Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000524g0050 Nicotiana tabacum HOM05D005452 ORTHO05D006618 1.4e-60 236.1 123 100.0
Nitab4.5_0004217g0010 Nicotiana tabacum HOM05D001410 ORTHO05D006618 9.6e-49 196.8 106 98.1
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 2.8e-48 195.3 106 97.2
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 3.4e-38 161.8 102 86.3
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 7.6e-38 160.6 109 78.9
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 7.6e-38 160.6 110 82.7
Peaxi162Scf00128g00434 Petunia axillaris HOM05D005452 ORTHO05D006618 3.5e-35 151.8 105 80.0
Peaxi162Scf00067g00116 Petunia axillaris HOM05D005452 ORTHO05D006618 3.9e-34 148.3 114 71.9
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 2.5e-33 145.6 108 75.9
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 3.3e-33 145.2 108 75.0
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 7.4e-33 144.1 110 73.6
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 9.6e-33 143.7 107 72.9
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 3.7e-32 141.7 107 72.0
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 4.8e-32 141.4 107 73.8
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 1.1e-31 140.2 107 73.8
Lsat_1_v5_gn_8_152800 Lactuca sativa HOM05D005452 ORTHO05D006618 5.3e-31 137.9 108 69.4
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 1.2e-30 136.7 108 72.2
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 1.5e-30 136.3 108 69.4
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 1.0e-29 133.7 107 74.8
Sc04g0009650 Simmondsia chinensis HOM05D005452 ORTHO05D006618 1.7e-29 132.9 107 70.1
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 1.1e-28 130.2 107 66.4
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 1.1e-28 130.2 87 81.6
Lsat_1_v5_gn_4_85301 Lactuca sativa HOM05D005452 ORTHO05D006618 1.1e-28 130.2 107 66.4
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 1.4e-28 129.8 100 72.0
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 3.2e-28 128.6 111 68.5
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 3.2e-28 128.6 108 66.7
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 5.5e-28 127.9 108 66.7
HanXRQChr12g0371911 Helianthus annuus HOM05D005452 ORTHO05D006618 9.3e-28 127.1 107 66.4
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 9.3e-28 127.1 110 66.4
AUR62005503 Chenopodium quinoa HOM05D005452 ORTHO05D006618 1.6e-27 126.3 103 67.0
EL10Ac5g10516 Beta vulgaris HOM05D005452 ORTHO05D006618 2.1e-27 125.9 107 66.4
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 2.7e-27 125.6 107 66.4
Atru.chr11.2163 Acer truncatum HOM05D005452 ORTHO05D006618 4.6e-27 124.8 111 64.0
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 6.0e-27 124.4 80 85.0
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 6.0e-27 124.4 108 69.4
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 6.0e-27 124.4 108 67.6
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 6.0e-27 124.4 107 67.3
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 1.0e-26 123.6 107 66.4
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 1.0e-26 123.6 115 63.5
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.0e-26 123.6 108 63.9
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 1.0e-26 123.6 82 79.3
Hund06040 Selenicereus undatus HOM05D005452 ORTHO05D006618 1.0e-26 123.6 106 65.1
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 1.3e-26 123.2 108 67.6
Cpa.g.c31584 Carica papaya HOM05D005452 ORTHO05D006618 2.3e-26 122.5 108 65.7
Cfa009234 Carpinus fangiana HOM05D005452 ORTHO05D006618 2.3e-26 122.5 107 63.6
FAN13G0782 Fragaria x ananassa HOM05D005452 ORTHO05D006618 2.3e-26 122.5 108 66.7
Eucgr.B03269 Eucalyptus grandis HOM05D005452 ORTHO05D006618 3.0e-26 122.1 107 67.3
Manes.13G021600 Manihot esculenta HOM05D005452 ORTHO05D006618 3.9e-26 121.7 110 65.5
SGA_v2.0_scaffold293G47424 Striga asiatica HOM05D005452 ORTHO05D006618 3.9e-26 121.7 93 72.0
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 5.1e-26 121.3 109 65.1
ECA233G5110 Erigeron canadensis HOM05D005452 ORTHO05D006618 6.7e-26 120.9 107 63.6
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 1.1e-25 120.2 106 67.0
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 1.5e-25 119.8 106 66.0
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 1.5e-25 119.8 105 64.8
Lalb_Chr01g0021741 Lupinus albus HOM05D005452 ORTHO05D006618 1.5e-25 119.8 110 62.7
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 1.9e-25 119.4 103 67.0
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 2.5e-25 119.0 108 62.0
VMungo1080G1735 Vigna mungo HOM05D005452 ORTHO05D006618 3.3e-25 118.6 111 62.2
Gohir.A05G223400 Gossypium hirsutum HOM05D005452 ORTHO05D006618 4.3e-25 118.2 108 64.8
Lj5g0027337 Lotus japonicus HOM05D005452 ORTHO05D006618 4.3e-25 118.2 111 63.1
Gorai.009G233700 Gossypium raimondii HOM05D005452 ORTHO05D006618 5.7e-25 117.9 108 63.9
SGA_v2.0_scaffold12G06036 Striga asiatica HOM05D005452 ORTHO05D006618 7.4e-25 117.5 91 73.6
Lj4g0014743 Lotus japonicus HOM05D005452 ORTHO05D006618 9.7e-25 117.1 111 62.2
unitig_22.g6942 Utricularia gibba HOM05D005452 ORTHO05D006618 1.3e-24 116.7 80 78.8
Migut.K00615 Erythranthe guttata HOM05D005452 ORTHO05D006618 2.2e-24 115.9 90 72.2
SalBow6G0301 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.2e-24 115.9 87 72.4
SHI03748 Sapria himalayana HOM05D005452 ORTHO05D006618 2.2e-24 115.9 123 55.3
Aqoxy3G01257 Aquilegia oxysepala HOM05D005452 ORTHO05D006618 2.8e-24 115.5 109 62.4
CsaV3_3G032030 Cucumis sativus L. HOM05D005452 ORTHO05D006618 2.8e-24 115.5 80 77.5
Lalb_Chr03g0040661 Lupinus albus HOM05D005452 ORTHO05D006618 2.8e-24 115.5 80 78.8
PSO017G6805 Papaver somniferum HOM05D005452 ORTHO05D006618 2.8e-24 115.5 109 59.6
AT3G26360 Arabidopsis thaliana HOM05D005452 ORTHO05D006618 3.7e-24 115.2 107 62.6
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 3.7e-24 115.2 108 62.0
SalBow6G0335 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.8e-24 114.8 84 75.0
SalBow6G1267 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.8e-24 114.8 84 75.0
SalBow6G2856 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.8e-24 114.8 84 75.0
SalBow6G4340 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.8e-24 114.8 84 75.0
BcaB07g30231 Brassica carinata HOM05D005452 ORTHO05D006618 6.3e-24 114.4 107 61.7
BcaC03g17336 Brassica carinata HOM05D005452 ORTHO05D006618 6.3e-24 114.4 107 61.7
A02p34530 Brassica napus HOM05D005452 ORTHO05D006618 6.3e-24 114.4 107 61.7
C02p52850 Brassica napus HOM05D005452 ORTHO05D006618 6.3e-24 114.4 107 61.7
BraA02t08463Z Brassica rapa HOM05D005452 ORTHO05D006618 6.3e-24 114.4 107 61.7
TPR.G32914 Trifolium pratense HOM05D005452 ORTHO05D006618 6.3e-24 114.4 109 61.5
C07p35420 Brassica napus HOM05D005452 ORTHO05D006618 8.2e-24 114.0 110 60.9
MBI15_g04991_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 8.2e-24 114.0 142 50.0
Medtr3g464760 Medicago truncatula HOM05D005452 ORTHO05D006618 8.2e-24 114.0 111 62.2
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 8.2e-24 114.0 80 78.8
TWI36G1628 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 8.2e-24 114.0 108 62.0
SalBow6G4107 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.1e-23 113.6 79 78.5
SalBow6G4977 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.1e-23 113.6 79 78.5
Psat5g193600 Pisum sativum HOM05D005452 ORTHO05D006618 1.4e-23 113.2 107 64.5
SalBow6G3385 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.8e-23 112.8 85 71.8
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 2.4e-23 112.5 111 61.3
Glyma.09G244200 Glycine max HOM05D005452 ORTHO05D006618 2.4e-23 112.5 110 61.8
THA.LOC104824009 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 2.4e-23 112.5 107 59.8
Glyma.18G249300 Glycine max HOM05D005452 ORTHO05D006618 3.1e-23 112.1 110 60.9
Nn1g08774 Nelumbo nucifera HOM05D005452 ORTHO05D006618 3.1e-23 112.1 108 62.0
SalBow6G6484 Salvia bowleyana HOM05D005452 ORTHO05D006618 3.1e-23 112.1 84 73.8
THA.LOC104805276 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 3.1e-23 112.1 107 60.7
BolC7t44066H Brassica oleracea HOM05D005452 ORTHO05D006618 4.1e-23 111.7 107 61.7
PSO210G2974 Papaver somniferum HOM05D005452 ORTHO05D006618 4.1e-23 111.7 109 57.8
A06p42060 Brassica napus HOM05D005452 ORTHO05D006618 5.3e-23 111.3 107 61.7
BraA06t27123Z Brassica rapa HOM05D005452 ORTHO05D006618 5.3e-23 111.3 107 61.7
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 5.3e-23 111.3 109 60.6
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 6.9e-23 110.9 107 57.0
Sp2g15510 Schrenkiella parvula HOM05D005452 ORTHO05D006618 9.0e-23 110.5 107 60.7
BolC2t11364H Brassica oleracea HOM05D005452 ORTHO05D006618 1.2e-22 110.2 107 59.8
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 1.2e-22 110.2 78 76.9
Thhalv10005184m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 2.0e-22 109.4 107 58.9
CARHR147370 Cardamine hirsuta HOM05D005452 ORTHO05D006618 2.6e-22 109.0 107 60.7
Cc01_g03580 Coffea canephora HOM05D005452 ORTHO05D006618 2.6e-22 109.0 107 61.7
Gohir.D05G226100 Gossypium hirsutum HOM05D005452 ORTHO05D006618 2.6e-22 109.0 75 80.0
ATR0691G211 Amborella trichopoda HOM05D005452 ORTHO05D006618 3.4e-22 108.6 77 74.0
Carub.0005s0428 Capsella rubella HOM05D005452 ORTHO05D006618 3.4e-22 108.6 107 60.7
Thhalv10005186m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 3.4e-22 108.6 107 58.9
Aa31LG2G6150 Aethionema arabicum HOM05D005452 ORTHO05D006618 5.9e-22 107.8 80 75.0
AL5G15130 Arabidopsis lyrata HOM05D005452 ORTHO05D006618 1.7e-21 106.3 85 69.4
MD02G1109400 Malus domestica HOM05D005452 ORTHO05D006618 2.2e-21 105.9 78 73.1
VMungo1383G1569 Vigna mungo HOM05D005452 ORTHO05D006618 2.9e-21 105.5 81 71.6
Lj4g0021307 Lotus japonicus HOM05D005452 ORTHO05D006618 5.0e-21 104.8 107 58.9
Phvul.008G048300 Phaseolus vulgaris HOM05D005452 ORTHO05D006618 3.2e-20 102.1 81 69.1
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 7.2e-20 100.9 110 52.7
CDE10G1265 Ceratophyllum demersum HOM05D005452 ORTHO05D006618 1.6e-19 99.8 107 52.3
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 1.6e-19 99.8 108 53.7
Potri.010G048600 Populus trichocarpa HOM05D005452 ORTHO05D006618 3.6e-19 98.6 82 64.6
vmacro01118 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 7.9e-19 97.4 115 51.3
SalBow6G5661 Salvia bowleyana HOM05D005452 ORTHO05D006618 3.3e-17 92.0 70 72.9
SEGI_39778 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 7.4e-17 90.9 85 60.0
SEGI_27388 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 1.7e-16 89.7 79 63.3
Zm00001eb217020 Zea mays HOM05D005452 ORTHO05D006618 1.7e-16 89.7 80 60.0
MD04G1159200 Malus domestica HOM05D005452 ORTHO05D006618 2.8e-16 89.0 78 65.4
Zm00001eb053730 Zea mays HOM05D005452 ORTHO05D006618 4.8e-16 88.2 80 58.8
MD12G1125700 Malus domestica HOM05D005452 ORTHO05D006618 6.3e-16 87.8 108 50.9
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 1.8e-15 86.3 96 56.2
Os03g0694700 Oryza sativa ssp. japonica HOM05D005452 ORTHO05D006618 2.6e-14 82.4 82 58.5
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 1.1e-09 67.0 80 52.5
Medtr3g450960 Medicago truncatula HOM05D005452 ORTHO05D006618 1.5e-09 66.6 58 65.5
SalBow6G2133 Salvia bowleyana HOM05D009895 ORTHO05D006618 5.7e-09 64.7 49 67.3
Nn1g09342 Nelumbo nucifera HOM05D005452 ORTHO05D006618 2.2e-08 62.8 58 63.8
unitig_8.g2920 Utricularia gibba HOM05D005452 ORTHO05D006618 2.2e-08 62.8 56 66.1
SalBow6G0426 Salvia bowleyana HOM05D005452 ORTHO05D006618 5.3e-07 58.2 44 70.5
Nitab4.5_0001978g0030 Nicotiana tabacum HOM05D005452 ORTHO05D006618 1.5e-06 56.6 30 100.0


User provided reference genes

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