Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.1e-112 409.1 207 100.0
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.8e-109 398.7 212 96.2
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 2.5e-102 375.6 212 89.6
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 5.6e-102 374.4 212 89.2
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 5.6e-102 374.4 212 89.2
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 4.8e-101 371.3 213 88.7
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 9.3e-89 330.5 179 91.1
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 5.1e-87 324.7 222 74.8
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 8.8e-87 323.9 213 76.5
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.9e-86 322.8 207 77.8
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 4.1e-84 315.1 217 73.3
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 5.3e-84 314.7 220 72.3
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 6.9e-84 314.3 214 75.7
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 1.5e-83 313.2 217 71.9
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 5.9e-83 311.2 205 76.6
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 7.7e-83 310.8 222 70.3
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 7.7e-83 310.8 222 72.1
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 2.2e-82 309.3 214 73.8
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 3.8e-82 308.5 205 75.1
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 5.0e-82 308.1 215 73.5
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 4.2e-81 305.1 214 72.9
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 5.5e-81 304.7 213 74.6
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 1.2e-80 303.5 218 69.7
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 2.7e-80 302.4 197 75.1
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 3.6e-80 302.0 200 73.5
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 3.6e-80 302.0 214 73.4
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 4.7e-80 301.6 200 72.5
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 7.9e-80 300.8 192 77.6
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 1.0e-79 300.4 221 68.3
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 3.9e-79 298.5 191 77.0
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 2.0e-78 296.2 200 71.5
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 2.6e-78 295.8 211 71.6
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 4.4e-78 295.0 207 69.1
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 7.4e-78 294.3 185 77.3
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 9.7e-78 293.9 208 69.7
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 2.2e-77 292.7 208 70.7
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 2.8e-77 292.4 185 75.1
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 4.8e-77 291.6 208 70.2
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 6.3e-77 291.2 192 76.6
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 6.3e-77 291.2 185 73.5
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 1.1e-76 290.4 192 74.0
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 1.1e-76 290.4 212 69.3
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 1.1e-76 290.4 185 75.1
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 1.1e-76 290.4 180 76.7
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.4e-76 290.0 201 70.6
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 1.8e-76 289.7 198 73.7
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 1.8e-76 289.7 189 74.6
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 5.3e-76 288.1 215 68.8
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.2e-75 287.0 207 69.1
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 2.6e-75 285.8 201 69.7
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.9e-74 282.3 191 73.3
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 2.9e-74 282.3 222 68.0
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 3.8e-74 282.0 209 67.5
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 5.0e-74 281.6 209 66.5
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 8.5e-74 280.8 186 74.2
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 1.4e-73 280.0 179 74.9
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 2.5e-73 279.3 186 72.6
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 2.5e-73 279.3 205 68.3
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 2.5e-73 279.3 186 73.7
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 3.2e-73 278.9 186 72.6
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 4.2e-73 278.5 186 73.7
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 5.5e-73 278.1 178 75.3
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 9.4e-73 277.3 186 71.5
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 1.2e-72 276.9 211 65.4
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 2.1e-72 276.2 186 73.7
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 4.7e-72 275.0 189 70.9
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 4.7e-72 275.0 185 73.0
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 1.0e-71 273.9 186 71.0
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 1.4e-71 273.5 195 69.2
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 1.4e-71 273.5 186 72.0
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 1.4e-71 273.5 192 70.8
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 1.8e-71 273.1 183 73.2
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 1.8e-71 273.1 206 68.4
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 1.8e-71 273.1 207 67.6
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 8.8e-71 270.8 195 69.2
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 2.6e-70 269.2 183 72.1
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 4.4e-70 268.5 200 67.0
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 4.4e-70 268.5 179 71.5
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 3.7e-69 265.4 186 69.4
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 1.4e-68 263.5 176 71.6
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.6e-67 260.0 203 66.5
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 3.5e-67 258.8 147 89.1
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 7.7e-67 257.7 175 71.4
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 1.0e-66 257.3 299 47.8
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 5.0e-66 255.0 170 72.9
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 5.0e-66 255.0 170 72.9
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 5.0e-66 255.0 170 72.9
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 6.5e-66 254.6 172 71.5
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 8.5e-66 254.2 186 69.9
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 8.5e-66 254.2 169 72.8
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 1.1e-65 253.8 170 72.4
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 1.1e-65 253.8 170 72.4
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 1.5e-65 253.4 199 63.8
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 1.9e-65 253.1 169 72.2
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 2.5e-65 252.7 170 71.8
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 2.5e-65 252.7 170 71.8
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 3.2e-65 252.3 170 71.8
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 3.2e-65 252.3 170 70.6
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 3.2e-65 252.3 170 71.8
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 7.2e-65 251.1 174 71.8
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 2.7e-64 249.2 199 64.8
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 3.6e-64 248.8 196 62.8
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 6.1e-64 248.1 227 59.0
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 8.0e-64 247.7 170 71.2
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 8.0e-64 247.7 170 71.2
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 8.0e-64 247.7 170 71.2
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 8.0e-64 247.7 192 63.5
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 6.7e-63 244.6 199 62.8
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 2.6e-62 242.7 177 65.5
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 6.3e-61 238.0 196 60.7
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 2.4e-60 236.1 286 47.6
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 2.1e-56 223.0 212 55.7
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 8.0e-56 221.1 168 67.3
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 8.0e-56 221.1 211 55.9
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 1.0e-55 220.7 151 72.8
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 1.4e-55 220.3 152 73.7
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 1.4e-55 220.3 222 52.3
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 1.7e-53 213.4 180 60.0
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 1.7e-53 213.4 180 60.0
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 1.1e-52 210.7 180 58.9
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 4.1e-52 208.8 135 74.8
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 3.5e-51 205.7 172 65.1
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 6.5e-50 201.4 174 59.2
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.1e-49 200.7 151 69.5
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 2.5e-49 199.5 213 52.1
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 9.5e-49 197.6 118 81.4
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 1.0e-47 194.1 141 64.5
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 4.9e-45 185.3 121 75.2
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.7e-42 176.8 108 76.9
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 8.6e-42 174.5 143 63.6
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.8e-39 166.8 157 58.6
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 2.7e-35 152.9 126 59.5
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 3.5e-35 152.5 113 61.9
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 1.7e-34 150.2 131 56.5
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 1.7e-34 150.2 113 60.2
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 9.8e-30 134.4 94 71.3
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 1.7e-29 133.7 92 71.7
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 1.1e-28 131.0 115 61.7
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 1.1e-28 131.0 115 61.7
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 2.3e-26 123.2 99 66.7
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 8.1e-24 114.8 89 64.0
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 5.8e-22 108.6 61 83.6
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 3.9e-18 95.9 90 52.2
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 5.6e-17 92.0 66 68.2
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 6.2e-16 88.6 76 56.6
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 3.2e-12 76.3 73 50.7
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 1.7e-10 70.5 54 59.3
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 2.3e-10 70.1 48 70.8
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 1.6e-08 63.9 46 56.5


User provided reference genes

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