Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000131g0100 Nicotiana tabacum HOM05D000921 ORTHO05D004782 0.0e+00 2793.8 1422 100.0
Nitab4.5_0002391g0010 Nicotiana tabacum HOM05D000921 ORTHO05D004782 0.0e+00 2563.5 1454 91.4
Sopen04g030240 Solanum pennellii HOM05D000921 ORTHO05D004782 0.0e+00 2330.8 1618 76.8
CAN.G475.8 Capsicum annuum HOM05D000921 ORTHO05D004782 0.0e+00 2288.8 1621 76.2
Peaxi162Scf00454g00119 Petunia axillaris HOM05D000921 ORTHO05D004782 0.0e+00 2228.8 1616 74.9
Solyc04g076500.4 Solanum lycopersicum HOM05D000921 ORTHO05D004782 0.0e+00 1839.7 1344 74.2
Actinidia19246 Actinidia chinensis HOM05D000921 ORTHO05D004782 0.0e+00 1589.7 1637 56.1
GSVIVG01009194001 Vitis vinifera HOM05D000921 ORTHO05D004782 0.0e+00 1559.3 1658 54.5
TAR381G0975 Trochodendron aralioides HOM05D000921 ORTHO05D004782 0.0e+00 1552.0 1645 54.3
QL09p018095 Quercus lobata HOM05D000921 ORTHO05D004782 0.0e+00 1531.9 1642 53.4
Thecc.08G072600 Theobroma cacao HOM05D000921 ORTHO05D004782 0.0e+00 1520.4 1639 54.4
CiPaw.07G164000 Carya illinoinensis HOM05D000921 ORTHO05D004782 0.0e+00 1518.1 1639 53.2
Dinv42602 Davidia involucrata HOM05D000921 ORTHO05D004782 0.0e+00 1508.0 1640 53.9
Manes.18G056822 Manihot esculenta HOM05D000921 ORTHO05D004782 0.0e+00 1502.3 1644 53.2
Prupe.1G534000 Prunus persica HOM05D000921 ORTHO05D004782 0.0e+00 1501.9 1646 52.7
TWI56G0737 Tripterygium wilfordii HOM05D000921 ORTHO05D004782 0.0e+00 1500.7 1640 53.0
Potri.002G111000 Populus trichocarpa HOM05D000921 ORTHO05D004782 0.0e+00 1498.4 1641 53.0
Atru.chr13.992 Acer truncatum HOM05D000921 ORTHO05D004782 0.0e+00 1491.5 1637 52.4
Nn5g29852 Nelumbo nucifera HOM05D000921 ORTHO05D004782 0.0e+00 1482.6 1646 52.2
Haze_22475 Corylus avellana HOM05D000921 ORTHO05D004782 0.0e+00 1475.3 1639 52.8
Ciclev10000002m.g Citrus clementina HOM05D000921 ORTHO05D004782 0.0e+00 1468.8 1649 51.9
Rhsim06G0071200 Rhododendron simsii HOM05D000921 ORTHO05D004782 0.0e+00 1468.4 1737 50.9
MD15G1387600 Malus domestica HOM05D000921 ORTHO05D004782 0.0e+00 1468.0 1344 59.3
CANSAT54G2772 Cannabis sativa HOM05D000921 ORTHO05D004782 0.0e+00 1467.2 1336 59.6
Eucgr.F00430 Eucalyptus grandis HOM05D000921 ORTHO05D004782 0.0e+00 1466.8 1562 53.6
Migut.N02862 Erythranthe guttata HOM05D000921 ORTHO05D004782 0.0e+00 1461.0 1319 60.3
COL.COLO4_35265 Corchorus olitorius HOM05D000921 ORTHO05D004782 0.0e+00 1459.9 1743 50.8
Gorai.005G097000 Gossypium raimondii HOM05D000921 ORTHO05D004782 0.0e+00 1459.9 1639 51.9
Aqoxy6G00846 Aquilegia oxysepala HOM05D000921 ORTHO05D004782 0.0e+00 1452.6 1638 51.5
Gohir.D02G086100 Gossypium hirsutum HOM05D000921 ORTHO05D004782 0.0e+00 1452.2 1639 51.4
MSTRG.24432 Avicennia marina HOM05D000921 ORTHO05D004782 0.0e+00 1445.6 1626 51.5
RcHm_v2.0_Chr7g0235181 Rosa chinensis HOM05D000921 ORTHO05D004782 0.0e+00 1437.6 1644 51.3
Lsat_1_v5_gn_6_107401 Lactuca sativa HOM05D000921 ORTHO05D004782 0.0e+00 1429.8 1629 51.0
FvH4_5g34530 Fragaria vesca HOM05D000921 ORTHO05D004782 0.0e+00 1429.5 1647 50.8
PGR042G3444 Punica granatum HOM05D000921 ORTHO05D004782 0.0e+00 1422.5 1640 50.7
Sabra02G0087600 Salix brachista HOM05D000921 ORTHO05D004782 0.0e+00 1422.5 1336 58.5
HanXRQChr05g0163481 Helianthus annuus HOM05D000921 ORTHO05D004782 0.0e+00 1417.9 1622 51.1
FAN13G0958 Fragaria x ananassa HOM05D000921 ORTHO05D004782 0.0e+00 1411.7 1632 50.9
SGA_v2.0_scaffold28G11888 Striga asiatica HOM05D000921 ORTHO05D004782 0.0e+00 1411.7 1323 59.0
Duzib116G0480 Durio zibethinus HOM05D000921 ORTHO05D004782 0.0e+00 1407.1 1647 51.1
Medtr3g100060 Medicago truncatula HOM05D000921 ORTHO05D004782 0.0e+00 1397.5 1645 50.1
Glyma.04G096100 Glycine max HOM05D000921 ORTHO05D004782 0.0e+00 1388.2 1652 49.6
Glyma.06G097800 Glycine max HOM05D000921 ORTHO05D004782 0.0e+00 1387.5 1664 49.7
DCAR_012852 Daucus carota HOM05D000921 ORTHO05D004782 0.0e+00 1379.4 1630 50.2
Lj1g0023313 Lotus japonicus HOM05D000921 ORTHO05D004782 0.0e+00 1375.5 1646 49.5
TPR.G6323 Trifolium pratense HOM05D000921 ORTHO05D004782 0.0e+00 1364.4 1640 48.8
MELO3C003512.2 Cucumis melo HOM05D000921 ORTHO05D004782 0.0e+00 1364.0 1325 55.5
Hund26819 Selenicereus undatus HOM05D000921 ORTHO05D004782 0.0e+00 1364.0 1323 55.4
Psat5g049440 Pisum sativum HOM05D000921 ORTHO05D004782 0.0e+00 1363.2 1639 48.8
Lalb_Chr23g0270001 Lupinus albus HOM05D000921 ORTHO05D004782 0.0e+00 1362.1 1650 49.6
Ca_16011_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004782 0.0e+00 1360.1 1670 48.8
ECA246G1489 Erigeron canadensis HOM05D000921 ORTHO05D004782 0.0e+00 1357.4 1634 48.9
Phvul.009G035500 Phaseolus vulgaris HOM05D000921 ORTHO05D004782 0.0e+00 1355.9 1655 49.1
arahy.Tifrunner.gnm1.ann1.YNEA8K Arachis hypogaea HOM05D000921 ORTHO05D004782 0.0e+00 1345.9 1692 47.9
AUR62019100 Chenopodium quinoa HOM05D000921 ORTHO05D004782 0.0e+00 1323.9 1690 47.2
EL10Ac1g00502 Beta vulgaris HOM05D000921 ORTHO05D004782 0.0e+00 1299.3 1601 47.8
DCAR_019322 Daucus carota HOM05D000921 ORTHO05D004782 0.0e+00 1287.3 1644 46.7
CsaV3_3G048070 Cucumis sativus L. HOM05D000921 ORTHO05D004782 0.0e+00 1286.2 1315 53.5
FAN18G1361 Fragaria x ananassa HOM05D000921 ORTHO05D004782 0.0e+00 1285.0 1652 47.5
Sc06g0003790 Simmondsia chinensis HOM05D000921 ORTHO05D004782 0.0e+00 1246.5 1646 45.9
ClCG11G014650 Citrullus lanatus HOM05D000921 ORTHO05D004782 0.0e+00 1245.7 1656 45.7
FAN08G1747 Fragaria x ananassa HOM05D000921 ORTHO05D004782 0.0e+00 1228.8 1653 46.2
AUR62014358 Chenopodium quinoa HOM05D000921 ORTHO05D004782 0.0e+00 1205.3 1658 45.6
MD08G1200600 Malus domestica HOM05D000921 ORTHO05D004782 0.0e+00 1201.8 1115 58.2
Cc10_g08460 Coffea canephora HOM05D000921 ORTHO05D004782 0.0e+00 1198.0 1254 54.9
ATR0767G173 Amborella trichopoda HOM05D000921 ORTHO05D004782 0.0e+00 1184.5 1608 44.9
Gohir.A06G031500 Gossypium hirsutum HOM05D000921 ORTHO05D004782 0.0e+00 1160.2 1342 51.3
Ah.05g171400 Amaranthus hybridus HOM05D000921 ORTHO05D004782 0.0e+00 1159.4 1485 46.2
Zm00001eb207540 Zea mays HOM05D000921 ORTHO05D004782 0.0e+00 1144.8 1338 47.8
Lj4C739G4 Lonicera japonica HOM05D000921 ORTHO05D004782 0.0e+00 1119.4 1344 50.2
Oeu028591.1 Olea europaea HOM05D000921 ORTHO05D004782 4.3e-302 1042.0 1318 48.6
Sed0023880 Sechium edule HOM05D000921 ORTHO05D004782 1.3e-290 1003.8 1209 48.6
CDE02G0144 Ceratophyllum demersum HOM05D000921 ORTHO05D004782 2.6e-283 979.5 1628 39.3
Gohir.D06G030700 Gossypium hirsutum HOM05D000921 ORTHO05D004782 5.0e-282 975.3 977 56.0
Gorai.010G033700 Gossypium raimondii HOM05D000921 ORTHO05D004782 1.4e-281 973.8 978 55.9
unitig_578.g16055 Utricularia gibba HOM05D000921 ORTHO05D004782 9.7e-278 961.1 1325 44.5
vmacro21345 Vaccinium macrocarpon HOM05D000921 ORTHO05D004782 1.8e-271 940.3 997 54.3
CSS0003023 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004782 4.7e-264 915.6 933 55.9
AagrBONN_evm.TU.Sc2ySwM_117.180 Anthoceros agrestis HOM05D000921 ORTHO05D004782 1.0e-247 861.3 1403 38.0
HPP92_013154 Vanilla planifolia HOM05D000921 ORTHO05D004782 9.2e-244 848.2 1117 45.9
Mapoly0001s0542 Marchantia polymorpha HOM05D000921 ORTHO05D004782 1.0e-239 834.7 1449 36.6
Aa31LG2G10910 Aethionema arabicum HOM05D000921 ORTHO05D004782 6.0e-235 818.9 989 48.0
AT1G58230 Arabidopsis thaliana HOM05D000921 ORTHO05D004782 2.8e-232 810.1 978 48.5
AL2G18210 Arabidopsis lyrata HOM05D000921 ORTHO05D004782 2.6e-230 803.5 996 47.3
Carub.0002s0634 Capsella rubella HOM05D000921 ORTHO05D004782 1.9e-228 797.3 975 48.0
Sp2g05370 Schrenkiella parvula HOM05D000921 ORTHO05D004782 2.4e-228 797.0 983 47.4
Pp3c20_23460 Physcomitrium patens HOM05D000921 ORTHO05D004782 4.6e-227 792.7 1429 35.8
Thhalv10023210m.g Eutrema salsugineum HOM05D000921 ORTHO05D004782 6.0e-227 792.3 990 46.7
BcaNung06615 Brassica carinata HOM05D000921 ORTHO05D004782 1.0e-226 791.6 990 47.2
C01p35890 Brassica napus HOM05D000921 ORTHO05D004782 3.0e-226 790.0 981 47.4
BolC1t03548H Brassica oleracea HOM05D000921 ORTHO05D004782 8.6e-226 788.5 990 47.2
BraA01t02962Z Brassica rapa HOM05D000921 ORTHO05D004782 1.1e-223 781.6 976 47.4
A01p28340 Brassica napus HOM05D000921 ORTHO05D004782 2.3e-223 780.4 967 47.4
CARHR053760 Cardamine hirsuta HOM05D000921 ORTHO05D004782 8.9e-223 778.5 990 46.2
Cpa.g.sc21.32 Carica papaya HOM05D000921 ORTHO05D004782 9.0e-175 619.0 706 51.8
SEGI_30803 Sequoiadendron giganteum HOM05D000921 ORTHO05D004782 3.8e-165 587.0 802 43.1
Gohir.A02G078900 Gossypium hirsutum HOM05D000921 ORTHO05D004782 2.0e-158 564.7 683 48.2
Cpa.g.sc21.33 Carica papaya HOM05D000921 ORTHO05D004782 1.0e-154 552.4 711 47.8
VMungo1309G2985 Vigna mungo HOM05D000921 ORTHO05D004782 3.4e-145 520.8 695 46.5
CBR_g9089 Chara braunii HOM05D000921 ORTHO05D004782 4.0e-138 497.3 701 39.1
SMO169G0155 Selaginella moellendorffii HOM05D000921 ORTHO05D004782 4.4e-129 467.2 557 44.9
Os02g0162766 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004782 2.3e-122 444.9 695 40.3
THA.LOC104816792 Tarenaya hassleriana HOM05D000921 ORTHO05D004782 7.1e-111 406.8 303 64.7
Cc10_g08450 Coffea canephora HOM05D000921 ORTHO05D004782 2.7e-110 404.8 386 58.0
vmacro21344 Vaccinium macrocarpon HOM05D000921 ORTHO05D004782 2.0e-105 388.7 542 46.7
Gohir.D06G030750 Gossypium hirsutum HOM05D000921 ORTHO05D004782 1.1e-100 372.9 384 56.0
Gorai.010G033800 Gossypium raimondii HOM05D000921 ORTHO05D004782 7.3e-100 370.2 384 55.2
THA.LOC109116813 Tarenaya hassleriana HOM05D000921 ORTHO05D004782 1.2e-99 369.4 351 56.4
Os06g0678700 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004782 5.1e-85 320.9 569 37.1
Gohir.A02G078801 Gossypium hirsutum HOM05D000921 ORTHO05D004782 1.9e-71 275.8 300 51.7
HanXRQChr16g0501971 Helianthus annuus HOM05D000921 ORTHO05D004782 1.5e-65 256.1 190 66.8
Sed0001609 Sechium edule HOM05D000921 ORTHO05D004782 1.9e-63 249.2 303 49.2
Lj4A739G26 Lonicera japonica HOM05D000921 ORTHO05D004782 4.3e-60 238.0 268 52.2
MD08G1200500 Malus domestica HOM05D000921 ORTHO05D004782 5.5e-55 221.1 199 57.3
CBR_g40583 Chara braunii HOM05D000921 ORTHO05D004782 1.7e-43 183.0 403 33.0
Ah.05g171390 Amaranthus hybridus HOM05D000921 ORTHO05D004782 3.1e-42 178.7 203 49.3
HPP92_013164 Vanilla planifolia HOM05D000921 ORTHO05D004782 5.0e-40 171.4 408 33.3
SEGI_39738 Sequoiadendron giganteum HOM05D000921 ORTHO05D004782 2.6e-36 159.1 156 51.9
PRCOL_00007064 Prasinoderma coloniale HOM05D000921 ORTHO05D004782 2.0e-33 149.4 501 25.1
CSS0012885 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004782 3.0e-29 135.6 308 36.4
arahy.Tifrunner.gnm1.ann1.KCR83B Arachis hypogaea HOM05D000921 ORTHO05D004782 1.1e-26 127.1 184 41.3
Zm00001eb074430 Zea mays HOM05D000921 ORTHO05D002852 1.0e-21 110.5 334 25.7
Psat3g104040 Pisum sativum HOM05D000921 ORTHO05D002852 5.2e-21 108.2 340 25.6
Os04g0555600 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 8.8e-21 107.5 334 25.1
ClCG05G002030 Citrullus lanatus HOM05D000921 ORTHO05D002852 2.6e-20 105.9 340 25.3
HanXRQChr03g0093641 Helianthus annuus HOM05D000921 ORTHO05D002852 2.6e-20 105.9 310 25.2
Dinv32396 Davidia involucrata HOM05D000921 ORTHO05D002852 3.4e-20 105.5 340 25.0
AL5G43240 Arabidopsis lyrata HOM05D000921 ORTHO05D002852 7.5e-20 104.4 332 25.9
Gohir.A11G082900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 7.5e-20 104.4 350 24.9
TPR.G37773 Trifolium pratense HOM05D000921 ORTHO05D002852 7.5e-20 104.4 340 25.0
MELO3C006169.2 Cucumis melo HOM05D000921 ORTHO05D002852 9.8e-20 104.0 340 25.0
Gohir.D11G087000 Gossypium hirsutum HOM05D000921 ORTHO05D002852 9.8e-20 104.0 350 24.6
Ca_07837_v3 Cicer arietinum L. HOM05D000921 ORTHO05D002852 1.3e-19 103.6 341 25.5
Gorai.007G092900 Gossypium raimondii HOM05D000921 ORTHO05D002852 1.3e-19 103.6 350 24.6
Medtr7g075660 Medicago truncatula HOM05D000921 ORTHO05D002852 1.3e-19 103.6 340 24.7
BraA04t15853Z Brassica rapa HOM05D000921 ORTHO05D002852 1.7e-19 103.2 326 24.8
A04p01340 Brassica napus HOM05D000921 ORTHO05D002852 2.2e-19 102.8 326 24.8
Os02g0663300 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D002852 2.8e-19 102.4 347 25.9
Sc26g0001150 Simmondsia chinensis HOM05D000921 ORTHO05D002852 3.7e-19 102.1 340 24.1
MD02G1199600 Malus domestica HOM05D000921 ORTHO05D002852 4.9e-19 101.7 382 23.6
Zm00001eb249850 Zea mays HOM05D000921 ORTHO05D002852 4.9e-19 101.7 328 24.7
Gohir.D08G042932 Gossypium hirsutum HOM05D000921 ORTHO05D002852 6.3e-19 101.3 337 25.2
Gohir.D08G149700 Gossypium hirsutum HOM05D000921 ORTHO05D002852 1.1e-18 100.5 347 25.1
Gorai.004G155500 Gossypium raimondii HOM05D000921 ORTHO05D002852 1.1e-18 100.5 347 25.1
TAR636G1827 Trochodendron aralioides HOM05D000921 ORTHO05D002852 3.1e-18 99.0 344 23.8
Gohir.A08G031900 Gossypium hirsutum HOM05D000921 ORTHO05D002852 7.0e-18 97.8 350 24.9
Gorai.004G041500 Gossypium raimondii HOM05D000921 ORTHO05D002852 7.0e-18 97.8 350 24.9
PSO478G4503 Papaver somniferum HOM05D000921 ORTHO05D002852 7.0e-18 97.8 351 23.9
PSO782G1119 Papaver somniferum HOM05D000921 ORTHO05D002852 7.0e-18 97.8 351 24.2
Oeu029683.1 Olea europaea HOM05D000921 ORTHO05D002852 9.2e-18 97.4 340 24.7
CDE11G1134 Ceratophyllum demersum HOM05D000921 ORTHO05D002852 1.6e-17 96.7 348 24.1
Actinidia09569 Actinidia chinensis HOM05D000921 ORTHO05D002852 3.5e-17 95.5 341 24.9
Lj7C526G8 Lonicera japonica HOM05D000921 ORTHO05D002852 1.0e-16 94.0 305 26.6
SHI13503 Sapria himalayana HOM05D000921 ORTHO05D002852 1.3e-16 93.6 348 24.4
HPP92_009978 Vanilla planifolia HOM05D000921 ORTHO05D002852 1.3e-16 93.6 337 22.3
Nn6g34350 Nelumbo nucifera HOM05D000921 ORTHO05D002852 1.7e-16 93.2 350 24.0
HPP92_013163 Vanilla planifolia HOM05D000921 ORTHO05D004782 3.8e-16 92.0 105 43.8
arahy.Tifrunner.gnm1.ann1.FVGU3J Arachis hypogaea HOM05D000921 ORTHO05D002852 5.0e-16 91.7 345 24.1
Glyma.03G021400 Glycine max HOM05D000921 ORTHO05D002852 5.0e-16 91.7 338 23.4
arahy.Tifrunner.gnm1.ann1.UYJG1L Arachis hypogaea HOM05D000921 ORTHO05D002852 6.6e-16 91.3 345 24.1
SMO347G0262 Selaginella moellendorffii HOM05D000921 ORTHO05D002852 1.9e-15 89.7 334 23.4
Hma1.2p1_0125F.1_g058740 Hydrangea macrophylla HOM05D000921 ORTHO05D004782 4.3e-15 88.6 63 69.8
Nn8g40360 Nelumbo nucifera HOM05D000921 ORTHO05D004782 7.3e-15 87.8 76 52.6
CBR_g26195 Chara braunii HOM05D000921 ORTHO05D002852 9.5e-15 87.4 291 24.1
Pp3c8_11180 Physcomitrium patens HOM05D000921 ORTHO05D002852 1.6e-14 86.7 511 22.7
Cpa.g.sc474.1 Carica papaya HOM05D000921 ORTHO05D004782 2.8e-14 85.9 73 58.9
Nn1g04217 Nelumbo nucifera HOM05D001236 ORTHO05D001090 6.1e-14 84.7 72 55.6
Sc07g0005290 Simmondsia chinensis HOM05D000921 ORTHO05D004782 1.4e-13 83.6 245 32.7
Gohir.A08G128400 Gossypium hirsutum HOM05D000921 ORTHO05D002852 5.2e-13 81.6 240 25.8
CSS0006749 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004782 1.5e-12 80.1 149 35.6
DCAR_006882 Daucus carota HOM05D000921 ORTHO05D002852 6.4e-11 74.7 241 24.9
Lsat_1_v5_gn_7_57640 Lactuca sativa HOM05D000783 ORTHO05D015970 9.2e-10 70.9 109 37.6
Zm00001eb273760 Zea mays HOM05D000921 ORTHO05D004782 2.0e-09 69.7 63 52.4
AagrBONN_evm.TU.Sc2ySwM_117.1900 Anthoceros agrestis HOM05D000921 ORTHO05D004153 3.9e-08 65.5 366 21.9
SEGI_18450 Sequoiadendron giganteum HOM05D000921 ORTHO05D004153 8.6e-08 64.3 406 22.7
CSS0044468 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004782 2.1e-06 59.7 43 69.8


User provided reference genes

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