Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.5e-242 840.9 441 100.0
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.6e-210 734.6 414 93.2
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 7.9e-186 654.1 446 78.7
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 2.1e-183 646.0 444 78.4
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 2.1e-183 646.0 447 78.3
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 6.2e-183 644.4 444 78.6
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 4.2e-171 605.1 419 73.7
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 4.3e-168 595.1 393 75.6
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 2.2e-159 566.2 389 79.2
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 1.8e-137 493.4 401 64.1
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 3.1e-134 482.6 407 61.9
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 6.5e-132 474.9 451 58.5
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 3.2e-131 472.6 353 68.8
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 1.6e-130 470.3 394 59.6
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 2.1e-130 469.9 387 60.5
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 6.1e-130 468.4 395 60.0
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 4.5e-125 452.2 315 71.7
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.7e-124 450.3 448 56.2
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.9e-123 446.8 396 58.6
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 8.9e-121 438.0 412 57.5
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 4.4e-120 435.6 390 59.7
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 9.8e-120 434.5 407 53.8
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 8.3e-119 431.4 394 58.4
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 1.1e-118 431.0 392 58.9
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 4.1e-118 429.1 394 58.4
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 2.0e-117 426.8 390 57.9
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 2.7e-117 426.4 427 54.3
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 7.3e-115 418.3 407 54.5
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 1.2e-114 417.5 440 50.0
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 3.6e-114 416.0 390 57.9
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 6.1e-114 415.2 406 54.7
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 9.8e-112 407.9 424 51.2
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 1.4e-110 404.1 393 54.7
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 7.8e-109 398.3 389 53.0
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 1.7e-108 397.1 392 53.8
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 3.0e-108 396.4 396 51.8
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 3.9e-108 396.0 393 53.4
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 3.9e-108 396.0 421 51.1
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 8.6e-108 394.8 395 53.2
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.1e-107 394.4 392 53.8
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 3.3e-107 392.9 414 53.9
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 5.6e-107 392.1 385 54.3
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 6.8e-105 385.2 401 52.4
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 6.8e-105 385.2 432 50.5
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 2.0e-104 383.6 440 49.3
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 3.4e-104 382.9 393 52.7
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 9.8e-104 381.3 395 51.6
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 2.9e-103 379.8 460 47.2
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 8.3e-103 378.3 519 45.1
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.1e-102 377.9 420 49.3
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 2.7e-101 373.2 396 52.0
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 4.6e-101 372.5 415 49.9
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 7.8e-101 371.7 480 47.3
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.0e-100 371.3 395 50.4
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 5.1e-100 369.0 391 50.4
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 6.6e-100 368.6 395 50.6
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-99 367.9 395 50.1
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 1.5e-99 367.5 385 52.2
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.9e-99 367.1 395 49.6
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 3.3e-99 366.3 408 51.5
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 1.6e-98 364.0 484 46.3
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 3.1e-97 359.8 433 45.3
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 6.8e-97 358.6 409 48.7
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 1.5e-96 357.5 429 47.1
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 2.0e-96 357.1 441 46.3
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 5.8e-96 355.5 401 48.6
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.8e-96 355.5 422 46.7
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.7e-95 352.8 431 46.6
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.4e-94 350.1 435 46.4
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 1.2e-93 347.8 462 46.1
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 1.6e-93 347.4 442 45.5
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.1e-93 347.1 442 45.2
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 7.8e-93 345.1 350 54.3
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.0e-92 344.7 402 48.8
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 2.3e-92 343.6 434 46.3
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.3e-92 343.6 387 48.1
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 3.0e-92 343.2 451 44.8
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 1.9e-91 340.5 390 48.2
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 4.3e-91 339.3 415 46.7
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 5.6e-91 339.0 401 46.6
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 7.3e-91 338.6 409 45.2
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 6.2e-90 335.5 392 47.4
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 6.8e-89 332.0 404 48.5
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 8.9e-89 331.6 402 47.3
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 2.0e-88 330.5 389 46.5
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 2.0e-88 330.5 391 47.6
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 2.6e-88 330.1 447 44.7
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 6.4e-87 325.5 392 47.7
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 7.1e-86 322.0 434 41.7
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.2e-85 321.2 396 45.5
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 2.7e-85 320.1 400 45.5
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 4.6e-85 319.3 446 41.5
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 1.0e-84 318.2 407 42.8
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 2.1e-82 310.5 437 39.8
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 8.1e-82 308.5 455 40.4
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.1e-81 308.1 391 44.5
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 1.4e-81 307.8 390 44.4
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 1.4e-81 307.8 408 43.4
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 1.8e-81 307.4 603 34.0
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 2.4e-81 307.0 390 44.4
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 1.5e-80 304.3 393 45.0
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 4.4e-80 302.8 402 42.0
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 2.2e-79 300.4 401 45.1
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 1.2e-77 294.7 391 44.2
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 1.0e-76 291.6 391 41.9
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 1.0e-76 291.6 391 42.2
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 1.0e-76 291.6 391 41.9
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 1.0e-76 291.6 391 41.9
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 1.3e-76 291.2 391 42.2
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 6.9e-73 278.9 402 42.0
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 4.5e-72 276.2 304 48.4
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 7.9e-69 265.4 418 41.6
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 4.3e-67 259.6 429 38.9
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.1e-65 253.4 380 41.1
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.1e-57 228.4 308 44.8
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 3.1e-57 226.9 394 39.8
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 1.1e-54 218.4 297 43.8
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 2.1e-53 214.2 247 47.0
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 6.7e-52 209.1 218 48.2
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.2e-50 204.1 280 42.1
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 6.3e-50 202.6 434 35.0
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 1.1e-49 201.8 401 37.9
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 1.2e-48 198.4 350 37.1
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 1.3e-47 194.9 424 33.5
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 4.2e-46 189.9 234 44.0
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 2.8e-42 177.2 237 44.3
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.2e-40 171.8 235 40.0
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 3.4e-40 170.2 237 46.4
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.1e-38 165.2 305 39.0
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.4e-38 164.9 229 41.5
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.6e-37 161.4 363 32.5
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 1.4e-36 158.3 108 70.4
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 8.8e-36 155.6 320 37.5
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.7e-31 141.4 136 53.7
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 4.2e-30 136.7 332 32.8
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 9.4e-30 135.6 108 63.9
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.5e-27 128.3 401 29.9
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 4.4e-27 126.7 402 29.9
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 3.7e-26 123.6 443 27.5
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.1e-25 120.2 383 27.4
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.7e-24 117.5 173 41.6
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 3.5e-24 117.1 155 43.9
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 7.7e-24 115.9 149 45.6
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 2.9e-23 114.0 184 40.2
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 9.4e-22 109.0 142 43.7
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 2.6e-19 100.9 149 37.6
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.7e-18 98.2 166 38.6
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 2.8e-18 97.4 132 45.5
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.4e-17 94.4 141 36.9
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 1.2e-16 92.0 146 41.1
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 3.0e-12 77.4 124 36.3
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 2.8e-10 70.9 102 38.2
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 4.3e-06 57.0 116 32.8
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 4.3e-06 57.0 116 32.8


User provided reference genes

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