Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.1e-217 758.8 417 100.0
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 6.8e-171 604.4 412 86.4
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 2.5e-149 532.7 393 80.2
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 5.4e-144 515.0 400 78.0
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 2.9e-137 492.7 393 71.8
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 2.9e-137 492.7 393 72.5
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 2.7e-135 486.1 394 72.3
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 1.3e-134 483.8 403 70.0
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.7e-134 483.4 393 71.2
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.5e-133 480.3 393 71.5
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 7.3e-133 478.0 393 70.5
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.8e-132 476.1 393 71.8
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.2e-129 466.5 396 68.9
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.9e-128 463.4 393 69.0
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 7.1e-128 461.5 396 67.2
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 7.1e-128 461.5 391 69.1
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 1.2e-127 460.7 387 68.7
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 1.6e-127 460.3 392 67.9
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 4.6e-127 458.8 396 67.7
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 4.6e-127 458.8 393 68.7
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 4.6e-127 458.8 402 67.2
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 6.0e-127 458.4 394 68.3
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 6.0e-127 458.4 385 68.8
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.0e-126 457.6 393 67.2
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.3e-126 457.2 392 69.4
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.3e-126 457.2 414 66.9
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 3.9e-126 455.7 395 67.8
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 6.6e-126 454.9 393 68.4
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.6e-126 454.9 397 68.5
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 1.1e-125 454.1 393 67.9
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.9e-125 453.4 394 67.3
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 2.5e-125 453.0 393 69.2
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 5.6e-125 451.8 393 66.7
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 7.3e-125 451.4 393 66.9
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.3e-125 451.4 396 68.2
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 7.3e-125 451.4 394 66.8
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.6e-124 450.3 391 67.8
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 2.1e-124 449.9 397 68.0
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 2.1e-124 449.9 393 67.4
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.6e-124 449.1 396 68.2
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 4.7e-124 448.7 391 67.5
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 4.7e-124 448.7 395 67.3
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 6.2e-124 448.4 397 67.0
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.4e-123 447.2 393 66.4
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 1.4e-123 447.2 394 67.8
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.8e-123 446.8 394 67.0
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 2.4e-123 446.4 388 68.3
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 3.1e-123 446.0 388 68.3
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 3.1e-123 446.0 388 68.0
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 4.0e-123 445.7 396 68.7
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 5.2e-123 445.3 382 67.5
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 8.9e-123 444.5 403 67.0
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 8.9e-123 444.5 388 67.3
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.5e-122 443.7 388 66.8
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.0e-122 443.4 397 65.2
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 3.4e-122 442.6 393 65.4
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 5.8e-122 441.8 397 68.0
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 7.6e-122 441.4 395 66.8
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 1.3e-121 440.7 394 66.0
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.7e-121 440.3 397 67.8
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.8e-121 439.1 402 63.9
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 6.4e-121 438.3 388 67.3
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 6.4e-121 438.3 393 68.2
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 8.4e-121 438.0 394 66.0
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 8.4e-121 438.0 394 66.2
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 8.4e-121 438.0 394 67.5
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 8.4e-121 438.0 393 66.7
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.1e-120 437.6 397 68.0
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.9e-120 436.8 394 65.5
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 4.2e-120 435.6 394 65.5
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.4e-120 435.3 413 62.7
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 7.1e-120 434.9 388 67.8
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 9.3e-120 434.5 394 65.5
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 3.5e-119 432.6 393 64.4
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 6.0e-119 431.8 404 64.9
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.0e-118 431.0 393 66.4
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.9e-118 429.1 423 61.0
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 3.3e-117 426.0 393 64.1
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 4.3e-117 425.6 393 64.9
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 4.3e-117 425.6 356 70.2
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 3.6e-116 422.5 394 62.7
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 3.6e-116 422.5 401 62.8
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 6.2e-116 421.8 333 77.5
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 8.1e-116 421.4 395 65.8
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 3.1e-115 419.5 393 63.1
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.0e-115 419.1 369 68.0
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-114 417.5 396 63.1
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.5e-114 417.2 380 64.2
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 2.0e-114 416.8 382 63.6
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 3.4e-114 416.0 398 62.1
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 7.6e-114 414.8 394 63.5
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 7.6e-114 414.8 394 63.5
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 1.3e-113 414.1 394 63.7
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.1e-112 411.0 399 62.4
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 3.2e-112 409.5 364 66.2
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 3.2e-112 409.5 398 61.8
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 9.3e-112 407.9 394 61.9
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.6e-111 407.1 394 61.7
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 2.7e-111 406.4 388 63.9
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 4.6e-111 405.6 398 61.1
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 7.9e-111 404.8 364 65.7
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.8e-110 403.7 393 59.8
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 3.0e-110 402.9 395 62.5
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 6.7e-110 401.7 393 61.1
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.5e-109 400.6 393 63.4
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.3e-109 399.1 394 59.4
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 6.2e-108 395.2 394 59.1
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.8e-107 393.7 269 86.2
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.1e-100 370.2 333 66.4
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.0e-97 361.3 394 55.8
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 3.3e-93 346.3 330 62.7
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 4.3e-93 345.9 382 53.7
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 5.7e-93 345.5 416 55.0
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 8.2e-92 341.7 401 53.1
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 7.2e-88 328.6 259 74.1
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 6.7e-78 295.4 291 59.8
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.7e-76 290.8 374 54.0
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 1.4e-75 287.7 395 51.4
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 3.3e-69 266.5 261 62.8
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 3.3e-69 266.5 261 62.8
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 5.7e-69 265.8 219 68.9
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 4.1e-67 259.6 236 63.1
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 5.0e-65 252.7 398 44.5
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 9.7e-61 238.4 202 67.3
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.6e-58 231.1 337 44.2
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.7e-57 227.6 374 43.6
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.4e-54 218.0 178 73.0
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.4e-51 208.0 268 52.2
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 2.4e-51 207.2 396 37.4
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.2e-48 195.7 232 54.3
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.4e-35 152.9 149 59.1
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.3e-33 147.5 384 34.1
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 4.9e-28 129.8 412 29.9
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 1.1e-27 128.6 73 84.9
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.4e-27 127.5 77 83.1
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.5e-26 123.6 377 31.0
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.6e-26 123.2 73 83.6
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.4e-19 100.9 75 62.7
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 2.3e-17 94.4 82 62.2
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 2.8e-15 87.4 106 51.9
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 3.1e-14 84.0 202 37.1
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.4e-11 75.1 60 63.3
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.4e-11 75.1 60 63.3
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 2.1e-10 71.2 71 60.6
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.0e-10 69.7 60 60.0
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.5e-08 65.1 36 91.7
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 4.3e-08 63.5 50 74.0
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 7.3e-08 62.8 174 33.9
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 9.6e-08 62.4 59 61.0


User provided reference genes

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