Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.2e-64 250.0 161 100.0
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 5.3e-55 218.0 161 78.9
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 3.8e-53 211.8 143 80.4
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 3.9e-50 201.8 146 93.8
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 3.9e-50 201.8 167 76.0
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 2.9e-45 185.7 167 73.1
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 2.9e-45 185.7 167 73.1
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 1.2e-43 180.3 143 65.7
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 2.7e-43 179.1 141 66.7
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 3.5e-43 178.7 162 62.3
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 8.7e-42 174.1 141 61.0
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 1.9e-41 172.9 124 73.4
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 1.3e-40 170.2 136 65.4
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 1.6e-40 169.9 142 63.4
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 8.2e-40 167.5 135 61.5
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 1.1e-39 167.2 161 55.3
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 1.1e-39 167.2 138 60.9
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.4e-39 166.8 138 61.6
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 1.4e-39 166.8 146 58.2
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 1.8e-39 166.4 161 59.6
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 4.5e-38 161.8 125 64.8
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 7.6e-38 161.0 136 59.6
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 7.6e-38 161.0 141 61.7
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 1.7e-37 159.8 124 64.5
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 1.7e-37 159.8 145 59.3
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 1.7e-37 159.8 145 59.3
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 3.8e-37 158.7 141 58.9
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 3.8e-37 158.7 141 58.9
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 3.8e-37 158.7 162 59.3
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 3.8e-37 158.7 127 64.6
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 6.5e-37 157.9 137 59.9
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 2.5e-36 156.0 141 58.9
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 3.2e-36 155.6 162 54.3
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 4.2e-36 155.2 141 60.3
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 4.2e-36 155.2 141 56.0
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 4.2e-36 155.2 141 56.0
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 5.5e-36 154.8 158 53.8
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.6e-35 153.3 156 61.5
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 1.6e-35 153.3 136 58.1
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 2.7e-35 152.5 135 58.5
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 6.0e-35 151.4 165 52.7
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 1.3e-34 150.2 113 65.5
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.3e-34 150.2 160 59.4
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 2.3e-34 149.4 141 54.6
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 3.0e-34 149.1 114 63.2
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 3.9e-34 148.7 140 58.6
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 3.9e-34 148.7 124 60.5
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 3.9e-34 148.7 141 55.3
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 6.7e-34 147.9 161 58.4
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 6.7e-34 147.9 162 58.0
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.1e-33 147.1 136 58.1
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 1.1e-33 147.1 142 55.6
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.1e-33 147.1 162 59.9
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 1.1e-33 147.1 135 56.3
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 1.5e-33 146.7 123 62.6
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 1.5e-33 146.7 135 54.8
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 2.5e-33 146.0 123 61.8
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 3.3e-33 145.6 140 55.0
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 3.3e-33 145.6 141 53.9
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 3.3e-33 145.6 134 58.2
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 4.3e-33 145.2 161 59.6
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 5.7e-33 144.8 140 52.9
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 7.4e-33 144.4 123 61.0
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 7.4e-33 144.4 123 61.0
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 1.6e-32 143.3 119 65.5
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 2.2e-32 142.9 123 61.0
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 4.8e-32 141.7 141 51.8
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 4.8e-32 141.7 119 66.4
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 6.3e-32 141.4 139 55.4
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 6.3e-32 141.4 140 52.1
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 6.3e-32 141.4 139 54.7
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 1.1e-31 140.6 124 56.5
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 1.1e-31 140.6 124 56.5
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 1.1e-31 140.6 139 51.8
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 1.4e-31 140.2 156 57.7
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.4e-31 140.2 126 57.1
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 1.8e-31 139.8 122 59.8
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 2.4e-31 139.4 139 52.5
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 3.1e-31 139.0 140 50.7
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 3.1e-31 139.0 144 60.4
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 3.1e-31 139.0 141 51.1
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 4.1e-31 138.7 140 54.3
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 4.1e-31 138.7 141 51.8
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 4.1e-31 138.7 139 51.1
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 4.1e-31 138.7 141 52.5
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 4.1e-31 138.7 167 49.7
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 5.3e-31 138.3 142 51.4
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 5.3e-31 138.3 141 53.2
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 1.2e-30 137.1 140 54.3
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 1.2e-30 137.1 140 50.0
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 2.0e-30 136.3 133 55.6
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 2.0e-30 136.3 125 57.6
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 1.0e-29 134.0 118 58.5
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 1.0e-29 134.0 123 56.9
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 1.0e-29 134.0 123 56.9
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 1.0e-29 134.0 156 55.1
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 1.0e-29 134.0 156 55.1
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 1.0e-29 134.0 156 55.1
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 1.0e-29 134.0 156 55.1
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 1.0e-29 134.0 156 55.1
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 1.7e-29 133.3 156 55.1
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 2.9e-29 132.5 140 48.6
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 5.0e-29 131.7 141 51.8
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 6.5e-29 131.3 135 51.1
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 6.5e-29 131.3 161 46.0
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 6.5e-29 131.3 156 50.0
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 1.1e-28 130.6 164 45.7
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.9e-28 129.8 121 56.2
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.2e-28 128.6 138 52.9
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 4.2e-28 128.6 121 55.4
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 7.2e-28 127.9 171 52.6
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 7.2e-28 127.9 138 50.7
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.7e-27 125.9 138 52.2
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 7.9e-27 124.4 162 46.9
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 1.0e-26 124.0 100 64.0
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.3e-26 123.6 121 53.7
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 2.3e-26 122.9 166 44.6
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 3.3e-25 119.0 143 49.7
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 7.4e-25 117.9 124 53.2
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 1.3e-24 117.1 139 48.2
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.5e-22 110.2 126 50.8
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 7.7e-22 107.8 117 52.1
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 1.0e-21 107.5 121 48.8
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 1.7e-21 106.7 138 44.9
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.9e-20 103.2 125 46.4
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 1.0e-18 97.4 122 41.8
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.0e-18 97.4 119 58.8
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 2.0e-17 93.2 116 46.6
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 2.2e-16 89.7 111 47.7
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 1.0e-13 80.9 141 35.5
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 2.2e-13 79.7 125 38.4
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 1.9e-12 76.6 146 35.6
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 1.9e-12 76.6 95 47.4
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 9.4e-12 74.3 111 37.8
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 2.1e-11 73.2 48 68.8
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 3.6e-11 72.4 160 32.5
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 8.8e-10 67.8 92 44.6
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 1.1e-09 67.4 118 42.4
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.8e-08 62.8 97 40.2
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 1.1e-07 60.8 142 31.7
Duzib170G0487 Durio zibethinus HOM05D004872 ORTHO05D006050 4.5e-06 55.5 38 52.6


User provided reference genes

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