Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002391g0010 Nicotiana tabacum HOM05D000921 ORTHO05D004782 0.0e+00 2735.7 1391 100.0
Nitab4.5_0000131g0100 Nicotiana tabacum HOM05D000921 ORTHO05D004782 0.0e+00 2565.0 1454 91.4
Sopen04g030240 Solanum pennellii HOM05D000921 ORTHO05D004782 0.0e+00 2301.6 1398 84.7
CAN.G475.8 Capsicum annuum HOM05D000921 ORTHO05D004782 0.0e+00 2262.3 1321 88.1
Peaxi162Scf00454g00119 Petunia axillaris HOM05D000921 ORTHO05D004782 0.0e+00 2198.7 1395 82.4
Solyc04g076500.4 Solanum lycopersicum HOM05D000921 ORTHO05D004782 0.0e+00 1813.1 1124 83.8
Actinidia19246 Actinidia chinensis HOM05D000921 ORTHO05D004782 0.0e+00 1568.9 1395 61.9
TAR381G0975 Trochodendron aralioides HOM05D000921 ORTHO05D004782 0.0e+00 1546.9 1402 59.7
GSVIVG01009194001 Vitis vinifera HOM05D000921 ORTHO05D004782 0.0e+00 1545.0 1415 60.0
QL09p018095 Quercus lobata HOM05D000921 ORTHO05D004782 0.0e+00 1523.8 1410 58.8
CiPaw.07G164000 Carya illinoinensis HOM05D000921 ORTHO05D004782 0.0e+00 1513.0 1397 58.8
Thecc.08G072600 Theobroma cacao HOM05D000921 ORTHO05D004782 0.0e+00 1513.0 1393 60.4
TWI56G0737 Tripterygium wilfordii HOM05D000921 ORTHO05D004782 0.0e+00 1495.7 1397 58.6
Dinv42602 Davidia involucrata HOM05D000921 ORTHO05D004782 0.0e+00 1495.3 1397 59.7
Prupe.1G534000 Prunus persica HOM05D000921 ORTHO05D004782 0.0e+00 1495.3 1415 57.9
Manes.18G056822 Manihot esculenta HOM05D000921 ORTHO05D004782 0.0e+00 1492.2 1395 58.8
Potri.002G111000 Populus trichocarpa HOM05D000921 ORTHO05D004782 0.0e+00 1486.5 1398 58.6
Atru.chr13.992 Acer truncatum HOM05D000921 ORTHO05D004782 0.0e+00 1483.0 1394 58.0
CANSAT54G2772 Cannabis sativa HOM05D000921 ORTHO05D004782 0.0e+00 1474.5 1409 58.0
COL.COLO4_35265 Corchorus olitorius HOM05D000921 ORTHO05D004782 0.0e+00 1468.4 1486 56.3
Migut.N02862 Erythranthe guttata HOM05D000921 ORTHO05D004782 0.0e+00 1465.3 1394 57.8
MD15G1387600 Malus domestica HOM05D000921 ORTHO05D004782 0.0e+00 1464.1 1410 56.9
Nn5g29852 Nelumbo nucifera HOM05D000921 ORTHO05D004782 0.0e+00 1463.4 1403 56.9
Haze_22475 Corylus avellana HOM05D000921 ORTHO05D004782 0.0e+00 1462.2 1349 60.0
Rhsim06G0071200 Rhododendron simsii HOM05D000921 ORTHO05D004782 0.0e+00 1457.6 1509 55.1
Gorai.005G097000 Gossypium raimondii HOM05D000921 ORTHO05D004782 0.0e+00 1451.8 1398 57.9
Ciclev10000002m.g Citrus clementina HOM05D000921 ORTHO05D004782 0.0e+00 1450.6 1402 56.7
Eucgr.F00430 Eucalyptus grandis HOM05D000921 ORTHO05D004782 0.0e+00 1447.2 1573 52.2
Gohir.D02G086100 Gossypium hirsutum HOM05D000921 ORTHO05D004782 0.0e+00 1443.7 1398 57.7
Aqoxy6G00846 Aquilegia oxysepala HOM05D000921 ORTHO05D004782 0.0e+00 1438.7 1395 56.5
MSTRG.24432 Avicennia marina HOM05D000921 ORTHO05D004782 0.0e+00 1430.6 1326 58.5
RcHm_v2.0_Chr7g0235181 Rosa chinensis HOM05D000921 ORTHO05D004782 0.0e+00 1428.3 1413 56.3
Lsat_1_v5_gn_6_107401 Lactuca sativa HOM05D000921 ORTHO05D004782 0.0e+00 1426.4 1383 56.7
FvH4_5g34530 Fragaria vesca HOM05D000921 ORTHO05D004782 0.0e+00 1419.1 1415 55.7
Sabra02G0087600 Salix brachista HOM05D000921 ORTHO05D004782 0.0e+00 1408.7 1425 55.9
HanXRQChr05g0163481 Helianthus annuus HOM05D000921 ORTHO05D004782 0.0e+00 1408.3 1381 56.3
SGA_v2.0_scaffold28G11888 Striga asiatica HOM05D000921 ORTHO05D004782 0.0e+00 1406.3 1400 56.4
Duzib116G0480 Durio zibethinus HOM05D000921 ORTHO05D004782 0.0e+00 1402.1 1404 56.6
PGR042G3444 Punica granatum HOM05D000921 ORTHO05D004782 0.0e+00 1398.6 1399 55.1
FAN13G0958 Fragaria x ananassa HOM05D000921 ORTHO05D004782 0.0e+00 1390.2 1418 54.9
Medtr3g100060 Medicago truncatula HOM05D000921 ORTHO05D004782 0.0e+00 1386.3 1339 56.8
Glyma.04G096100 Glycine max HOM05D000921 ORTHO05D004782 0.0e+00 1376.7 1340 56.8
Glyma.06G097800 Glycine max HOM05D000921 ORTHO05D004782 0.0e+00 1372.5 1340 56.9
MELO3C003512.2 Cucumis melo HOM05D000921 ORTHO05D004782 0.0e+00 1370.1 1398 54.2
Lj1g0023313 Lotus japonicus HOM05D000921 ORTHO05D004782 0.0e+00 1359.7 1344 56.4
ECA246G1489 Erigeron canadensis HOM05D000921 ORTHO05D004782 0.0e+00 1358.6 1391 54.1
Lalb_Chr23g0270001 Lupinus albus HOM05D000921 ORTHO05D004782 0.0e+00 1357.4 1344 56.4
TPR.G6323 Trifolium pratense HOM05D000921 ORTHO05D004782 0.0e+00 1355.9 1341 55.3
Phvul.009G035500 Phaseolus vulgaris HOM05D000921 ORTHO05D004782 0.0e+00 1349.7 1343 56.2
Psat5g049440 Pisum sativum HOM05D000921 ORTHO05D004782 0.0e+00 1349.7 1340 55.1
Hund26819 Selenicereus undatus HOM05D000921 ORTHO05D004782 0.0e+00 1349.0 1400 52.5
DCAR_012852 Daucus carota HOM05D000921 ORTHO05D004782 0.0e+00 1345.9 1427 53.0
arahy.Tifrunner.gnm1.ann1.YNEA8K Arachis hypogaea HOM05D000921 ORTHO05D004782 0.0e+00 1341.3 1393 54.2
Ca_16011_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004782 0.0e+00 1339.3 1363 54.7
AUR62019100 Chenopodium quinoa HOM05D000921 ORTHO05D004782 0.0e+00 1308.9 1447 51.5
CsaV3_3G048070 Cucumis sativus L. HOM05D000921 ORTHO05D004782 0.0e+00 1291.9 1388 52.3
EL10Ac1g00502 Beta vulgaris HOM05D000921 ORTHO05D004782 0.0e+00 1268.1 1355 52.1
FAN18G1361 Fragaria x ananassa HOM05D000921 ORTHO05D004782 0.0e+00 1261.5 1438 51.0
DCAR_019322 Daucus carota HOM05D000921 ORTHO05D004782 0.0e+00 1256.1 1362 51.5
Sc06g0003790 Simmondsia chinensis HOM05D000921 ORTHO05D004782 0.0e+00 1233.0 1401 50.4
ClCG11G014650 Citrullus lanatus HOM05D000921 ORTHO05D004782 0.0e+00 1232.2 1375 51.7
MD08G1200600 Malus domestica HOM05D000921 ORTHO05D004782 0.0e+00 1209.5 1197 55.7
FAN08G1747 Fragaria x ananassa HOM05D000921 ORTHO05D004782 0.0e+00 1206.8 1439 49.5
AUR62014358 Chenopodium quinoa HOM05D000921 ORTHO05D004782 0.0e+00 1195.3 1404 50.3
ATR0767G173 Amborella trichopoda HOM05D000921 ORTHO05D004782 0.0e+00 1193.7 1365 49.5
Cc10_g08460 Coffea canephora HOM05D000921 ORTHO05D004782 0.0e+00 1172.9 1012 62.8
Gohir.A06G031500 Gossypium hirsutum HOM05D000921 ORTHO05D004782 0.0e+00 1150.2 1444 48.2
Ah.05g171400 Amaranthus hybridus HOM05D000921 ORTHO05D004782 0.0e+00 1142.5 1155 54.2
Zm00001eb207540 Zea mays HOM05D000921 ORTHO05D004782 0.0e+00 1142.5 1361 47.2
Lj4C739G4 Lonicera japonica HOM05D000921 ORTHO05D004782 0.0e+00 1112.1 1142 55.2
Oeu028591.1 Olea europaea HOM05D000921 ORTHO05D004782 2.4e-297 1026.2 1379 47.0
Gohir.D06G030700 Gossypium hirsutum HOM05D000921 ORTHO05D004782 3.8e-287 992.3 1053 54.1
Gorai.010G033700 Gossypium raimondii HOM05D000921 ORTHO05D004782 3.3e-286 989.2 1053 53.8
Sed0023880 Sechium edule HOM05D000921 ORTHO05D004782 3.6e-285 985.7 903 58.0
CDE02G0144 Ceratophyllum demersum HOM05D000921 ORTHO05D004782 1.4e-273 947.2 1355 42.9
unitig_578.g16055 Utricularia gibba HOM05D000921 ORTHO05D004782 2.4e-273 946.4 1379 43.1
vmacro21345 Vaccinium macrocarpon HOM05D000921 ORTHO05D004782 6.8e-268 928.3 740 65.4
CSS0003023 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004782 5.1e-255 885.6 933 53.5
AagrBONN_evm.TU.Sc2ySwM_117.180 Anthoceros agrestis HOM05D000921 ORTHO05D004782 2.9e-250 869.8 1433 37.3
HPP92_013154 Vanilla planifolia HOM05D000921 ORTHO05D004782 1.3e-245 854.4 1127 46.3
Mapoly0001s0542 Marchantia polymorpha HOM05D000921 ORTHO05D004782 9.3e-241 838.2 1524 35.4
Aa31LG2G10910 Aethionema arabicum HOM05D000921 ORTHO05D004782 4.2e-233 812.8 742 57.0
Pp3c20_23460 Physcomitrium patens HOM05D000921 ORTHO05D004782 5.6e-230 802.4 1499 35.2
AT1G58230 Arabidopsis thaliana HOM05D000921 ORTHO05D004782 4.0e-228 796.2 745 56.1
Sp2g05370 Schrenkiella parvula HOM05D000921 ORTHO05D004782 3.4e-227 793.1 750 56.1
AL2G18210 Arabidopsis lyrata HOM05D000921 ORTHO05D004782 1.1e-225 788.1 765 54.6
Carub.0002s0634 Capsella rubella HOM05D000921 ORTHO05D004782 5.5e-225 785.8 745 56.0
BcaNung06615 Brassica carinata HOM05D000921 ORTHO05D004782 2.1e-224 783.9 744 55.5
C01p35890 Brassica napus HOM05D000921 ORTHO05D004782 1.3e-223 781.2 747 55.6
BolC1t03548H Brassica oleracea HOM05D000921 ORTHO05D004782 1.3e-223 781.2 747 55.6
Thhalv10023210m.g Eutrema salsugineum HOM05D000921 ORTHO05D004782 2.3e-223 780.4 755 55.4
BraA01t02962Z Brassica rapa HOM05D000921 ORTHO05D004782 1.6e-221 774.2 730 56.0
A01p28340 Brassica napus HOM05D000921 ORTHO05D004782 1.4e-220 771.2 730 55.8
CARHR053760 Cardamine hirsuta HOM05D000921 ORTHO05D004782 1.3e-218 764.6 730 54.8
Cpa.g.sc21.32 Carica papaya HOM05D000921 ORTHO05D004782 4.5e-179 633.3 705 53.6
SEGI_30803 Sequoiadendron giganteum HOM05D000921 ORTHO05D004782 9.2e-164 582.4 816 42.6
Gohir.A02G078900 Gossypium hirsutum HOM05D000921 ORTHO05D004782 2.7e-155 554.3 420 66.2
Cpa.g.sc21.33 Carica papaya HOM05D000921 ORTHO05D004782 8.9e-151 539.3 459 63.0
VMungo1309G2985 Vigna mungo HOM05D000921 ORTHO05D004782 1.2e-150 538.9 714 46.9
CBR_g9089 Chara braunii HOM05D000921 ORTHO05D004782 2.3e-138 498.0 720 38.2
SMO169G0155 Selaginella moellendorffii HOM05D000921 ORTHO05D004782 2.4e-127 461.5 612 42.5
Os02g0162766 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004782 3.0e-122 444.5 710 40.3
THA.LOC104816792 Tarenaya hassleriana HOM05D000921 ORTHO05D004782 9.0e-111 406.4 361 56.8
Cc10_g08450 Coffea canephora HOM05D000921 ORTHO05D004782 2.0e-110 405.2 397 56.4
vmacro21344 Vaccinium macrocarpon HOM05D000921 ORTHO05D004782 9.3e-108 396.4 551 47.0
Gohir.D06G030750 Gossypium hirsutum HOM05D000921 ORTHO05D004782 5.0e-101 374.0 384 56.5
THA.LOC109116813 Tarenaya hassleriana HOM05D000921 ORTHO05D004782 5.0e-101 374.0 353 57.2
Gorai.010G033800 Gossypium raimondii HOM05D000921 ORTHO05D004782 1.9e-100 372.1 384 55.5
Os06g0678700 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004782 3.7e-88 331.3 590 38.0
Gohir.A02G078801 Gossypium hirsutum HOM05D000921 ORTHO05D004782 4.8e-72 277.7 302 52.0
HanXRQChr16g0501971 Helianthus annuus HOM05D000921 ORTHO05D004782 4.0e-66 258.1 190 67.4
Sed0001609 Sechium edule HOM05D000921 ORTHO05D004782 7.5e-65 253.8 302 50.0
Lj4A739G26 Lonicera japonica HOM05D000921 ORTHO05D004782 2.1e-59 235.7 268 51.5
MD08G1200500 Malus domestica HOM05D000921 ORTHO05D004782 6.3e-56 224.2 199 58.3
CBR_g40583 Chara braunii HOM05D000921 ORTHO05D004782 7.8e-46 190.7 411 33.8
Ah.05g171390 Amaranthus hybridus HOM05D000921 ORTHO05D004782 1.2e-41 176.8 203 48.8
SEGI_39738 Sequoiadendron giganteum HOM05D000921 ORTHO05D004782 4.6e-38 164.9 213 42.3
HPP92_013164 Vanilla planifolia HOM05D000921 ORTHO05D004782 3.1e-34 152.1 191 42.9
PRCOL_00007064 Prasinoderma coloniale HOM05D000921 ORTHO05D004782 1.7e-32 146.4 501 24.8
arahy.Tifrunner.gnm1.ann1.KCR83B Arachis hypogaea HOM05D000921 ORTHO05D004782 2.4e-26 125.9 184 40.8
CSS0012885 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004782 1.5e-25 123.2 334 34.1
Zm00001eb074430 Zea mays HOM05D000921 ORTHO05D002852 7.8e-22 110.9 334 25.7
Psat3g104040 Pisum sativum HOM05D000921 ORTHO05D002852 3.9e-21 108.6 340 25.6
Os04g0555600 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 6.6e-21 107.8 334 25.1
ClCG05G002030 Citrullus lanatus HOM05D000921 ORTHO05D002852 1.5e-20 106.7 340 25.3
HanXRQChr03g0093641 Helianthus annuus HOM05D000921 ORTHO05D002852 1.5e-20 106.7 310 25.2
Dinv32396 Davidia involucrata HOM05D000921 ORTHO05D002852 2.5e-20 105.9 340 25.0
Gohir.A11G082900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 4.3e-20 105.1 350 24.9
MELO3C006169.2 Cucumis melo HOM05D000921 ORTHO05D002852 5.6e-20 104.8 340 25.0
Gohir.D11G087000 Gossypium hirsutum HOM05D000921 ORTHO05D002852 5.6e-20 104.8 350 24.6
TPR.G37773 Trifolium pratense HOM05D000921 ORTHO05D002852 5.6e-20 104.8 340 25.0
Gorai.007G092900 Gossypium raimondii HOM05D000921 ORTHO05D002852 7.3e-20 104.4 350 24.6
Ca_07837_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 9.6e-20 104.0 341 25.5
Medtr7g075660 Medicago truncatula HOM05D000921 ORTHO05D002852 9.6e-20 104.0 340 24.7
Zm00001eb249850 Zea mays HOM05D000921 ORTHO05D002852 9.6e-20 104.0 328 25.0
BraA04t15853Z Brassica rapa HOM05D000921 ORTHO05D002852 1.2e-19 103.6 323 24.5
Sc26g0001150 Simmondsia chinensis HOM05D000921 ORTHO05D002852 1.2e-19 103.6 340 24.1
A04p01340 Brassica napus HOM05D000921 ORTHO05D002852 1.6e-19 103.2 326 25.5
Os02g0663300 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 1.6e-19 103.2 347 25.9
Gohir.D08G042932 Gossypium hirsutum HOM05D000921 ORTHO05D002852 3.6e-19 102.1 337 25.2
MD02G1199600 Malus domestica HOM05D000921 ORTHO05D002852 3.6e-19 102.1 382 23.6
Gohir.D08G149700 Gossypium hirsutum HOM05D000921 ORTHO05D002852 1.4e-18 100.1 347 25.4
Gorai.004G155500 Gossypium raimondii HOM05D000921 ORTHO05D002852 1.4e-18 100.1 347 25.4
TAR636G1827 Trochodendron aralioides HOM05D000921 ORTHO05D002852 1.8e-18 99.8 344 23.8
CDE11G1134 Ceratophyllum demersum HOM05D000921 ORTHO05D002852 2.4e-18 99.4 352 24.4
Gohir.A08G031900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 4.0e-18 98.6 350 24.9
Gorai.004G041500 Gossypium raimondii HOM05D000921 ORTHO05D002852 4.0e-18 98.6 350 24.9
Lsat_1_v5_gn_3_135480 Lactuca sativa HOM05D000921 ORTHO05D002852 5.2e-18 98.2 304 23.7
Oeu029683.1 Olea europaea HOM05D000921 ORTHO05D002852 6.9e-18 97.8 340 24.7
PSO478G4503 Papaver somniferum HOM05D000921 ORTHO05D002852 1.2e-17 97.1 351 23.6
PSO782G1119 Papaver somniferum HOM05D000921 ORTHO05D002852 1.2e-17 97.1 351 23.9
Actinidia09569 Actinidia chinensis HOM05D000921 ORTHO05D002852 7.6e-17 94.4 340 24.4
HPP92_009978 Vanilla planifolia HOM05D000921 ORTHO05D002852 1.3e-16 93.6 339 22.4
arahy.Tifrunner.gnm1.ann1.FVGU3J Arachis hypogaea HOM05D000921 ORTHO05D002852 2.9e-16 92.4 343 23.6
Lj7C526G8 Lonicera japonica HOM05D000921 ORTHO05D002852 2.9e-16 92.4 305 26.2
arahy.Tifrunner.gnm1.ann1.UYJG1L Arachis hypogaea HOM05D000921 ORTHO05D002852 3.8e-16 92.0 343 23.6
Glyma.03G021400 Glycine max HOM05D000921 ORTHO05D002852 3.8e-16 92.0 338 23.4
Nn6g34350 Nelumbo nucifera HOM05D000921 ORTHO05D002852 3.8e-16 92.0 350 23.7
SHI13503 Sapria himalayana HOM05D000921 ORTHO05D002852 3.8e-16 92.0 348 24.1
HPP92_013163 Vanilla planifolia HOM05D000921 ORTHO05D004782 4.9e-16 91.7 105 43.8
SMO347G0262 Selaginella moellendorffii HOM05D000921 ORTHO05D002852 1.9e-15 89.7 334 23.4
CBR_g26195 Chara braunii HOM05D000921 ORTHO05D002852 4.2e-15 88.6 291 24.1
Hma1.2p1_0125F.1_g058740 Hydrangea macrophylla HOM05D000921 ORTHO05D004782 7.1e-15 87.8 63 68.3
Nn8g40360 Nelumbo nucifera HOM05D000921 ORTHO05D004782 7.1e-15 87.8 76 52.6
Pp3c8_11180 Physcomitrium patens HOM05D000921 ORTHO05D002852 1.6e-14 86.7 511 22.5
Sc07g0005290 Simmondsia chinensis HOM05D000921 ORTHO05D004782 4.6e-14 85.1 239 32.6
Cpa.g.sc474.1 Carica papaya HOM05D000921 ORTHO05D004782 6.0e-14 84.7 73 57.5
Nn1g04217 Nelumbo nucifera HOM05D001236 ORTHO05D001090 6.0e-14 84.7 72 55.6
Gohir.A08G128400 Gossypium hirsutum HOM05D000921 ORTHO05D002852 6.6e-13 81.3 240 26.2
CSS0006749 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004782 1.5e-12 80.1 149 35.6
DCAR_006882 Daucus carota HOM05D000921 ORTHO05D002852 3.6e-11 75.5 241 24.9
Lsat_1_v5_gn_7_57640 Lactuca sativa HOM05D000783 ORTHO05D015970 3.1e-10 72.4 109 38.5
Zm00001eb273760 Zea mays HOM05D000921 ORTHO05D004782 7.6e-09 67.8 60 53.3
AagrBONN_evm.TU.Sc2ySwM_117.1900 Anthoceros agrestis HOM05D000921 ORTHO05D004153 3.8e-08 65.5 366 21.9
CSS0044468 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004782 3.5e-06 58.9 43 67.4


User provided reference genes

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