Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 2.0e-31 138.3 62 100.0
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 5.8e-10 67.0 54 63.0
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 7.5e-10 66.6 57 59.6
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 7.5e-10 66.6 58 56.9
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 1.3e-09 65.9 58 56.9
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 1.7e-09 65.5 54 63.0
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.7e-09 65.5 54 63.0
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.7e-09 65.5 54 63.0
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 1.7e-09 65.5 31 90.3
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 2.2e-09 65.1 58 55.2
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 2.2e-09 65.1 58 56.9
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 2.9e-09 64.7 29 96.6
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 3.7e-09 64.3 29 93.1
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 4.9e-09 63.9 29 93.1
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 4.9e-09 63.9 54 63.0
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 4.9e-09 63.9 29 93.1
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 6.4e-09 63.5 29 93.1
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 6.4e-09 63.5 29 93.1
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 8.3e-09 63.2 58 55.2
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 8.3e-09 63.2 29 93.1
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 8.3e-09 63.2 29 93.1
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 8.3e-09 63.2 29 93.1
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 8.3e-09 63.2 29 93.1
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 8.3e-09 63.2 29 93.1
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 8.3e-09 63.2 29 93.1
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 8.3e-09 63.2 29 93.1
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 8.3e-09 63.2 29 93.1
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 8.3e-09 63.2 29 93.1
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 8.3e-09 63.2 29 93.1
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 1.1e-08 62.8 29 89.7
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 1.1e-08 62.8 36 77.8
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 1.1e-08 62.8 36 77.8
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 1.1e-08 62.8 29 93.1
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 1.1e-08 62.8 29 93.1
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 1.1e-08 62.8 31 83.9
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 1.4e-08 62.4 29 89.7
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 1.4e-08 62.4 29 93.1
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 1.4e-08 62.4 28 96.4
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 1.4e-08 62.4 29 93.1
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 1.9e-08 62.0 29 93.1
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.9e-08 62.0 29 93.1
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.9e-08 62.0 29 93.1
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 1.9e-08 62.0 29 93.1
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 1.9e-08 62.0 29 89.7
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 1.9e-08 62.0 29 93.1
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.9e-08 62.0 29 89.7
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.9e-08 62.0 29 89.7
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 1.9e-08 62.0 29 89.7
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 2.4e-08 61.6 58 53.4
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 2.4e-08 61.6 29 89.7
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 2.4e-08 61.6 29 93.1
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 2.4e-08 61.6 29 93.1
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 2.4e-08 61.6 29 93.1
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 3.2e-08 61.2 29 86.2
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 3.2e-08 61.2 29 86.2
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 4.1e-08 60.8 58 51.7
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 4.1e-08 60.8 58 50.0
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 4.1e-08 60.8 58 50.0
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 4.1e-08 60.8 29 89.7
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 4.1e-08 60.8 29 89.7
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 4.1e-08 60.8 29 89.7
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 4.1e-08 60.8 29 89.7
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 4.1e-08 60.8 29 89.7
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 5.4e-08 60.5 29 93.1
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 5.4e-08 60.5 29 86.2
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 7.1e-08 60.1 29 89.7
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 7.1e-08 60.1 29 89.7
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 9.2e-08 59.7 55 47.3
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 9.2e-08 59.7 29 86.2
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 9.2e-08 59.7 29 86.2
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 9.2e-08 59.7 29 89.7
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 9.2e-08 59.7 29 89.7
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 1.2e-07 59.3 29 82.8
Nitab4.5_0000714g0130 Nicotiana tabacum HOM05D000083 ORTHO05D000196 1.2e-07 59.3 27 88.9
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 1.2e-07 59.3 29 89.7
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 1.6e-07 58.9 29 82.8
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 1.6e-07 58.9 58 51.7
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 1.6e-07 58.9 58 51.7
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 1.6e-07 58.9 29 86.2
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 2.1e-07 58.5 29 82.8
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-07 58.5 30 80.0
Nitab4.5_0000013g0330 Nicotiana tabacum HOM05D000083 ORTHO05D000196 2.1e-07 58.5 27 88.9
Nitab4.5_0013414g0010 Nicotiana tabacum HOM05D000083 ORTHO05D012214 2.1e-07 58.5 35 71.4
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 2.1e-07 58.5 29 82.8
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 2.7e-07 58.2 29 86.2
Nitab4.5_0012726g0020 Nicotiana tabacum HOM05D000083 ORTHO05D012214 2.7e-07 58.2 27 85.2
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 2.7e-07 58.2 29 86.2
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 3.5e-07 57.8 29 82.8
Nitab4.5_0012388g0010 Nicotiana tabacum HOM05D000083 ORTHO05D000196 3.5e-07 57.8 27 85.2
Nitab4.5_0013414g0030 Nicotiana tabacum HOM05D000083 ORTHO05D012214 3.5e-07 57.8 26 92.3
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 3.5e-07 57.8 29 86.2
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 4.6e-07 57.4 54 53.7
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 4.6e-07 57.4 54 53.7
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 4.6e-07 57.4 29 79.3
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 6.0e-07 57.0 29 86.2
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 6.0e-07 57.0 29 86.2
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 7.8e-07 56.6 29 79.3
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 7.8e-07 56.6 29 82.8
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 1.0e-06 56.2 29 82.8
Nitab4.5_0012726g0010 Nicotiana tabacum HOM05D000083 ORTHO05D000196 1.0e-06 56.2 27 81.5
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 1.3e-06 55.8 29 82.8
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 1.3e-06 55.8 29 82.8
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 1.3e-06 55.8 29 82.8
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 1.3e-06 55.8 29 82.8
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 1.3e-06 55.8 29 82.8
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 1.3e-06 55.8 29 86.2
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 1.3e-06 55.8 29 79.3
Nitab4.5_0005375g0020 Nicotiana tabacum HOM05D000083 ORTHO05D000196 1.3e-06 55.8 27 81.5
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 1.7e-06 55.5 29 79.3
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 1.7e-06 55.5 31 74.2
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 1.7e-06 55.5 29 79.3
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 1.7e-06 55.5 29 79.3
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 1.7e-06 55.5 29 79.3
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 1.7e-06 55.5 29 79.3
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 1.7e-06 55.5 29 79.3
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 1.7e-06 55.5 29 79.3
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 1.7e-06 55.5 29 79.3
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 1.7e-06 55.5 29 79.3
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 1.7e-06 55.5 29 79.3
Nitab4.5_0007219g0010 Nicotiana tabacum HOM05D000083 ORTHO05D000196 1.7e-06 55.5 27 85.2
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 1.7e-06 55.5 29 79.3
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 1.7e-06 55.5 29 79.3
Nitab4.5_0001520g0020 Nicotiana tabacum HOM05D000083 ORTHO05D000196 2.3e-06 55.1 27 81.5
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.3e-06 55.1 27 88.9
Nitab4.5_0018401g0010 Nicotiana tabacum HOM05D000083 ORTHO05D012214 3.9e-06 54.3 27 85.2
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 8.6e-06 53.1 29 75.9


User provided reference genes

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