Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 0.0e+00 1260.7 636 100.0
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 3.2e-289 998.0 646 76.9
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.4e-271 939.5 648 71.6
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 3.1e-268 928.3 645 71.3
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 6.1e-256 887.5 650 67.1
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 1.5e-254 882.9 653 67.1
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 5.7e-254 880.9 652 66.1
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 3.7e-253 878.2 652 66.0
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 9.4e-249 863.6 650 66.3
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 8.8e-247 857.1 646 64.9
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 1.2e-246 856.7 651 64.5
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 9.8e-246 853.6 648 66.2
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 1.4e-244 849.7 650 63.1
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 4.1e-244 848.2 654 64.5
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 9.1e-244 847.0 624 67.5
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 9.1e-244 847.0 627 66.5
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 2.9e-242 842.0 658 64.9
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 5.0e-242 841.3 649 65.3
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 1.2e-238 830.1 671 62.3
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 2.0e-238 829.3 644 64.1
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 5.7e-238 827.8 649 62.7
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 3.7e-237 825.1 649 64.1
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 3.7e-237 825.1 649 64.3
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 3.1e-236 822.0 641 63.3
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 4.5e-235 818.1 650 62.0
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 7.7e-235 817.4 645 62.3
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 9.5e-233 810.4 654 60.9
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 8.9e-231 803.9 646 61.6
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.5e-230 803.1 652 62.4
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 7.5e-230 800.8 653 61.7
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 7.5e-230 800.8 651 61.8
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 9.8e-230 800.4 646 61.3
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 1.3e-229 800.0 636 63.1
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 2.2e-229 799.3 641 62.6
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 2.2e-229 799.3 646 61.1
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 2.2e-229 799.3 651 62.5
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 2.4e-228 795.8 652 62.0
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 4.1e-228 795.0 650 61.1
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 7.0e-228 794.3 657 60.1
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 2.3e-226 789.3 653 60.8
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 1.1e-225 786.9 655 60.6
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 2.5e-225 785.8 640 62.2
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 7.3e-225 784.3 642 61.2
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 9.5e-225 783.9 646 61.1
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 1.2e-224 783.5 650 60.9
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 2.1e-224 782.7 654 60.4
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 2.8e-224 782.3 640 62.2
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 4.0e-223 778.5 636 61.8
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 1.5e-222 776.5 649 61.0
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 8.3e-221 770.8 646 60.7
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 8.3e-221 770.8 653 59.9
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.1e-220 770.4 651 59.1
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 1.1e-220 770.4 652 60.0
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.4e-220 770.0 647 59.5
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 5.4e-220 768.1 646 59.1
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 2.7e-219 765.8 641 61.9
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 4.6e-219 765.0 645 59.7
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 4.6e-219 765.0 654 60.1
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 1.3e-218 763.5 645 59.7
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 4.3e-217 758.4 645 59.2
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 5.6e-217 758.1 643 58.2
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 6.2e-216 754.6 657 58.6
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.1e-215 753.8 651 58.2
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 2.3e-215 752.7 646 59.4
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 3.1e-215 752.3 654 57.5
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.1e-215 752.3 651 58.1
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 3.1e-215 752.3 657 58.0
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 3.1e-215 752.3 652 57.8
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 4.0e-215 751.9 649 58.6
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 2.9e-213 745.7 644 58.4
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 1.1e-212 743.8 642 58.1
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 5.4e-212 741.5 634 60.9
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 7.1e-212 741.1 652 58.0
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 9.2e-212 740.7 642 58.1
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 2.1e-211 739.6 642 58.1
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 3.5e-211 738.8 646 57.6
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 3.5e-211 738.8 646 57.6
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 6.0e-211 738.0 652 57.8
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 7.8e-211 737.6 647 57.0
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.7e-210 736.5 651 58.1
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.5e-209 733.4 665 55.9
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 7.6e-206 721.1 644 56.5
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 6.4e-205 718.0 643 56.8
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 7.1e-204 714.5 651 55.5
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 5.1e-202 708.4 644 55.3
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 8.1e-200 701.0 655 54.0
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 2.4e-199 699.5 646 54.0
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 2.2e-197 693.0 640 57.0
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 5.4e-196 688.3 645 55.5
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.6e-195 686.8 655 54.0
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 4.3e-193 678.7 652 53.5
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.1e-191 674.1 650 52.3
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 9.9e-190 667.5 650 52.5
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 3.3e-185 652.5 683 49.3
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 1.0e-178 630.9 647 50.9
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.3e-178 630.6 485 63.5
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 3.0e-178 629.4 503 63.0
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 9.0e-175 617.8 657 49.0
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 1.0e-173 614.4 651 49.2
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 1.5e-161 573.9 471 60.7
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 1.4e-159 567.4 601 52.2
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 7.2e-140 501.9 410 62.0
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 7.5e-137 491.9 519 48.6
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 3.7e-128 463.0 332 69.3
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 4.0e-122 443.0 664 39.5
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 6.3e-120 435.6 336 64.0
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 9.8e-105 385.2 628 35.0
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 3.6e-99 366.7 654 35.3
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.0e-93 348.6 497 39.8
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 3.5e-86 323.6 357 46.5
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 4.3e-84 316.6 269 55.4
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.2e-81 308.5 284 52.5
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 2.8e-75 287.3 742 28.6
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 1.2e-65 255.4 699 27.9
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 1.4e-63 248.4 355 39.4
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 5.5e-63 246.5 269 46.8
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 6.2e-59 233.0 261 47.5
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 3.0e-45 187.6 220 47.7
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 5.2e-29 133.7 127 56.7
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 4.4e-28 130.6 81 70.4
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 8.2e-27 126.3 235 32.8
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 2.9e-24 117.9 206 32.0
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.5e-23 115.5 76 71.1
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.1e-22 111.7 101 47.5
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 3.6e-22 110.9 101 58.4
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 8.0e-22 109.8 227 33.0
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.3e-21 108.2 76 68.4
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.6e-20 104.8 86 48.8
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 3.7e-19 100.9 212 32.5
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.6e-17 95.5 64 71.9
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 7.7e-17 93.2 162 33.3
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.1e-15 89.4 88 52.3
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 6.3e-11 73.6 51 70.6
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 2.4e-10 71.6 89 40.4
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 1.6e-09 68.9 74 45.9


User provided reference genes

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