Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.0e-138 495.7 250 100.0
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.8e-123 446.0 250 90.4
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.9e-121 438.7 268 85.4
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 6.4e-116 421.0 250 84.8
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 6.0e-106 387.9 250 80.4
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 8.6e-105 384.0 250 79.2
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.1e-104 383.6 250 79.6
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 1.1e-102 377.1 250 77.2
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.3e-97 359.4 251 75.7
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.6e-93 345.9 254 71.7
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.1e-91 340.5 235 73.6
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 7.8e-90 334.3 251 68.5
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 1.3e-89 333.6 251 65.7
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.7e-89 333.2 251 68.1
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 1.7e-89 333.2 251 67.7
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 3.9e-89 332.0 258 69.0
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 1.5e-88 330.1 263 69.2
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.5e-88 330.1 270 65.6
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 4.3e-88 328.6 251 69.3
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 6.2e-87 324.7 224 73.2
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 4.0e-86 322.0 254 64.6
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 6.9e-86 321.2 259 65.6
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 3.4e-85 318.9 253 68.0
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 5.8e-85 318.2 255 65.1
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 9.9e-85 317.4 251 64.9
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 1.3e-84 317.0 201 77.6
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 8.4e-84 314.3 253 67.2
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 1.4e-83 313.5 250 65.2
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 1.4e-83 313.5 289 59.9
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 3.2e-83 312.4 250 66.0
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 4.2e-83 312.0 251 66.1
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 4.2e-83 312.0 272 63.2
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 5.4e-83 311.6 247 65.6
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 7.1e-83 311.2 246 65.0
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 2.1e-82 309.7 250 65.2
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 6.0e-82 308.1 257 63.0
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.0e-81 307.4 253 63.2
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 1.0e-81 307.4 200 77.0
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.7e-81 306.6 254 64.2
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 2.3e-81 306.2 250 63.6
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 3.0e-81 305.8 249 65.5
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.0e-81 305.8 250 66.0
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.1e-81 305.1 250 65.6
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 8.7e-81 304.3 250 65.6
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.5e-80 303.5 250 64.0
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 1.5e-80 303.5 251 64.1
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 2.5e-80 302.8 248 62.9
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 3.3e-80 302.4 256 63.7
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 5.6e-80 301.6 251 62.9
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 7.3e-80 301.2 244 63.1
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 9.6e-80 300.8 251 62.5
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 1.3e-79 300.4 253 62.1
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 2.1e-79 299.7 248 62.5
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 4.8e-79 298.5 244 62.7
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 4.8e-79 298.5 244 62.7
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 6.2e-79 298.1 246 60.2
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 6.2e-79 298.1 219 68.0
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 8.1e-79 297.7 250 62.4
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 1.1e-78 297.4 184 76.6
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.4e-78 297.0 194 72.2
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.8e-78 296.6 275 61.1
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 2.4e-78 296.2 275 61.1
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 4.0e-78 295.4 247 61.9
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 5.3e-78 295.0 247 59.9
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 9.0e-78 294.3 256 62.5
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 9.0e-78 294.3 256 61.3
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.2e-77 293.9 251 60.2
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.5e-77 293.5 250 62.4
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 2.0e-77 293.1 246 61.4
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 2.6e-77 292.7 256 60.5
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 4.5e-77 292.0 250 62.8
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 5.8e-77 291.6 251 62.2
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 9.9e-77 290.8 346 51.7
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 1.3e-76 290.4 172 83.7
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 2.9e-76 289.3 252 61.5
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 4.9e-76 288.5 253 61.3
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.4e-75 287.0 185 74.6
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 1.9e-75 286.6 250 59.6
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 2.4e-75 286.2 249 61.4
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 4.2e-75 285.4 253 58.9
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 2.3e-73 279.6 250 58.8
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 3.0e-73 279.3 249 58.6
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 3.0e-73 279.3 250 56.8
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.0e-73 279.3 251 61.0
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 6.7e-73 278.1 250 58.0
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 8.7e-73 277.7 187 70.6
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 4.3e-72 275.4 246 57.7
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 5.6e-72 275.0 254 56.7
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 5.6e-72 275.0 250 56.8
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 9.6e-72 274.2 253 55.7
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 1.6e-71 273.5 254 56.3
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 2.1e-71 273.1 252 57.5
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 2.8e-71 272.7 255 56.9
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 2.4e-70 269.6 248 57.3
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 4.0e-70 268.9 251 54.6
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 6.9e-70 268.1 252 55.6
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 7.6e-69 264.6 243 58.4
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 7.6e-69 264.6 248 58.5
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 8.4e-68 261.2 167 75.4
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.7e-66 256.1 249 53.0
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.0e-65 254.2 205 62.4
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 1.0e-65 254.2 146 84.2
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 4.3e-64 248.8 195 62.6
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 5.6e-64 248.4 178 66.9
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 2.8e-63 246.1 226 55.3
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 3.7e-63 245.7 216 61.1
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 5.3e-62 241.9 186 63.4
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 1.2e-61 240.7 211 59.7
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 7.6e-61 238.0 250 54.8
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 1.0e-60 237.7 181 64.1
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 1.4e-59 233.8 179 65.9
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 7.9e-58 228.0 171 67.8
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 5.1e-57 225.3 175 63.4
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 8.7e-57 224.6 261 49.0
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 3.4e-53 212.6 182 58.8
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 4.5e-53 212.2 162 66.7
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 3.2e-51 206.1 207 58.5
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 1.3e-49 200.7 190 58.4
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.3e-49 200.7 185 57.3
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 3.0e-49 199.5 178 61.8
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 6.3e-47 191.8 215 51.2
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.4e-46 190.7 180 58.3
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 5.0e-44 182.2 154 62.3
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 5.0e-44 182.2 154 62.3
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 7.2e-43 178.3 181 50.8
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 9.4e-43 177.9 182 47.3
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 8.8e-41 171.4 101 85.1
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 2.0e-40 170.2 160 56.9
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 4.4e-40 169.1 151 62.9
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 2.4e-38 163.3 116 69.8
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 2.0e-37 160.2 155 56.1
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 5.9e-37 158.7 120 70.0
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 6.5e-36 155.2 139 59.0
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 6.7e-33 145.2 131 58.0
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.1e-32 144.4 182 50.5
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 6.3e-31 138.7 127 55.1
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 3.5e-29 132.9 95 65.3
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 2.2e-28 130.2 187 42.2
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 1.1e-27 127.9 119 56.3
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 7.2e-27 125.2 118 54.2
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 2.6e-24 116.7 185 37.8
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.3e-24 116.3 72 75.0
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 8.2e-23 111.7 134 45.5
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 8.2e-23 111.7 134 45.5
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 3.2e-19 99.8 67 73.1
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 4.2e-19 99.4 70 67.1
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 3.6e-18 96.3 67 65.7
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.0e-17 94.7 65 69.2
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 1.7e-15 87.4 52 80.8
PGSC0003DMG400043354 Solanum tuberosum HOM05D004791 ORTHO05D005637 1.0e-12 78.2 79 54.4
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 6.1e-10 68.9 108 43.5
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.3e-09 67.0 97 45.4
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.0e-09 66.6 97 45.4
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 8.8e-09 65.1 39 79.5
Oeu020446.1 Olea europaea HOM05D004791 ORTHO05D005637 2.4e-06 57.0 84 44.0


User provided reference genes

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