Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.4e-241 837.0 429 100.0
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.4e-219 766.1 429 89.0
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 9.0e-219 763.5 429 89.0
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 2.9e-217 758.4 429 88.3
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 1.1e-213 746.5 429 86.9
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 5.3e-203 711.1 429 87.4
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 9.0e-203 710.3 426 83.6
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 3.4e-202 708.4 426 82.4
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 2.9e-201 705.3 426 81.5
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 8.4e-201 703.7 426 81.5
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 1.1e-200 703.4 432 81.5
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.7e-198 694.1 429 81.6
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.5e-197 693.0 444 83.1
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 5.5e-192 674.5 427 78.2
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 7.1e-192 674.1 426 77.9
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 2.1e-191 672.5 422 77.5
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 7.9e-191 670.6 425 78.8
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 1.8e-187 659.4 422 76.1
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 9.0e-187 657.1 427 76.8
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 1.5e-186 656.4 422 77.3
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 3.4e-186 655.2 422 76.5
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 1.3e-185 653.3 422 77.0
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 2.2e-185 652.5 421 76.5
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.1e-184 650.2 422 76.3
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 1.1e-184 650.2 422 76.3
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.2e-184 648.7 422 75.4
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.1e-183 646.0 422 75.8
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.7e-183 645.6 422 75.6
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 2.7e-183 645.6 427 74.5
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 6.1e-183 644.4 422 74.4
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 7.9e-183 644.0 433 76.7
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 7.9e-183 644.0 430 72.8
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 7.9e-183 644.0 426 75.1
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 3.0e-182 642.1 422 74.2
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 2.0e-181 639.4 429 73.0
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 3.3e-181 638.6 426 73.7
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 5.7e-181 637.9 427 76.1
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 5.7e-181 637.9 422 74.9
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 2.8e-180 635.6 422 74.9
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 3.7e-180 635.2 422 73.2
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 6.3e-180 634.4 422 74.9
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 5.3e-179 631.3 422 73.9
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 2.0e-178 629.4 429 72.7
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.6e-178 629.0 422 74.2
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 3.4e-178 628.6 422 74.2
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 4.5e-178 628.2 420 77.1
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 7.7e-178 627.5 422 73.5
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 2.2e-177 625.9 422 73.5
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 2.9e-177 625.5 422 73.5
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 5.0e-177 624.8 419 72.8
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 6.5e-177 624.4 422 74.2
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 2.1e-175 619.4 422 73.0
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 2.7e-175 619.0 427 71.7
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.0e-174 617.1 422 72.0
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 1.8e-174 616.3 422 72.0
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 2.3e-174 615.9 422 72.0
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 5.1e-174 614.8 419 71.6
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 2.0e-173 612.8 428 71.3
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 2.6e-173 612.5 423 71.9
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.6e-173 612.5 419 71.6
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 4.4e-173 611.7 419 71.4
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 9.7e-173 610.5 424 71.9
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 1.7e-172 609.8 422 71.8
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 4.8e-172 608.2 426 71.6
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 6.3e-172 607.8 429 70.6
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 3.1e-171 605.5 424 71.9
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 7.0e-171 604.4 456 68.2
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 1.3e-169 600.1 419 72.6
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 1.4e-168 596.7 431 70.8
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.4e-168 596.7 422 70.6
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 5.5e-168 594.7 426 72.1
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.3e-166 589.3 461 65.3
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 2.3e-166 589.3 422 69.4
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 1.5e-165 586.6 403 71.7
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 2.6e-165 585.9 424 68.9
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 1.7e-164 583.2 424 68.4
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 4.8e-164 581.6 455 66.8
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.2e-162 577.0 429 67.4
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 1.2e-162 577.0 422 67.1
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 1.2e-162 577.0 422 71.1
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 1.9e-160 569.7 426 67.6
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 2.5e-160 569.3 422 66.6
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 7.2e-160 567.8 424 67.9
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 2.1e-159 566.2 426 67.8
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 5.7e-157 558.1 424 66.0
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.7e-156 556.6 378 75.7
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.8e-156 555.8 425 67.1
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 7.0e-155 551.2 422 66.1
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 2.2e-153 546.2 436 66.5
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 5.0e-153 545.0 427 63.7
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 4.2e-152 542.0 426 63.6
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 5.5e-152 541.6 425 63.5
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 9.4e-152 540.8 426 64.8
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 1.6e-151 540.0 427 63.2
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 1.6e-151 540.0 430 63.7
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 2.1e-151 539.7 426 63.1
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 4.7e-151 538.5 426 63.1
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 6.1e-151 538.1 426 64.8
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 8.0e-151 537.7 422 62.1
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 3.0e-150 535.8 423 63.1
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 4.0e-150 535.4 321 81.3
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 8.8e-150 534.3 425 64.0
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 1.3e-148 530.4 422 65.6
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 3.1e-147 525.8 310 81.9
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 1.6e-146 523.5 426 62.4
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 1.0e-145 520.8 425 61.6
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 1.3e-145 520.4 425 61.6
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 1.3e-145 520.4 425 61.6
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 8.6e-145 517.7 426 62.0
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 1.1e-144 517.3 426 61.5
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 1.9e-144 516.5 425 61.4
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 7.2e-144 514.6 426 61.3
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 9.5e-144 514.2 425 61.4
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 3.6e-143 512.3 422 61.4
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 1.2e-141 507.3 426 60.3
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 2.0e-141 506.5 426 61.3
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 2.8e-140 502.7 351 69.8
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 7.0e-139 498.0 426 60.1
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 5.9e-138 495.0 383 65.0
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 8.6e-137 491.1 387 64.9
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 9.5e-136 487.6 444 58.6
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 3.6e-127 459.1 427 55.3
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 3.6e-127 459.1 427 54.8
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 8.0e-127 458.0 451 53.9
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 7.5e-125 451.4 424 54.5
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 9.8e-125 451.1 388 63.1
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 4.3e-120 435.6 400 60.0
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 9.5e-112 407.9 239 83.7
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 4.7e-111 405.6 430 50.0
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 8.1e-111 404.8 238 83.6
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 6.8e-110 401.7 428 56.3
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 2.2e-108 396.7 284 69.4
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 3.4e-101 372.9 336 58.6
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 1.4e-99 367.5 358 55.3
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 6.6e-97 358.6 356 54.8
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 2.3e-73 280.4 430 38.6
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 5.3e-70 269.2 192 73.4
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 1.0e-68 265.0 214 63.6
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 3.9e-65 253.1 325 46.5
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 2.2e-60 237.3 352 38.1
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 3.7e-55 219.9 194 59.8
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 7.2e-51 205.7 375 39.2
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 1.1e-48 198.4 194 54.6
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 3.7e-47 193.4 305 41.3
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 1.1e-46 191.8 143 65.0
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 5.9e-45 186.0 250 46.0
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 1.2e-34 151.8 323 31.0
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.3e-31 141.7 194 44.3
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 4.1e-30 136.7 105 67.6
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.1e-26 124.4 119 50.4
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 1.4e-25 121.7 124 48.4
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 4.4e-24 116.7 78 67.9
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 4.4e-24 116.7 78 67.9
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 4.9e-23 113.2 76 69.7
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 8.9e-17 92.4 66 71.2
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 2.2e-15 87.8 48 87.5
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.0e-12 79.0 60 68.3
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 1.8e-09 68.2 53 67.9
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 6.8e-09 66.2 49 65.3
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 6.8e-09 66.2 49 65.3
EL10As11g23980 Beta vulgaris HOM05D004649 ORTHO05D005446 8.9e-09 65.9 44 65.9
ECA232G4246 Erigeron canadensis HOM05D004649 ORTHO05D005446 8.9e-09 65.9 52 61.5
FAN14G5770 Fragaria x ananassa HOM05D004649 ORTHO05D005446 2.6e-08 64.3 133 33.8
Thhalv10007479m.g Eutrema salsugineum HOM05D002716 ORTHO05D003324 1.3e-07 62.0 202 25.7
CARHR069530 Cardamine hirsuta HOM05D002716 ORTHO05D003324 2.2e-07 61.2 205 27.8
Sp1g17970 Schrenkiella parvula HOM05D002716 ORTHO05D003324 2.2e-07 61.2 202 25.7
Carub.0001s1973 Capsella rubella HOM05D002716 ORTHO05D003324 2.9e-07 60.8 202 25.7
CARHR020700 Cardamine hirsuta HOM05D002716 ORTHO05D003324 2.9e-07 60.8 202 25.7
AT1G20200 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 3.7e-07 60.5 202 25.7
BcaB03g12876 Brassica carinata HOM05D002716 ORTHO05D003324 3.7e-07 60.5 202 25.7
AL1G33040 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 4.9e-07 60.1 202 25.7
AL2G36010 Arabidopsis lyrata HOM05D002716 ORTHO05D003324 8.3e-07 59.3 205 26.3
A07p41500 Brassica napus HOM05D002716 ORTHO05D003324 8.3e-07 59.3 202 25.7
BraA07t31682Z Brassica rapa HOM05D002716 ORTHO05D003324 8.3e-07 59.3 202 25.7
FvH4_6g52500 Fragaria vesca HOM05D004649 ORTHO05D005446 8.3e-07 59.3 48 56.2
BcaC08g47308 Brassica carinata HOM05D002716 ORTHO05D003324 1.1e-06 58.9 202 25.7
C06p49910 Brassica napus HOM05D002716 ORTHO05D003324 1.1e-06 58.9 202 25.7
BolC6t40029H Brassica oleracea HOM05D002716 ORTHO05D003324 1.1e-06 58.9 202 25.7
Carub.0002s2288 Capsella rubella HOM05D002716 ORTHO05D003324 1.1e-06 58.9 205 25.9
Sp5g31110 Schrenkiella parvula HOM05D002716 ORTHO05D003324 1.1e-06 58.9 202 25.2
AT1G75990 Arabidopsis thaliana HOM05D002716 ORTHO05D003324 1.9e-06 58.2 205 25.9
Nn4g22394 Nelumbo nucifera HOM05D004649 ORTHO05D005446 4.1e-06 57.0 38 68.4
BcaC07g39026 Brassica carinata HOM05D002716 ORTHO05D003324 7.1e-06 56.2 202 24.3
C08p20020 Brassica napus HOM05D002716 ORTHO05D003324 7.1e-06 56.2 202 24.3
BolC8t49637H Brassica oleracea HOM05D002716 ORTHO05D003324 7.1e-06 56.2 202 24.3


User provided reference genes

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