Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002364g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 1.2e-77 295.4 203 100.0
Nitab4.5_0000574g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 9.8e-75 285.8 203 98.0
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 6.4e-66 256.5 203 75.4
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 2.0e-64 251.5 202 84.2
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 3.0e-63 247.7 200 86.0
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 3.9e-63 247.3 199 85.4
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 2.5e-62 244.6 203 88.2
Peaxi162Scf00370g00062 Petunia axillaris HOM05D003210 ORTHO05D000001 3.1e-60 237.7 201 81.1
Nitab4.5_0005257g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.5e-56 224.2 196 81.1
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 1.7e-39 168.7 196 67.3
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 5.1e-39 167.2 188 74.5
CSS0000965 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 7.3e-38 163.3 206 67.0
Cpa.g.sc10.84 Carica papaya HOM05D003210 ORTHO05D000001 3.6e-37 161.0 194 60.8
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 5.3e-36 157.1 197 66.0
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 1.5e-35 155.6 183 44.8
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 1.5e-35 155.6 192 42.7
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 1.5e-35 155.6 187 44.9
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.0e-35 155.2 183 44.8
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 2.6e-35 154.8 192 42.7
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 2.6e-35 154.8 193 65.8
Nitab4.5_0002165g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 2.9e-34 151.4 141 90.8
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 1.1e-33 149.4 192 56.8
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 1.1e-33 149.4 197 64.0
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 4.2e-33 147.5 193 57.0
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 9.3e-33 146.4 189 65.1
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 9.3e-33 146.4 191 65.4
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.6e-32 145.6 184 39.7
FAN28G0230 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.7e-32 144.8 184 39.1
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 6.0e-32 143.7 189 55.0
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 3.0e-31 141.4 190 62.1
SalBow3G1735 Salvia bowleyana HOM05D003210 ORTHO05D000001 3.0e-31 141.4 186 67.2
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 5.1e-31 140.6 184 38.6
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.1e-31 140.6 184 38.6
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 5.1e-31 140.6 179 68.7
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 8.7e-31 139.8 179 68.2
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 7.4e-30 136.7 191 36.6
Phvul.002G145400 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 9.6e-30 136.3 195 57.4
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 3.6e-29 134.4 190 62.6
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 3.6e-29 134.4 184 36.4
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 6.2e-29 133.7 195 36.4
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 2.4e-28 131.7 191 36.1
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 3.1e-28 131.3 183 65.0
FAN20G1808 Fragaria x ananassa HOM05D003210 ORTHO05D000001 3.1e-28 131.3 190 36.3
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 5.3e-28 130.6 183 54.6
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 1.2e-27 129.4 202 35.6
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.2e-27 129.4 202 35.6
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 1.2e-27 129.4 185 57.3
MD11G1188000 Malus domestica HOM05D003210 ORTHO05D000001 2.6e-27 128.3 194 48.5
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 2.6e-27 128.3 188 37.8
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 5.8e-27 127.1 182 36.3
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 5.8e-27 127.1 180 44.4
FAN26G0660 Fragaria x ananassa HOM05D000020 ORTHO05D000001 1.7e-26 125.6 160 53.8
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 1.9e-25 122.1 189 56.1
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 1.9e-25 122.1 183 63.4
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 7.9e-24 116.7 179 59.8
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 2.5e-22 111.7 197 54.8
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 5.6e-22 110.5 149 67.1
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 5.6e-22 110.5 160 60.6
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 2.1e-21 108.6 72 66.7
Oeu040066.1 Olea europaea HOM05D003210 ORTHO05D000001 2.1e-21 108.6 177 59.3
AL7G34260 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 1.4e-20 105.9 175 54.3
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 1.8e-20 105.5 187 30.5
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 1.2e-19 102.8 174 33.3
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 1.5e-19 102.4 148 33.8
Glyma.01G021450 Glycine max HOM05D003210 ORTHO05D000001 1.5e-19 102.4 158 56.3
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 1.5e-19 102.4 187 29.4
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 5.8e-19 100.5 187 29.4
Oeu017112.4 Olea europaea HOM05D000167 ORTHO05D000465 1.7e-18 99.0 171 41.5
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 4.2e-17 94.4 178 56.7
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 5.5e-17 94.0 196 50.5
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 2.1e-16 92.0 174 46.0
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 3.5e-16 91.3 174 45.4
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 7.9e-16 90.1 174 27.6
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 7.9e-16 90.1 174 27.6
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 7.9e-16 90.1 174 27.6
Dinv34734 Davidia involucrata HOM05D003210 ORTHO05D000001 6.7e-15 87.0 58 58.6
AL2G37540 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 1.1e-14 86.3 81 45.7
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 2.5e-14 85.1 179 58.1
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 2.8e-13 81.6 174 27.6
Os02g0582300 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 4.8e-13 80.9 178 27.5
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 1.1e-12 79.7 61 59.0
PGSC0003DMG400012917 Solanum tuberosum HOM05D003210 ORTHO05D000001 3.1e-12 78.2 60 63.3
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 5.3e-12 77.4 178 25.8
Zm00001eb183350 Zea mays HOM05D003210 ORTHO05D000001 5.3e-12 77.4 181 37.0
AL3G14030 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 9.0e-12 76.6 195 45.6
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 9.0e-12 76.6 170 35.9
Zm00001eb037970 Zea mays HOM05D003210 ORTHO05D000001 1.2e-11 76.3 190 43.7
Ciclev10014182m.g Citrus clementina HOM05D003210 ORTHO05D000001 2.6e-11 75.1 178 45.5
MBI16_g31256_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 2.6e-11 75.1 65 53.8
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.6e-11 75.1 66 51.5
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 2.6e-11 75.1 59 50.8
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 3.4e-11 74.7 166 27.1
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 3.4e-11 74.7 166 27.1
CSS0019582 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 5.9e-11 73.9 178 43.3
CSS0039883 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 5.9e-11 73.9 178 42.1
CiPaw.12G072400 Carya illinoinensis HOM05D003210 ORTHO05D000001 7.6e-11 73.6 178 51.1
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 1.7e-10 72.4 133 45.1
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 1.7e-10 72.4 56 51.8
Migut.M00034 Erythranthe guttata HOM05D003210 ORTHO05D000001 2.2e-10 72.0 178 51.7
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 3.8e-10 71.2 168 42.3
vmacro18279 Vaccinium macrocarpon HOM05D003210 ORTHO05D008377 3.8e-10 71.2 59 49.2
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 5.0e-10 70.9 174 50.0
Sed0013166 Sechium edule HOM05D003210 ORTHO05D000001 5.0e-10 70.9 173 50.3
Rhsim05G0168300 Rhododendron simsii HOM05D003210 ORTHO05D000001 1.9e-09 68.9 56 50.0
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 1.9e-09 68.9 178 50.0
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 2.5e-09 68.6 194 50.0
MD09G1122300 Malus domestica HOM05D003210 ORTHO05D000001 2.5e-09 68.6 171 52.6
QL04p021900 Quercus lobata HOM05D003210 ORTHO05D000001 2.5e-09 68.6 178 51.1
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 3.2e-09 68.2 193 48.7
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 4.2e-09 67.8 55 49.1
Sc16g0000610 Simmondsia chinensis HOM05D003210 ORTHO05D000001 4.2e-09 67.8 64 39.1
Peaxi162Scf00776g00227 Petunia axillaris HOM05D003210 ORTHO05D000001 5.5e-09 67.4 176 51.7
Dinv24763 Davidia involucrata HOM05D003210 ORTHO05D000001 7.2e-09 67.0 178 50.0
ECA236G0103 Erigeron canadensis HOM05D003210 ORTHO05D000001 7.2e-09 67.0 48 58.3
Haze_07989 Corylus avellana HOM05D003210 ORTHO05D000001 9.3e-09 66.6 174 50.0
MELO3C024111.2 Cucumis melo HOM05D003210 ORTHO05D000001 1.2e-08 66.2 178 50.6
CsaV3_7G023730 Cucumis sativus L. HOM05D003210 ORTHO05D000001 1.2e-08 66.2 176 48.9
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 1.2e-08 66.2 53 50.9
THA.LOC104798889 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 1.2e-08 66.2 184 47.3
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 1.2e-08 66.2 49 53.1
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 1.6e-08 65.9 174 49.4
PSO541G2059 Papaver somniferum HOM05D003210 ORTHO05D000001 2.1e-08 65.5 62 48.4
SGA_v2.0_scaffold181G39678 Striga asiatica HOM05D003210 ORTHO05D000001 2.1e-08 65.5 178 47.2
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 2.7e-08 65.1 52 51.9
MSTRG.6643 Avicennia marina HOM05D003210 ORTHO05D000001 2.7e-08 65.1 178 49.4
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 2.7e-08 65.1 53 49.1
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 3.6e-08 64.7 52 50.0
Cfa012658 Carpinus fangiana HOM05D003210 ORTHO05D000001 4.6e-08 64.3 174 50.0
DCAR_012908 Daucus carota HOM05D003210 ORTHO05D000001 6.1e-08 63.9 178 47.8
DCAR_012925 Daucus carota HOM05D003210 ORTHO05D000001 6.1e-08 63.9 178 47.8
Nitab4.5_0000441g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 7.9e-08 63.5 178 51.1
FAN23G1801 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.0e-07 63.2 54 50.0
TPR.G36733 Trifolium pratense HOM05D003210 ORTHO05D000001 1.0e-07 63.2 62 43.5
Ah.03g139830 Amaranthus hybridus HOM05D003210 ORTHO05D000001 1.3e-07 62.8 60 45.0
Cc04_g11530 Coffea canephora HOM05D003210 ORTHO05D000001 1.3e-07 62.8 180 45.0
SHI10143 Sapria himalayana HOM05D003210 ORTHO05D000001 1.8e-07 62.4 167 51.5
HPP92_001177 Vanilla planifolia HOM05D003210 ORTHO05D000001 2.3e-07 62.0 52 50.0
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 3.9e-07 61.2 56 44.6
PGSC0003DMG400006128 Solanum tuberosum HOM05D003210 ORTHO05D000001 3.9e-07 61.2 176 51.7
Atru.chr6.3361 Acer truncatum HOM05D003210 ORTHO05D000001 5.1e-07 60.8 178 41.6
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 5.1e-07 60.8 54 50.0
Lj2g0010731 Lotus japonicus HOM05D003210 ORTHO05D000001 6.7e-07 60.5 61 41.0
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 6.7e-07 60.5 60 41.7
FAN02G2842 Fragaria x ananassa HOM05D003210 ORTHO05D000001 8.7e-07 60.1 165 53.3
PGR142G4479 Punica granatum HOM05D003210 ORTHO05D000001 8.7e-07 60.1 176 48.9
arahy.Tifrunner.gnm1.ann1.PFI7NN Arachis hypogaea HOM05D003210 ORTHO05D000001 1.5e-06 59.3 62 43.5
arahy.Tifrunner.gnm1.ann1.SQ2KUV Arachis hypogaea HOM05D003210 ORTHO05D000001 1.5e-06 59.3 62 43.5
MELO3C013188.2 Cucumis melo HOM05D003210 ORTHO05D000001 1.9e-06 58.9 174 48.3
Sopen07g024250 Solanum pennellii HOM05D003210 ORTHO05D000001 2.5e-06 58.5 199 47.7
Os08g0300700 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 4.3e-06 57.8 169 47.3
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 7.4e-06 57.0 64 45.3


User provided reference genes

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