Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 2.9e-192 676.0 656 100.0
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 2.2e-139 500.4 656 87.7
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 1.8e-125 454.1 657 63.8
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 5.0e-120 436.0 657 50.2
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 4.5e-105 386.3 599 49.2
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 1.2e-86 325.1 656 65.1
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 4.5e-60 236.9 624 62.8
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 9.0e-53 212.6 631 34.5
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 9.7e-39 166.0 671 32.9
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 2.4e-37 161.4 283 39.2
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 1.0e-35 156.0 660 26.7
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.3e-35 155.6 627 26.0
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 2.5e-34 151.4 627 26.0
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 4.6e-33 147.1 626 33.2
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 8.8e-32 142.9 664 48.3
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 2.0e-31 141.7 661 33.3
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 2.4e-29 134.8 658 30.9
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 3.8e-27 127.5 91 76.9
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 9.4e-26 122.9 663 29.1
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 3.6e-25 120.9 654 34.9
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 7.9e-25 119.8 134 55.2
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 6.7e-24 116.7 659 22.8
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 2.6e-23 114.8 137 51.8
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 5.7e-23 113.6 130 48.5
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 5.7e-23 113.6 659 36.9
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 7.4e-23 113.2 135 48.1
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.3e-22 112.5 675 28.1
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 4.8e-22 110.5 626 26.8
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 5.3e-21 107.1 134 45.5
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 1.6e-20 105.5 660 25.8
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 2.6e-20 104.8 283 30.4
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 3.8e-19 100.9 134 42.5
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 5.0e-19 100.5 674 36.4
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 8.5e-19 99.8 130 43.8
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 1.5e-18 99.0 755 27.3
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 1.9e-18 98.6 130 41.5
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 5.5e-18 97.1 132 43.2
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 5.5e-18 97.1 130 40.0
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 5.5e-18 97.1 127 42.5
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 7.2e-18 96.7 112 50.9
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 1.2e-17 95.9 124 44.4
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 2.1e-17 95.1 130 43.1
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 2.7e-17 94.7 134 41.0
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 3.6e-17 94.4 135 40.7
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 6.1e-17 93.6 133 41.4
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.4e-16 92.4 130 41.5
Peaxi162Scf00351g00530 Petunia axillaris HOM05D004923 ORTHO05D005940 1.8e-16 92.0 100 56.0
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 2.3e-16 91.7 130 38.5
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.3e-16 91.7 130 41.5
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 2.3e-16 91.7 131 37.4
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.0e-16 91.3 130 40.8
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 3.0e-16 91.3 131 37.4
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 3.0e-16 91.3 662 32.2
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 4.0e-16 90.9 131 37.4
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 8.8e-16 89.7 130 37.7
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 8.8e-16 89.7 275 30.2
CAN.G652.6 Capsicum annuum HOM05D004923 ORTHO05D005940 1.1e-15 89.4 74 67.6
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.1e-15 89.4 125 40.0
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.1e-15 89.4 125 40.0
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 1.5e-15 89.0 130 40.0
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 2.0e-15 88.6 125 40.0
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 2.6e-15 88.2 128 41.4
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 2.6e-15 88.2 127 37.8
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 4.4e-15 87.4 120 40.8
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 7.5e-15 86.7 134 40.3
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.3e-14 85.9 125 41.6
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 2.2e-14 85.1 77 58.4
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 6.3e-14 83.6 126 38.1
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 6.3e-14 83.6 278 32.4
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 6.3e-14 83.6 130 39.2
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 6.3e-14 83.6 130 39.2
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 8.2e-14 83.2 131 39.7
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 1.1e-13 82.8 126 38.1
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 1.4e-13 82.4 117 40.2
CAN.G213.13 Capsicum annuum HOM05D000181 ORTHO05D005940 2.4e-13 81.6 85 49.4
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 3.1e-13 81.3 126 37.3
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 4.1e-13 80.9 313 27.5
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 5.3e-13 80.5 105 42.9
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 5.3e-13 80.5 122 39.3
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 5.3e-13 80.5 120 37.5
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 7.0e-13 80.1 131 38.9
CAN.G909.12 Capsicum annuum HOM05D004923 ORTHO05D005940 2.0e-12 78.6 108 49.1
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 4.5e-12 77.4 130 40.0
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 5.9e-12 77.0 94 42.6
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 7.7e-12 76.6 664 39.0
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 7.7e-12 76.6 130 40.0
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.0e-11 76.3 114 40.4
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 1.3e-11 75.9 313 26.5
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 1.3e-11 75.9 661 21.5
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.7e-11 75.5 152 39.5
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 1.7e-11 75.5 119 35.3
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 2.9e-11 74.7 131 35.9
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 2.9e-11 74.7 131 37.4
Ah.04g159890 Amaranthus hybridus HOM05D004923 ORTHO05D005940 3.8e-11 74.3 72 56.9
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 3.8e-11 74.3 182 35.7
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 5.0e-11 73.9 91 40.7
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 8.5e-11 73.2 127 34.6
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 1.1e-10 72.8 128 38.3
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 1.1e-10 72.8 133 35.3
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 1.5e-10 72.4 119 34.5
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.5e-10 71.6 669 38.9
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 4.2e-10 70.9 163 35.6
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 5.5e-10 70.5 303 27.7
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 5.5e-10 70.5 722 23.0
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 5.5e-10 70.5 127 35.4
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 9.4e-10 69.7 118 41.5
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.6e-09 68.9 105 39.0
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 3.6e-09 67.8 129 35.7
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 4.7e-09 67.4 313 28.1
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 4.7e-09 67.4 313 28.1
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 4.7e-09 67.4 690 34.9
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 6.1e-09 67.0 333 28.5
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 8.0e-09 66.6 140 40.0
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 1.4e-08 65.9 171 33.9
Lsat_1_v5_gn_4_137721 Lactuca sativa HOM05D004923 ORTHO05D005940 1.8e-08 65.5 123 36.6
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 2.3e-08 65.1 290 27.9
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.3e-08 65.1 326 26.7
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 3.0e-08 64.7 82 42.7
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 8.8e-08 63.2 304 27.0
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.2e-07 62.8 329 26.7
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 1.5e-07 62.4 665 33.1
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 2.6e-07 61.6 299 27.8
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 4.4e-07 60.8 115 34.8
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 5.7e-07 60.5 147 36.1
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 5.7e-07 60.5 679 29.9
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 7.5e-07 60.1 676 43.0
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 9.8e-07 59.7 149 35.6
Actinidia00480 Actinidia chinensis HOM05D001349 ORTHO05D005940 2.2e-06 58.5 60 60.0
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 2.2e-06 58.5 116 34.5
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 2.2e-06 58.5 116 34.5
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 2.8e-06 58.2 122 27.9


User provided reference genes

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