Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002291g0010 Nicotiana tabacum HOM05D005453 ORTHO05D006520 8.7e-304 1046.2 537 100.0
Nitab4.5_0002382g0040 Nicotiana tabacum HOM05D005453 ORTHO05D006520 9.1e-261 903.3 535 89.0
Peaxi162Scf00026g02226 Petunia axillaris HOM05D005453 ORTHO05D006520 5.1e-195 684.9 578 67.5
PGSC0003DMG400026781 Solanum tuberosum HOM05D005453 ORTHO05D006520 5.6e-194 681.4 487 77.6
CAN.G827.6 Capsicum annuum HOM05D005453 ORTHO05D006520 1.0e-187 660.6 542 69.4
Sopen01g006070 Solanum pennellii HOM05D005453 ORTHO05D006520 1.2e-180 637.1 491 73.3
Nitab4.5_0000679g0110 Nicotiana tabacum HOM05D005453 ORTHO05D006520 1.6e-156 557.0 536 59.7
Nitab4.5_0002969g0050 Nicotiana tabacum HOM05D005453 ORTHO05D006520 1.9e-149 533.5 538 58.4
PGSC0003DMG400017617 Solanum tuberosum HOM05D005453 ORTHO05D006520 2.2e-142 510.0 539 55.8
Solyc05g006930.3 Solanum lycopersicum HOM05D005453 ORTHO05D006520 2.6e-138 496.5 542 55.7
Peaxi162Scf00209g00610 Petunia axillaris HOM05D005453 ORTHO05D006520 1.7e-137 493.8 550 54.0
CAN.G27.11 Capsicum annuum HOM05D005453 ORTHO05D006520 1.1e-136 491.1 556 53.2
Solyc01g010460.4 Solanum lycopersicum HOM05D005453 ORTHO05D006520 4.2e-133 479.2 391 70.8
Sopen05g002890 Solanum pennellii HOM05D005453 ORTHO05D006520 5.5e-133 478.8 485 58.6
MSTRG.666 Avicennia marina HOM05D005453 ORTHO05D006520 1.0e-110 404.8 553 47.6
Actinidia19854 Actinidia chinensis HOM05D005453 ORTHO05D006520 1.1e-109 401.4 570 46.7
Hma1.2p1_0265F.1_g106550 Hydrangea macrophylla HOM05D005453 ORTHO05D006520 2.3e-102 377.1 490 50.4
Dinv34193 Davidia involucrata HOM05D005453 ORTHO05D006520 1.1e-101 374.8 506 48.6
SGA_v2.0_scaffold163G38065 Striga asiatica HOM05D005453 ORTHO05D006520 1.5e-101 374.4 550 44.7
Oeu057176.2 Olea europaea HOM05D005453 ORTHO05D006520 2.5e-101 373.6 431 51.7
Oeu011701.1 Olea europaea HOM05D005453 ORTHO05D006520 3.3e-101 373.2 490 47.3
DCAR_031056 Daucus carota HOM05D005453 ORTHO05D006520 5.6e-101 372.5 497 46.5
Ciclev10031079m.g Citrus clementina HOM05D005453 ORTHO05D006520 1.7e-97 360.9 496 47.6
Cfa009044 Carpinus fangiana HOM05D005453 ORTHO05D006520 2.9e-97 360.1 578 43.4
Rhsim12G0129300 Rhododendron simsii HOM05D005453 ORTHO05D006520 1.4e-96 357.8 566 45.2
Haze_12074 Corylus avellana HOM05D005453 ORTHO05D006520 2.0e-95 354.0 578 42.6
QL03p065960 Quercus lobata HOM05D005453 ORTHO05D006520 3.3e-93 346.7 522 45.4
Migut.L01350 Erythranthe guttata HOM05D005453 ORTHO05D006520 4.3e-93 346.3 586 42.5
CSS0029199 Camellia sinensis var. sinensis HOM05D005453 ORTHO05D006520 8.1e-92 342.0 653 38.6
Sc11g0001640 Simmondsia chinensis HOM05D005453 ORTHO05D006520 2.3e-91 340.5 543 43.6
Manes.01G191800 Manihot esculenta HOM05D005453 ORTHO05D006520 4.0e-91 339.7 576 42.7
COL.COLO4_34957 Corchorus olitorius HOM05D005453 ORTHO05D006520 5.2e-91 339.3 549 42.1
Cc11_g13580 Coffea canephora HOM05D005453 ORTHO05D006520 3.4e-90 336.7 396 52.8
Thecc.02G232200 Theobroma cacao HOM05D005453 ORTHO05D006520 2.9e-89 333.6 561 41.4
COL.COLO4_36184 Corchorus olitorius HOM05D005453 ORTHO05D006520 5.4e-88 329.3 511 44.6
Prupe.1G266900 Prunus persica HOM05D005453 ORTHO05D006520 1.6e-87 327.8 566 41.0
CiPaw.05G140600 Carya illinoinensis HOM05D005453 ORTHO05D006520 3.5e-87 326.6 470 45.3
Gorai.005G189700 Gossypium raimondii HOM05D005453 ORTHO05D006520 4.6e-87 326.2 551 41.9
Potri.010G034600 Populus trichocarpa HOM05D005453 ORTHO05D006520 1.0e-86 325.1 583 39.5
CANSAT64G2233 Cannabis sativa HOM05D005453 ORTHO05D006520 3.0e-86 323.6 563 40.9
Gohir.D02G169300 Gossypium hirsutum HOM05D005453 ORTHO05D006520 1.9e-85 320.9 551 42.3
Duzib268G1123 Durio zibethinus HOM05D005453 ORTHO05D006520 1.2e-84 318.2 553 41.6
MD13G1079900 Malus domestica HOM05D005453 ORTHO05D006520 1.2e-84 318.2 560 40.5
PGR102G2554 Punica granatum HOM05D005453 ORTHO05D006520 1.2e-84 318.2 563 41.9
AUR62026269 Chenopodium quinoa HOM05D005453 ORTHO05D006520 1.6e-84 317.8 569 41.3
Lalb_Chr10g0097931 Lupinus albus HOM05D005453 ORTHO05D006520 3.6e-84 316.6 549 41.0
EL10Ac6g13139 Beta vulgaris HOM05D005453 ORTHO05D006520 6.2e-84 315.8 566 40.8
ClCG05G024670 Citrullus lanatus HOM05D005453 ORTHO05D006520 5.2e-83 312.8 477 45.1
Nn4g23024 Nelumbo nucifera HOM05D005453 ORTHO05D006520 6.8e-83 312.4 565 40.5
AUR62026459 Chenopodium quinoa HOM05D005453 ORTHO05D006520 1.5e-82 311.2 567 39.7
SalBow2G2835 Salvia bowleyana HOM05D005453 ORTHO05D006520 4.4e-82 309.7 554 40.6
Eucgr.B03405 Eucalyptus grandis HOM05D005453 ORTHO05D006520 5.8e-82 309.3 470 44.7
Potri.008G194300 Populus trichocarpa HOM05D005453 ORTHO05D006520 2.2e-81 307.4 483 42.9
TWI75G0114 Tripterygium wilfordii HOM05D005453 ORTHO05D006520 2.9e-81 307.0 541 41.6
Sabra10G0030200 Salix brachista HOM05D005453 ORTHO05D006520 3.8e-81 306.6 589 38.4
vmacro16321 Vaccinium macrocarpon HOM05D005453 ORTHO05D006520 6.4e-81 305.8 456 46.3
Glyma.02G022500 Glycine max HOM05D005453 ORTHO05D006520 1.4e-80 304.7 554 40.3
MBI05_g12576_MAGBIO Magnolia biondii HOM05D005453 ORTHO05D006520 7.1e-80 302.4 491 43.2
RcHm_v2.0_Chr4g0440791 Rosa chinensis HOM05D005453 ORTHO05D006520 9.2e-80 302.0 483 44.5
FAN22G2419 Fragaria x ananassa HOM05D005453 ORTHO05D006520 2.7e-79 300.4 515 43.1
FvH4_4g32100 Fragaria vesca HOM05D005453 ORTHO05D006520 6.0e-79 299.3 489 44.0
CsaV3_5G032260 Cucumis sativus L. HOM05D005453 ORTHO05D006520 1.3e-78 298.1 481 42.4
FAN12G1353 Fragaria x ananassa HOM05D005453 ORTHO05D006520 1.3e-78 298.1 492 43.5
Glyma.01G041500 Glycine max HOM05D005453 ORTHO05D006520 3.9e-78 296.6 556 40.3
Hund05918 Selenicereus undatus HOM05D005453 ORTHO05D006520 4.3e-77 293.1 561 38.7
MELO3C012058.2 Cucumis melo HOM05D005453 ORTHO05D006520 7.3e-77 292.4 554 40.3
Hund25276 Selenicereus undatus HOM05D005453 ORTHO05D006520 3.6e-76 290.0 609 35.8
VMungo1215G2350 Vigna mungo HOM05D005453 ORTHO05D006520 8.1e-76 288.9 515 40.4
Lsat_1_v5_gn_8_53620 Lactuca sativa HOM05D005453 ORTHO05D006520 1.4e-75 288.1 455 42.9
TPR.G29465 Trifolium pratense HOM05D005453 ORTHO05D006520 1.4e-75 288.1 560 39.8
Phvul.002G067500 Phaseolus vulgaris HOM05D005453 ORTHO05D006520 6.9e-75 285.8 517 41.0
Ca_07371_v3 Cicer arietinum L. HOM05D005453 ORTHO05D006520 2.0e-74 284.3 573 38.7
THA.LOC104822093 Tarenaya hassleriana HOM05D005453 ORTHO05D006520 7.6e-74 282.3 519 41.0
Duzib248G1267 Durio zibethinus HOM05D005453 ORTHO05D006520 9.9e-74 282.0 500 40.2
AT1G27070 Arabidopsis thaliana HOM05D005453 ORTHO05D006520 1.3e-73 281.6 475 42.3
BcaB07g32384 Brassica carinata HOM05D005453 ORTHO05D006520 2.9e-73 280.4 478 40.4
Carub.0001s2390 Capsella rubella HOM05D005453 ORTHO05D006520 3.8e-73 280.0 519 41.6
PSO017G4002 Papaver somniferum HOM05D005453 ORTHO05D006520 3.8e-73 280.0 544 37.7
Sp1g21710 Schrenkiella parvula HOM05D005453 ORTHO05D006520 3.2e-72 276.9 474 41.4
Nn3g17115 Nelumbo nucifera HOM05D005453 ORTHO05D006520 4.2e-72 276.6 500 38.8
ECA234G1124 Erigeron canadensis HOM05D005453 ORTHO05D006520 5.4e-72 276.2 525 38.9
Medtr5g038210 Medicago truncatula HOM05D005453 ORTHO05D006520 1.6e-71 274.6 485 40.8
arahy.Tifrunner.gnm1.ann1.62035P Arachis hypogaea HOM05D005453 ORTHO05D006520 2.7e-71 273.9 550 38.9
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 4.6e-71 273.1 473 40.4
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 4.6e-71 273.1 473 40.4
Gohir.A03G146000 Gossypium hirsutum HOM05D005453 ORTHO05D006520 7.8e-71 272.3 495 40.0
arahy.Tifrunner.gnm1.ann1.7H81I7 Arachis hypogaea HOM05D005453 ORTHO05D006520 1.7e-70 271.2 550 37.6
PSO478G0523 Papaver somniferum HOM05D005453 ORTHO05D006520 5.1e-70 269.6 480 40.8
MD16G1079800 Malus domestica HOM05D005453 ORTHO05D006520 1.5e-69 268.1 504 40.5
Sabra08G0147800 Salix brachista HOM05D005453 ORTHO05D006520 1.9e-69 267.7 660 33.9
BolC5t31089H Brassica oleracea HOM05D005453 ORTHO05D006520 3.3e-69 266.9 470 40.2
Aqoxy3G03253 Aquilegia oxysepala HOM05D005453 ORTHO05D006520 9.6e-69 265.4 521 38.0
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 1.3e-68 265.0 477 40.0
GSVIVG01020082001 Vitis vinifera HOM05D005453 ORTHO05D006520 1.3e-68 265.0 364 47.3
arahy.Tifrunner.gnm1.ann1.C864RN Arachis hypogaea HOM05D005453 ORTHO05D006520 1.6e-68 264.6 549 37.3
Lj2g0004726 Lotus japonicus HOM05D005453 ORTHO05D006520 1.6e-68 264.6 479 39.2
Sed0006777 Sechium edule HOM05D005453 ORTHO05D006520 4.8e-68 263.1 466 39.9
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 1.8e-67 261.2 475 39.4
Aa31LG7G8080 Aethionema arabicum HOM05D005453 ORTHO05D006520 1.7e-65 254.6 452 39.4
TAR374G0997 Trochodendron aralioides HOM05D005453 ORTHO05D006520 2.4e-64 250.8 548 37.8
HanXRQChr08g0209161 Helianthus annuus HOM05D005453 ORTHO05D006520 5.4e-64 249.6 478 38.1
Thhalv10007340m.g Eutrema salsugineum HOM05D005453 ORTHO05D006520 1.2e-63 248.4 477 37.3
Sed0004157 Sechium edule HOM05D005453 ORTHO05D006520 1.8e-62 244.6 423 42.3
unitig_22.g6530 Utricularia gibba HOM05D005453 ORTHO05D006520 2.3e-62 244.2 455 38.9
ATR0665G247 Amborella trichopoda HOM05D005453 ORTHO05D006520 9.0e-59 232.3 530 34.0
BcaC05g26346 Brassica carinata HOM05D005453 ORTHO05D006520 5.5e-56 223.0 344 43.6
Actinidia08209 Actinidia chinensis HOM05D005453 ORTHO05D006520 1.3e-54 218.4 399 38.6
Os03g0686900 Oryza sativa ssp. japonica HOM05D005453 ORTHO05D006520 5.1e-54 216.5 500 35.4
TAR622G1188 Trochodendron aralioides HOM05D005453 ORTHO05D006520 3.3e-53 213.8 379 40.6
AL1G38420 Arabidopsis lyrata HOM05D005453 ORTHO05D006520 9.6e-53 212.2 478 36.6
MSTRG.7832 Avicennia marina HOM05D005453 ORTHO05D006520 9.6e-53 212.2 188 63.3
CDE06G1042 Ceratophyllum demersum HOM05D005453 ORTHO05D006520 2.0e-50 204.5 464 36.0
Zm00001eb217200 Zea mays HOM05D005453 ORTHO05D006520 3.8e-49 200.3 485 33.8
CARHR024830 Cardamine hirsuta HOM05D005453 ORTHO05D006520 4.2e-48 196.8 250 44.8
Psat2g125480 Pisum sativum HOM05D005453 ORTHO05D006520 4.2e-48 196.8 449 35.9
Atru.chr11.1866 Acer truncatum HOM05D005453 ORTHO05D006520 4.6e-47 193.4 426 35.7
Oeu026503.1 Olea europaea HOM05D005453 ORTHO05D006520 5.7e-45 186.4 262 45.0
Solyc01g010470.2 Solanum lycopersicum HOM05D005453 ORTHO05D006520 1.8e-43 181.4 159 64.8
SEGI_23512 Sequoiadendron giganteum HOM05D005453 ORTHO05D006520 2.9e-41 174.1 507 31.8
FAN07G1475 Fragaria x ananassa HOM05D005453 ORTHO05D006520 7.9e-39 166.0 306 40.8
Atru.chr11.1865 Acer truncatum HOM05D005453 ORTHO05D006520 7.4e-37 159.5 132 65.9
Zm00001eb053230 Zea mays HOM05D005453 ORTHO05D006520 8.2e-36 156.0 427 33.0
HPP92_018829 Vanilla planifolia HOM05D005453 ORTHO05D006520 1.8e-35 154.8 491 31.6
Sc04g0008480 Simmondsia chinensis HOM05D005453 ORTHO05D006520 1.0e-33 149.1 451 30.6
Cpa.g.c42295 Carica papaya HOM05D005453 ORTHO05D006520 2.5e-32 144.4 95 76.8
Mapoly0020s0141 Marchantia polymorpha HOM05D005453 ORTHO05D006520 1.5e-21 108.6 160 41.2
CBR_g23347 Chara braunii HOM05D005453 ORTHO05D006520 3.3e-21 107.5 189 34.9
FAN07G0689 Fragaria x ananassa HOM05D005453 ORTHO05D006520 5.5e-16 90.1 213 37.6
Lalb_Chr04g0256401 Lupinus albus HOM05D005453 ORTHO05D006520 4.7e-15 87.0 247 32.8
SMO353G0350 Selaginella moellendorffii HOM05D005453 ORTHO05D006520 1.4e-14 85.5 455 24.6
HanXRQChr03g0092801 Helianthus annuus HOM05D005453 ORTHO05D006520 2.0e-13 81.6 133 40.6
AagrBONN_evm.TU.Sc2ySwM_117.2704 Anthoceros agrestis HOM05D005453 ORTHO05D006520 9.7e-13 79.3 140 34.3
HanXRQChr03g0092811 Helianthus annuus HOM05D005453 ORTHO05D006520 1.4e-11 75.5 97 45.4
AUR62041893 Chenopodium quinoa HOM05D008659 ORTHO05D010848 4.1e-11 73.9 177 36.7
Cpa.g.sc1308.1 Carica papaya HOM05D005453 ORTHO05D006520 1.2e-10 72.4 205 31.2
Pp3c15_1130 Physcomitrium patens HOM05D007148 ORTHO05D009047 3.5e-10 70.9 167 29.9
CDE06G1945 Ceratophyllum demersum HOM05D005453 ORTHO05D006520 4.5e-10 70.5 265 30.2
Ciclev10012080m.g Citrus clementina HOM05D007148 ORTHO05D009047 4.5e-10 70.5 143 32.9
Actinidia08210 Actinidia chinensis HOM05D005453 ORTHO05D006520 7.7e-10 69.7 72 55.6
AagrBONN_evm.TU.Sc2ySwM_362.2026 Anthoceros agrestis HOM05D007148 ORTHO05D009047 1.3e-09 68.9 174 31.0
DCAR_014515 Daucus carota HOM05D007148 ORTHO05D009047 1.9e-08 65.1 165 29.1
Oeu001597.1 Olea europaea HOM05D005453 ORTHO05D006520 1.9e-08 65.1 33 84.8
Ah.08g211560 Amaranthus hybridus HOM05D007148 ORTHO05D009047 2.5e-08 64.7 114 36.0
Glyma.10G054600 Glycine max HOM05D007148 ORTHO05D009047 2.5e-08 64.7 143 31.5
CiPaw.09G171600 Carya illinoinensis HOM05D007148 ORTHO05D009047 3.2e-08 64.3 168 28.6
HanXRQChr13g0400991 Helianthus annuus HOM05D007148 ORTHO05D009047 3.2e-08 64.3 170 25.9
PSO339G4391 Papaver somniferum HOM05D007148 ORTHO05D009047 7.2e-08 63.2 146 30.8
Gohir.D01G204200 Gossypium hirsutum HOM05D007148 ORTHO05D009047 9.4e-08 62.8 143 28.0
TPR.G23943 Trifolium pratense HOM05D005453 ORTHO05D006520 9.4e-08 62.8 49 59.2
TAR633G2546 Trochodendron aralioides HOM05D007148 ORTHO05D009047 9.4e-08 62.8 111 34.2
Lsat_1_v5_gn_6_24961 Lactuca sativa HOM05D007148 ORTHO05D009047 1.2e-07 62.4 155 27.7
EL10Ac2g03151 Beta vulgaris HOM05D006597 ORTHO05D008141 1.6e-07 62.0 170 29.4
Hma1.2p1_2076F.1_g313310 Hydrangea macrophylla HOM05D007148 ORTHO05D009047 1.6e-07 62.0 143 32.2
SalBow7G0897 Salvia bowleyana HOM05D005453 ORTHO05D006520 1.6e-07 62.0 61 47.5
Cpa.g.c46071 Carica papaya HOM05D005453 ORTHO05D006520 2.1e-07 61.6 100 42.0
Gorai.002G246600 Gossypium raimondii HOM05D007148 ORTHO05D009047 2.7e-07 61.2 143 27.3
PSO801G0196 Papaver somniferum HOM05D007148 ORTHO05D009047 2.7e-07 61.2 141 30.5
FAN02G0401 Fragaria x ananassa HOM05D007148 ORTHO05D009047 4.7e-07 60.5 166 30.1
SGA_v2.0_scaffold13G06385 Striga asiatica HOM05D006597 ORTHO05D008141 4.7e-07 60.5 191 28.8
CANSAT80G2677 Cannabis sativa HOM05D007148 ORTHO05D009047 6.1e-07 60.1 246 24.8
Sc14g0006400 Simmondsia chinensis HOM05D006597 ORTHO05D008141 6.1e-07 60.1 104 37.5
vmacro21820 Vaccinium macrocarpon HOM05D005453 ORTHO05D006520 8.0e-07 59.7 140 35.0
Hund20337 Selenicereus undatus HOM05D007148 ORTHO05D009047 1.0e-06 59.3 459 23.7
COL.COLO4_00245 Corchorus olitorius HOM05D006597 ORTHO05D008141 1.4e-06 58.9 161 29.8
HanXRQChr09g0262181 Helianthus annuus HOM05D006597 ORTHO05D008141 1.4e-06 58.9 119 33.6
Sed0015836 Sechium edule HOM05D007148 ORTHO05D009047 1.4e-06 58.9 111 34.2
MD04G1092300 Malus domestica HOM05D007148 ORTHO05D009047 1.8e-06 58.5 120 33.3
arahy.Tifrunner.gnm1.ann1.IRYX6E Arachis hypogaea HOM05D007148 ORTHO05D009047 2.3e-06 58.2 143 28.0
arahy.Tifrunner.gnm1.ann1.J3RTVJ Arachis hypogaea HOM05D007148 ORTHO05D009047 2.3e-06 58.2 143 28.0
Sabra17G0105600 Salix brachista HOM05D006597 ORTHO05D008141 4.0e-06 57.4 104 36.5
Aa31LG1G21730 Aethionema arabicum HOM05D007148 ORTHO05D009047 5.2e-06 57.0 148 27.0
GSVIVG01033649001 Vitis vinifera HOM05D007148 ORTHO05D009047 6.8e-06 56.6 114 30.7
Prupe.7G052900 Prunus persica HOM05D006597 ORTHO05D008141 8.8e-06 56.2 271 24.0
RcHm_v2.0_Chr3g0470391 Rosa chinensis HOM05D007148 ORTHO05D009047 8.8e-06 56.2 168 28.6


User provided reference genes

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