Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.7e-252 875.5 443 100.0
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 2.3e-249 865.1 443 98.4
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 2.6e-237 825.1 443 94.4
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 2.9e-236 821.6 444 94.4
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 8.3e-236 820.1 444 94.1
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 7.3e-232 807.0 444 93.5
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.7e-220 769.2 445 88.5
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 2.3e-209 732.3 443 82.8
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 2.1e-199 699.1 454 79.1
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 2.8e-199 698.7 444 81.1
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.5e-197 693.0 445 78.7
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 6.4e-196 687.6 424 81.4
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 8.4e-196 687.2 378 88.1
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 2.5e-195 685.6 447 78.7
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 3.2e-195 685.3 452 77.4
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 4.2e-195 684.9 399 84.2
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 9.3e-195 683.7 478 76.2
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 2.7e-194 682.2 415 81.4
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 4.6e-194 681.4 430 79.5
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 7.9e-194 680.6 442 78.5
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 1.3e-193 679.9 462 75.3
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 1.8e-193 679.5 440 77.3
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 2.3e-193 679.1 448 77.2
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 2.3e-193 679.1 424 80.0
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 3.9e-193 678.3 440 78.6
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 5.1e-193 677.9 438 77.6
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 5.1e-193 677.9 418 81.1
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 1.1e-192 676.8 409 82.4
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 1.1e-192 676.8 415 81.2
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 2.5e-192 675.6 449 77.1
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.3e-192 675.2 383 85.4
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 3.3e-192 675.2 388 84.0
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 4.3e-192 674.9 439 77.4
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 5.6e-192 674.5 444 77.5
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 7.4e-192 674.1 408 81.4
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 1.3e-191 673.3 425 79.5
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 1.3e-191 673.3 396 84.6
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 1.6e-191 672.9 403 82.9
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 2.1e-191 672.5 421 79.1
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 2.1e-191 672.5 439 77.4
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 2.1e-191 672.5 434 77.9
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 2.1e-191 672.5 442 77.8
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 2.8e-191 672.2 393 84.2
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 6.2e-191 671.0 412 82.0
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 6.2e-191 671.0 417 80.3
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 1.1e-190 670.2 463 74.5
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 2.4e-190 669.1 400 82.2
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 2.4e-190 669.1 449 75.7
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 3.1e-190 668.7 393 84.0
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 4.0e-190 668.3 417 79.9
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 5.3e-190 667.9 437 76.9
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.5e-189 666.4 403 82.4
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 1.5e-189 666.4 430 78.1
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 2.0e-189 666.0 443 76.3
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 2.0e-189 666.0 396 82.6
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 2.0e-189 666.0 414 79.5
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 3.4e-189 665.2 438 76.9
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 3.4e-189 665.2 423 80.1
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 4.5e-189 664.8 434 78.3
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 4.5e-189 664.8 447 75.4
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 7.6e-189 664.1 448 75.9
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 1.0e-188 663.7 372 86.8
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 1.0e-188 663.7 437 76.2
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 1.3e-188 663.3 400 81.5
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 1.3e-188 663.3 416 78.8
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 6.5e-188 661.0 405 81.7
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 6.5e-188 661.0 442 76.2
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 8.4e-188 660.6 443 75.8
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 8.4e-188 660.6 443 75.8
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 8.4e-188 660.6 386 83.7
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 8.4e-188 660.6 432 76.4
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.1e-187 660.2 402 81.6
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 1.1e-187 660.2 403 80.9
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 1.9e-187 659.4 442 76.2
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 1.9e-187 659.4 442 76.2
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 1.9e-187 659.4 444 75.9
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 1.9e-187 659.4 434 77.6
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.5e-187 659.1 432 76.9
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 3.2e-187 658.7 449 74.8
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 3.2e-187 658.7 423 78.5
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 3.2e-187 658.7 386 82.1
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 3.2e-187 658.7 437 76.2
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 4.2e-187 658.3 394 82.7
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 7.1e-187 657.5 413 79.9
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 9.3e-187 657.1 408 80.9
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 9.3e-187 657.1 400 81.0
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 2.1e-186 656.0 383 82.0
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 3.5e-186 655.2 441 75.5
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 3.0e-185 652.1 385 83.1
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 5.1e-185 651.4 397 81.6
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 1.1e-184 650.2 447 74.5
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.3e-184 648.7 378 84.1
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 1.3e-183 646.7 386 80.6
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 2.2e-183 646.0 396 81.8
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 1.5e-181 639.8 412 77.7
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.5e-181 638.3 368 84.5
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 7.7e-181 637.5 366 85.0
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 1.4e-179 633.3 382 80.9
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 4.6e-178 628.2 384 78.4
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 6.1e-178 627.9 384 78.4
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 2.0e-176 622.9 340 88.8
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 1.3e-172 610.1 438 69.6
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 4.2e-171 605.1 388 79.4
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 8.8e-169 597.4 328 88.1
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 2.2e-167 592.8 364 77.5
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 8.2e-167 590.9 416 69.7
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 3.1e-166 589.0 386 73.8
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 4.2e-163 578.6 448 69.2
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 4.1e-158 562.0 376 74.7
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 5.0e-156 555.1 399 68.7
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 1.5e-155 553.5 421 69.8
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 2.1e-154 549.7 397 69.8
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.7e-148 530.0 287 89.2
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 4.2e-147 525.4 393 67.2
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 1.3e-143 513.8 460 60.0
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 2.4e-142 509.6 389 62.7
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 7.2e-139 498.0 287 82.6
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 4.4e-136 488.8 376 68.4
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 1.8e-134 483.4 325 75.4
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 2.8e-130 469.5 293 80.2
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 6.8e-129 464.9 378 60.1
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.2e-120 437.6 290 72.4
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 1.3e-116 424.1 233 88.4
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 3.1e-113 412.9 449 53.9
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 6.4e-111 405.2 314 65.3
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.4e-96 356.3 224 75.0
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.4e-86 324.3 256 65.6
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 1.8e-81 307.4 243 63.8
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 3.5e-77 293.1 299 47.8
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 9.6e-75 285.0 161 87.0
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 1.6e-74 284.3 273 57.5
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 6.2e-74 282.3 246 59.8
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 1.1e-67 261.5 355 43.1
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 6.3e-58 229.2 211 61.6
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 9.1e-57 225.3 377 41.9
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 2.0e-51 207.6 177 66.7
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 7.2e-46 189.1 184 59.2
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.1e-43 181.8 113 77.0
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 5.5e-30 136.3 77 84.4
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.8e-28 129.0 83 73.5
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.8e-28 129.0 83 73.5
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 1.8e-25 121.3 129 52.7
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 1.8e-25 121.3 129 52.7
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.8e-21 107.5 67 76.1
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 1.8e-20 104.8 113 52.2
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 8.9e-20 102.4 81 59.3
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.4e-19 100.1 69 68.1
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 1.6e-08 65.1 37 75.7
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 6.0e-08 63.2 110 41.8


User provided reference genes

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