6.2e-19 97.8 128 48.4
Gohir.D05G156400 Gossypium hirsutum HOM05D001425 ORTHO05D001272 6.2e-19 97.8 128 49.2
Gorai.009G160900 Gossypium raimondii HOM05D001425 ORTHO05D001272 6.2e-19 97.8 129 48.8
Gohir.A05G153700 Gossypium hirsutum HOM05D001425 ORTHO05D001272 8.0e-19 97.4 128 48.4
COL.COLO4_31243 Corchorus olitorius HOM05D001425 ORTHO05D001272 1.1e-18 97.1 129 49.6
Gohir.D06G138400 Gossypium hirsutum HOM05D001425 ORTHO05D001272 1.4e-18 96.7 128 48.4
Gohir.A10G035000 Gossypium hirsutum HOM05D001425 ORTHO05D001272 1.8e-18 96.3 119 48.7
Gohir.A06G132900 Gossypium hirsutum HOM05D001425 ORTHO05D001272 2.3e-18 95.9 128 48.4
Gorai.010G160900 Gossypium raimondii HOM05D001425 ORTHO05D001272 2.3e-18 95.9 128 48.4
Gohir.D10G035700 Gossypium hirsutum HOM05D001425 ORTHO05D001272 3.1e-18 95.5 119 47.9
Gorai.011G037600 Gossypium raimondii HOM05D001425 ORTHO05D001272 3.1e-18 95.5 122 47.5
Ciclev10016999m.g Citrus clementina HOM05D001425 ORTHO05D001272 5.2e-18 94.7 129 48.8
Hma1.2p1_0829F.1_g225230 Hydrangea macrophylla HOM05D001425 ORTHO05D001272 6.8e-18 94.4 83 61.4
TWI09G0354 Tripterygium wilfordii HOM05D001425 ORTHO05D001272 8.9e-18 94.0 126 48.4
Lalb_Chr07g0186331 Lupinus albus HOM05D001425 ORTHO05D001272 2.0e-17 92.8 126 49.2
Duzib160G0077 Durio zibethinus HOM05D001425 ORTHO05D001272 3.4e-17 92.0 130 48.5
Potri.004G060800 Populus trichocarpa HOM05D001425 ORTHO05D001272 5.8e-17 91.3 130 47.7
DCAR_005135 Daucus carota HOM05D001425 ORTHO05D001272 9.8e-17 90.5 116 48.3
Prupe.4G066300 Prunus persica HOM05D001425 ORTHO05D001272 1.3e-16 90.1 129 46.5
QL05p049746 Quercus lobata HOM05D001425 ORTHO05D001272 1.7e-16 89.7 124 48.4
VMungo0251G3022 Vigna mungo HOM05D001425 ORTHO05D001272 1.7e-16 89.7 126 46.0
Glyma.05G160700 Glycine max HOM05D001425 ORTHO05D001272 3.7e-16 88.6 126 44.4
Phvul.002G240800 Phaseolus vulgaris HOM05D001425 ORTHO05D001272 3.7e-16 88.6 137 45.3
TPR.G6742 Trifolium pratense HOM05D001425 ORTHO05D001272 4.9e-16 88.2 126 48.4
MD05G1295800 Malus domestica HOM05D001425 ORTHO05D001272 6.4e-16 87.8 125 48.8
PSO782G3214 Papaver somniferum HOM05D001425 ORTHO05D001272 6.4e-16 87.8 122 46.7
Psat0s2741g0080 Pisum sativum HOM05D001425 ORTHO05D001272 8.3e-16 87.4 128 41.4
FAN11G3009 Fragaria x ananassa HOM05D001425 ORTHO05D001272 1.1e-15 87.0 137 43.8
Lalb_Chr12g0204971 Lupinus albus HOM05D001425 ORTHO05D001272 1.1e-15 87.0 124 46.0
FvH4_3g07370 Fragaria vesca HOM05D001425 ORTHO05D001272 1.4e-15 86.7 132 44.7
Medtr8g085150 Medicago truncatula HOM05D001425 ORTHO05D001272 1.4e-15 86.7 125 45.6
PSO170G6757 Papaver somniferum HOM05D001425 ORTHO05D001272 1.9e-15 86.3 122 46.7
FAN25G1823 Fragaria x ananassa HOM05D001425 ORTHO05D001272 3.2e-15 85.5 132 43.9
Manes.16G038700 Manihot esculenta HOM05D001425 ORTHO05D001272 3.2e-15 85.5 128 48.4
RcHm_v2.0_Chr5g0011571 Rosa chinensis HOM05D001425 ORTHO05D001272 3.2e-15 85.5 125 46.4
GSVIVG01020751001 Vitis vinifera HOM05D001425 ORTHO05D001272 3.2e-15 85.5 117 47.0
FAN16G2157 Fragaria x ananassa HOM05D001425 ORTHO05D001272 5.4e-15 84.7 132 43.9
Sabra04G0040100 Salix brachista HOM05D001425 ORTHO05D001272 5.4e-15 84.7 131 46.6
Sed0026621 Sechium edule HOM05D001425 ORTHO05D001272 7.0e-15 84.3 125 46.4
Lj4g0009651 Lotus japonicus HOM05D001425 ORTHO05D001272 9.2e-15 84.0 124 45.2
Medtr8g087020 Medicago truncatula HOM05D001425 ORTHO05D001272 9.2e-15 84.0 132 41.7
arahy.Tifrunner.gnm1.ann1.A8KLXT Arachis hypogaea HOM05D001425 ORTHO05D001272 1.6e-14 83.2 120 47.5
Eucgr.D00475 Eucalyptus grandis HOM05D001425 ORTHO05D001272 2.1e-14 82.8 126 44.4
Potri.011G070000 Populus trichocarpa HOM05D001425 ORTHO05D001272 2.1e-14 82.8 128 46.1
Ca_17900_v3 Cicer arietinum L. HOM05D001425 ORTHO05D001272 2.7e-14 82.4 124 47.6
Sabra11G0058000 Salix brachista HOM05D001425 ORTHO05D001272 2.7e-14 82.4 132 42.4
Manes.17G058800 Manihot esculenta HOM05D001425 ORTHO05D001272 3.5e-14 82.0 128 46.1
THA.LOC104812642 Tarenaya hassleriana HOM05D001425 ORTHO05D001272 3.5e-14 82.0 127 44.1
Glyma.08G118100 Glycine max HOM05D001425 ORTHO05D001272 4.6e-14 81.6 126 42.1
CDE06G2729 Ceratophyllum demersum HOM05D001425 ORTHO05D001272 6.0e-14 81.3 116 47.4
FAN21G1795 Fragaria x ananassa HOM05D001425 ORTHO05D001272 6.0e-14 81.3 132 44.7
FAN13G2418 Fragaria x ananassa HOM05D001425 ORTHO05D001272 7.8e-14 80.9 137 43.8
Psat7g069880 Pisum sativum HOM05D001425 ORTHO05D001272 1.3e-13 80.1 114 43.0
Hund21446 Selenicereus undatus HOM05D001425 ORTHO05D001272 1.3e-13 80.1 131 41.2
arahy.Tifrunner.gnm1.ann1.T2RFJB Arachis hypogaea HOM05D001425 ORTHO05D001272 2.3e-13 79.3 124 46.0
ClCG01G023870 Citrullus lanatus HOM05D001425 ORTHO05D001272 8.6e-13 77.4 125 44.0
MELO3C007201.2 Cucumis melo HOM05D001425 ORTHO05D001272 1.1e-12 77.0 126 43.7
EL10Ac8g20563 Beta vulgaris HOM05D001425 ORTHO05D001272 2.5e-12 75.9 118 42.4
AT1G29270 Arabidopsis thaliana HOM05D001425 ORTHO05D001272 4.3e-12 75.1 128 43.0
CsaV3_6G051020 Cucumis sativus L. HOM05D001425 ORTHO05D001272 4.3e-12 75.1 126 42.9
Sed0000998 Sechium edule HOM05D001425 ORTHO05D001272 4.3e-12 75.1 125 42.4
TPR.G33016 Trifolium pratense HOM05D001425 ORTHO05D001272 4.3e-12 75.1 82 52.4
THA.LOC104820606 Tarenaya hassleriana HOM05D001425 ORTHO05D001272 2.1e-11 72.8 121 45.5
Aqoxy1G01998 Aquilegia oxysepala HOM05D001425 ORTHO05D001272 2.8e-11 72.4 108 39.8
Cfa000649 Carpinus fangiana HOM05D001425 ORTHO05D001272 3.6e-11 72.0 130 38.5
CiPaw.09G072500 Carya illinoinensis HOM05D001425 ORTHO05D001272 3.6e-11 72.0 130 39.2
Cpa.g.sc7.94 Carica papaya HOM05D001425 ORTHO05D001272 1.4e-10 70.1 129 40.3
TPR.G6770 Trifolium pratense HOM05D001425 ORTHO05D001272 3.1e-10 68.9 75 52.0
Haze_06180 Corylus avellana HOM05D001425 ORTHO05D001272 8.9e-10 67.4 71 49.3
AL1G43060 Arabidopsis lyrata HOM05D001425 ORTHO05D001272 1.5e-09 66.6 120 41.7
Sp1g25200 Schrenkiella parvula HOM05D001425 ORTHO05D001272 2.0e-09 66.2 115 43.5
Sc05g0006910 Simmondsia chinensis HOM05D001425 ORTHO05D001272 7.5e-09 64.3 123 39.0
ATR0012G037 Amborella trichopoda HOM05D001425 ORTHO05D001272 9.9e-09 63.9 113 38.9
Carub.0001s2748 Capsella rubella HOM05D001425 ORTHO05D001272 9.9e-09 63.9 128 39.1
Glyma.02G259800 Glycine max HOM05D001425 ORTHO05D001272 1.3e-08 63.5 121 43.8
A07p10760 Brassica napus HOM05D001425 ORTHO05D001272 1.7e-08 63.2 120 39.2
Glyma.14G053900 Glycine max HOM05D001425 ORTHO05D001272 1.7e-08 63.2 121 42.1
TAR626G0916 Trochodendron aralioides HOM05D001425 ORTHO05D001272 1.7e-08 63.2 63 55.6
Ah.09g233510 Amaranthus hybridus HOM05D037095 ORTHO05D001272 2.9e-08 62.4 79 48.1
MSTRG.18961 Avicennia marina HOM05D001425 ORTHO05D001272 3.7e-08 62.0 121 40.5
BcaB03g13893 Brassica carinata HOM05D001425 ORTHO05D001272 3.7e-08 62.0 120 37.5
BcaC06g35421 Brassica carinata HOM05D001425 ORTHO05D001272 4.9e-08 61.6 98 43.9
MBI15_g26251_MAGBIO Magnolia biondii HOM05D001425 ORTHO05D001272 4.9e-08 61.6 121 42.1
Rhsim03G0149700 Rhododendron simsii HOM05D001425 ORTHO05D001272 8.3e-08 60.8 119 40.3
C07p16370 Brassica napus HOM05D001425 ORTHO05D001272 1.1e-07 60.5 98 42.9
BolC7t42131H Brassica oleracea HOM05D001425 ORTHO05D001272 1.1e-07 60.5 98 42.9
BraA07t28870Z Brassica rapa HOM05D001425 ORTHO05D001272 1.1e-07 60.5 120 38.3
ATR1127G099 Amborella trichopoda HOM05D001425 ORTHO05D001272 2.4e-07 59.3 123 39.0
Psat3g192120 Pisum sativum HOM05D001425 ORTHO05D001272 3.2e-07 58.9 122 37.7
Aa31LG6G6260 Aethionema arabicum HOM05D001425 ORTHO05D001272 4.1e-07 58.5 114 42.1
Thhalv10009779m.g Eutrema salsugineum HOM05D001425 ORTHO05D001272 4.1e-07 58.5 108 40.7
Phvul.008G218900 Phaseolus vulgaris HOM05D001425 ORTHO05D001272 4.1e-07 58.5 121 42.1
Atru.chr12.141 Acer truncatum HOM05D001425 ORTHO05D001272 5.4e-07 58.2 124 37.9
CANSAT35G1960 Cannabis sativa HOM05D001425 ORTHO05D001272 7.1e-07 57.8 124 38.7
ClCG11G005870 Citrullus lanatus HOM05D001425 ORTHO05D001272 7.1e-07 57.8 131 36.6
TWI73G0257 Tripterygium wilfordii HOM05D001425 ORTHO05D001272 7.1e-07 57.8 123 39.8
Medtr7g072470 Medicago truncatula HOM05D001425 ORTHO05D001272 9.2e-07 57.4 122 34.4
RcHm_v2.0_Chr1g0371511 Rosa chinensis HOM05D001425 ORTHO05D001272 9.2e-07 57.4 122 37.7
Sed0025179 Sechium edule HOM05D001425 ORTHO05D001272 9.2e-07 57.4 122 38.5
CsaV3_6G002130 Cucumis sativus L. HOM05D001425 ORTHO05D001272 1.2e-06 57.0 125 36.0
Thecc.04G025700 Theobroma cacao HOM05D001425 ORTHO05D001272 1.2e-06 57.0 122 36.9
VMungo0647G1157 Vigna mungo HOM05D001425 ORTHO05D001272 1.2e-06 57.0 121 40.5
CARHR028590 Cardamine hirsuta HOM05D001425 ORTHO05D001272 2.1e-06 56.2 85 47.1
Eucgr.A00656 Eucalyptus grandis HOM05D001425 ORTHO05D001272 2.1e-06 56.2 119 40.3
COL.COLO4_29264 Corchorus olitorius HOM05D001425 ORTHO05D001272 2.7e-06 55.8 122 38.5
Duzib264G0849 Durio zibethinus HOM05D001425 ORTHO05D001272 2.7e-06 55.8 122 38.5
Phvul.010G078900 Phaseolus vulgaris HOM05D001425 ORTHO05D001272 2.7e-06 55.8 121 37.2
Dinv21813 Davidia involucrata HOM05D001425 ORTHO05D001272 3.5e-06 55.5 123 39.0
Lalb_Chr07g0190771 Lupinus albus HOM05D001425 ORTHO05D001272 3.5e-06 55.5 122 36.9
PGR042G0512 Punica granatum HOM05D001425 ORTHO05D001272 3.5e-06 55.5 130 36.9
CDE02G3304 Ceratophyllum demersum HOM05D001501 ORTHO05D001329 4.6e-06 55.1 78 50.0
VMungo1383G1922 Vigna mungo HOM05D001425 ORTHO05D001272 4.6e-06 55.1 124 35.5
Duzib147G1434 Durio zibethinus HOM05D001425 ORTHO05D001272 6.0e-06 54.7 123 37.4
Duzib168G1504 Durio zibethinus HOM05D001425 ORTHO05D001272 6.0e-06 54.7 122 37.7
FvH4_7g25520 Fragaria vesca HOM05D001425 ORTHO05D001272 6.0e-06 54.7 122 34.4
FAN03G0480 Fragaria x ananassa HOM05D001425 ORTHO05D001272 6.0e-06 54.7 122 34.4
FAN06G4664 Fragaria x ananassa HOM05D001425 ORTHO05D001272 6.0e-06 54.7 122 34.4
Glyma.18G210700 Glycine max HOM05D001425 ORTHO05D001272 6.0e-06 54.7 121 35.5
Gohir.D09G032400 Gossypium hirsutum HOM05D001425 ORTHO05D001272 6.0e-06 54.7 122 36.9
Sabra13G0123900 Salix brachista HOM05D001425 ORTHO05D001272 6.0e-06 54.7 121 37.2
Aqoxy4G02152 Aquilegia oxysepala HOM05D001425 ORTHO05D001272 7.8e-06 54.3 113 36.3
Ciclev10012991m.g Citrus clementina HOM05D001425 ORTHO05D001272 7.8e-06 54.3 123 36.6
MD01G1161700 Malus domestica HOM05D001425 ORTHO05D001272 7.8e-06 54.3 125 36.0
MD04G1170700 Malus domestica HOM05D001425 ORTHO05D001272 7.8e-06 54.3 119 39.5
Phvul.008G087200 Phaseolus vulgaris HOM05D001425 ORTHO05D001272 7.8e-06 54.3 123 35.8


User provided reference genes

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