Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 9.0e-221 771.2 900 100.0
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 1.4e-117 428.3 761 87.3
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 9.6e-114 415.6 754 89.0
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 1.9e-106 391.3 753 77.8
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 3.3e-106 390.6 754 87.4
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 5.9e-87 326.6 654 76.1
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 3.6e-76 290.8 684 66.1
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 9.8e-58 229.6 204 60.3
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 3.5e-55 221.1 203 58.6
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 6.6e-54 216.9 205 56.6
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 1.2e-52 212.6 184 60.3
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 4.7e-52 210.7 219 53.0
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 1.6e-47 195.7 236 83.1
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 2.7e-47 194.9 219 50.2
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 2.3e-46 191.8 206 50.5
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 5.6e-45 187.2 190 53.7
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 8.0e-44 183.3 189 52.9
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 4.0e-43 181.0 217 46.1
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 8.9e-43 179.9 228 47.8
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.5e-42 179.1 212 50.0
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 3.7e-41 174.5 178 52.2
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 4.9e-41 174.1 210 47.6
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 1.1e-40 172.9 212 49.1
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 1.1e-40 172.9 178 50.6
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 1.9e-40 172.2 216 45.8
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 4.1e-40 171.0 208 45.7
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 5.4e-40 170.6 168 51.8
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 7.0e-40 170.2 175 51.4
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 1.0e-38 166.4 202 48.0
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 2.3e-38 165.2 223 46.2
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 3.0e-38 164.9 191 45.5
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 8.6e-38 163.3 212 46.2
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.1e-37 162.9 173 50.9
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.9e-37 162.2 173 50.3
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 2.5e-37 161.8 173 50.3
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 3.3e-37 161.4 175 51.4
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 5.6e-37 160.6 216 44.4
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 3.6e-36 157.9 188 51.1
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 4.7e-36 157.5 158 51.3
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 6.2e-36 157.1 198 43.4
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 8.0e-36 156.8 151 51.7
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 6.8e-35 153.7 181 45.9
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 6.8e-35 153.7 186 46.8
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 6.8e-35 153.7 205 44.9
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 1.2e-34 152.9 181 45.3
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 1.2e-34 152.9 220 43.2
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 2.6e-34 151.8 188 43.6
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.6e-34 151.8 185 45.4
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 4.4e-34 151.0 234 41.0
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 5.8e-34 150.6 195 44.6
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 7.5e-34 150.2 175 48.0
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 2.2e-33 148.7 208 41.3
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 2.9e-33 148.3 229 44.1
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 2.9e-33 148.3 204 43.6
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 3.7e-33 147.9 151 49.7
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 3.7e-33 147.9 217 41.9
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.1e-32 146.4 188 43.1
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 1.4e-32 146.0 175 42.3
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.9e-32 145.6 196 43.4
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.9e-32 145.6 196 43.9
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 1.2e-31 142.9 219 42.9
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 6.0e-31 140.6 168 43.5
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 6.0e-31 140.6 163 41.7
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 6.0e-31 140.6 202 40.1
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 3.9e-30 137.9 207 39.6
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 5.1e-30 137.5 222 38.7
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 6.6e-30 137.1 226 36.3
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 1.1e-29 136.3 189 44.4
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 3.3e-29 134.8 189 43.9
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 4.3e-29 134.4 168 42.3
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 7.3e-29 133.7 197 40.6
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 7.3e-29 133.7 162 42.6
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 1.2e-28 132.9 203 42.9
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 1.6e-28 132.5 198 41.4
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 3.6e-28 131.3 189 43.4
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 4.7e-28 131.0 177 41.2
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 1.1e-27 129.8 196 41.3
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 1.1e-27 129.8 150 48.0
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 1.1e-27 129.8 189 41.8
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 1.4e-27 129.4 200 42.5
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 2.3e-27 128.6 185 42.2
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 2.3e-27 128.6 189 41.3
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 2.3e-27 128.6 178 38.2
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 3.1e-27 128.3 217 40.1
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 6.8e-27 127.1 199 41.7
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 8.9e-27 126.7 127 50.4
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 5.8e-26 124.0 210 35.2
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.3e-25 122.9 189 38.1
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 3.7e-25 121.3 202 36.1
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.4e-24 119.4 178 37.1
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.9e-24 119.0 155 41.9
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 7.1e-24 117.1 146 41.1
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 2.7e-23 115.2 179 42.5
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 2.7e-23 115.2 157 42.7
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 3.5e-23 114.8 202 37.6
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 4.6e-23 114.4 190 35.8
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 1.7e-22 112.5 196 34.7
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 2.3e-22 112.1 213 36.2
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 6.6e-22 110.5 222 32.4
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 6.6e-22 110.5 142 43.7
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 1.5e-21 109.4 218 35.3
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 1.9e-21 109.0 155 38.7
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 4.3e-21 107.8 146 43.2
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 1.2e-20 106.3 141 42.6
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 8.1e-20 103.6 205 35.1
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.4e-19 102.8 158 34.2
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 6.8e-19 100.5 222 36.0
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 3.4e-18 98.2 229 40.2
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 4.4e-18 97.8 205 34.6
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 9.9e-18 96.7 221 34.8
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 1.3e-17 96.3 187 34.8
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 1.3e-17 96.3 158 32.9
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 3.8e-17 94.7 162 34.6
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 1.9e-16 92.4 150 35.3
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 9.2e-16 90.1 94 48.9
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 2.7e-15 88.6 239 53.1
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 6.0e-15 87.4 232 62.1
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 1.3e-14 86.3 169 31.4
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 5.1e-14 84.3 133 36.8
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 8.7e-14 83.6 192 30.7
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 1.9e-13 82.4 182 30.2
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 4.3e-13 81.3 105 41.9
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 5.6e-13 80.9 96 45.8
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 4.7e-12 77.8 102 43.1
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 8.1e-12 77.0 137 33.6
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 2.4e-11 75.5 125 35.2
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 4.0e-11 74.7 125 35.2
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 4.0e-11 74.7 102 40.2
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 3.4e-10 71.6 170 30.0
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 3.4e-10 71.6 170 30.0
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 3.4e-10 71.6 170 30.0
MELO3C010547.2 Cucumis melo HOM05D004824 ORTHO05D003903 3.4e-10 71.6 66 48.5
PGSC0003DMG400002555 Solanum tuberosum HOM05D007893 ORTHO05D010042 9.9e-10 70.1 221 25.8
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 1.3e-09 69.7 154 31.2
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 1.7e-09 69.3 232 54.7
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 2.2e-09 68.9 95 40.0
MD14G1081200 Malus domestica HOM05D007893 ORTHO05D010042 2.9e-09 68.6 150 28.7
CiPaw.12G066600 Carya illinoinensis HOM05D007893 ORTHO05D010042 3.8e-09 68.2 184 25.5
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 4.9e-09 67.8 127 34.6
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 6.4e-09 67.4 213 22.5
Cpa.g.sc159.24 Carica papaya HOM05D007893 ORTHO05D010042 8.4e-09 67.0 150 25.3
TWI81G0227 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 8.4e-09 67.0 148 28.4
Sabra01G0108300 Salix brachista HOM05D007893 ORTHO05D010042 1.4e-08 66.2 150 26.0
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 2.4e-08 65.5 80 42.5
CARHR014470 Cardamine hirsuta HOM05D004824 ORTHO05D017526 4.2e-08 64.7 156 30.8
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 4.2e-08 64.7 150 24.0
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 4.2e-08 64.7 150 24.0
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 4.2e-08 64.7 183 26.2
Potri.001G139300 Populus trichocarpa HOM05D007893 ORTHO05D010042 5.4e-08 64.3 150 25.3
Atru.chr11.1049 Acer truncatum HOM05D007496 ORTHO05D009479 7.1e-08 63.9 152 30.3
Carub.0001s1351 Capsella rubella HOM05D004824 ORTHO05D003903 7.1e-08 63.9 94 41.5
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 7.1e-08 63.9 59 52.5
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 9.3e-08 63.5 133 26.3
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 9.3e-08 63.5 95 37.9
GSVIVG01013113001 Vitis vinifera HOM05D007893 ORTHO05D010042 1.6e-07 62.8 150 24.0
Atru.chr2.2027 Acer truncatum HOM05D007893 ORTHO05D010042 2.1e-07 62.4 221 24.0
Atru.chr2.2039 Acer truncatum HOM05D007893 ORTHO05D010042 2.1e-07 62.4 221 24.0
Nitab4.5_0000256g0090 Nicotiana tabacum HOM05D007893 ORTHO05D010042 2.1e-07 62.4 150 24.7
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 2.1e-07 62.4 170 25.3
Sed0014013 Sechium edule HOM05D007893 ORTHO05D010042 2.7e-07 62.0 150 25.3
Thecc.03G306900 Theobroma cacao HOM05D007893 ORTHO05D010042 3.5e-07 61.6 151 22.5
Sc22g0001680 Simmondsia chinensis HOM05D007893 ORTHO05D010042 4.6e-07 61.2 206 23.8
Lalb_Chr08g0231971 Lupinus albus HOM05D007893 ORTHO05D010042 6.0e-07 60.8 150 23.3
EL10Ac6g15406 Beta vulgaris HOM05D007496 ORTHO05D009479 1.0e-06 60.1 151 31.8
Glyma.18G262450 Glycine max HOM05D004824 ORTHO05D003903 1.0e-06 60.1 47 63.8
arahy.Tifrunner.gnm1.ann1.7C2XF6 Arachis hypogaea HOM05D007893 ORTHO05D010042 1.3e-06 59.7 151 23.2
arahy.Tifrunner.gnm1.ann1.AUE0A3 Arachis hypogaea HOM05D007893 ORTHO05D010042 1.3e-06 59.7 151 23.2
Migut.O00264 Erythranthe guttata HOM05D007893 ORTHO05D010042 1.7e-06 59.3 212 23.1
Rhsim09G0071100 Rhododendron simsii HOM05D007496 ORTHO05D009479 1.7e-06 59.3 152 29.6
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 1.7e-06 59.3 66 40.9
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 3.0e-06 58.5 161 25.5
SHI49399 Sapria himalayana HOM05D008459 ORTHO05D003903 6.6e-06 57.4 220 24.1
CAN.G904.35 Capsicum annuum HOM05D001621 ORTHO05D002172 8.7e-06 57.0 47 68.1
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 8.7e-06 57.0 152 28.3
Lj7A473T51 Lonicera japonica HOM05D007893 ORTHO05D010042 8.7e-06 57.0 129 26.4
Lj4g0018028 Lotus japonicus HOM05D007496 ORTHO05D009479 8.7e-06 57.0 152 28.3
Nitab4.5_0000383g0080 Nicotiana tabacum HOM05D001621 ORTHO05D002172 8.7e-06 57.0 47 68.1
Peaxi162Scf00692g00316 Petunia axillaris HOM05D001621 ORTHO05D002172 8.7e-06 57.0 47 68.1
Solyc10g007390.3 Solanum lycopersicum HOM05D001621 ORTHO05D002172 8.7e-06 57.0 47 68.1
Sopen10g003220 Solanum pennellii HOM05D001621 ORTHO05D002172 8.7e-06 57.0 47 68.1
PGSC0003DMG400021258 Solanum tuberosum HOM05D001621 ORTHO05D002172 8.7e-06 57.0 47 68.1


User provided reference genes

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