Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.3e-125 452.6 290 100.0
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 1.2e-97 360.5 281 86.5
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 4.2e-95 352.1 284 83.8
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 1.8e-93 346.7 290 82.4
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.7e-88 330.1 283 80.2
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 6.5e-88 328.2 288 77.4
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.4e-87 327.0 286 78.3
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.2e-87 325.5 280 78.9
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.5e-87 325.1 280 78.9
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.6e-86 323.6 283 78.4
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.6e-86 323.6 283 78.4
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 2.1e-86 323.2 282 78.7
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.0e-85 320.9 278 79.1
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 1.8e-85 320.1 290 76.2
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 5.2e-85 318.5 289 76.5
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 8.8e-85 317.8 283 76.7
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 2.6e-84 316.2 291 75.9
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 3.3e-84 315.8 289 77.2
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 5.7e-84 315.1 286 75.2
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 5.7e-84 315.1 277 75.8
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 9.7e-84 314.3 285 76.8
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.8e-83 312.0 279 77.1
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.4e-82 310.5 282 74.8
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.1e-82 308.9 286 76.6
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 4.1e-82 308.9 292 75.3
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 5.3e-82 308.5 283 76.0
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 1.6e-81 307.0 290 74.1
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 2.6e-81 306.2 281 75.1
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.5e-81 305.8 280 74.3
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 4.5e-81 305.4 283 74.9
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 4.5e-81 305.4 283 73.5
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 5.9e-81 305.1 283 75.6
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 7.7e-81 304.7 283 75.3
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 7.7e-81 304.7 283 75.3
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.0e-80 304.3 281 75.8
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 2.9e-80 302.8 280 75.4
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 2.9e-80 302.8 281 74.7
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 5.0e-80 302.0 288 72.6
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.1e-79 300.8 290 74.1
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.2e-79 298.9 290 73.8
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 5.5e-79 298.5 283 75.3
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 5.5e-79 298.5 289 74.4
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 7.2e-79 298.1 283 74.2
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 1.6e-78 297.0 286 72.7
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 3.6e-78 295.8 283 73.5
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 3.6e-78 295.8 281 70.5
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 8.0e-78 294.7 281 73.3
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.4e-77 293.9 283 73.1
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 1.4e-77 293.9 288 71.5
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 1.4e-77 293.9 283 73.5
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 1.8e-77 293.5 290 72.1
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 1.8e-77 293.5 288 71.5
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 2.3e-77 293.1 284 70.1
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 2.3e-77 293.1 288 70.8
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 4.0e-77 292.4 281 65.5
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 4.0e-77 292.4 283 73.1
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.0e-77 292.4 288 70.8
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 5.2e-77 292.0 281 73.3
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 8.8e-77 291.2 286 71.7
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 8.8e-77 291.2 283 73.1
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 8.8e-77 291.2 283 73.1
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 8.8e-77 291.2 281 73.3
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 1.2e-76 290.8 289 68.2
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.5e-76 290.4 283 71.7
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 1.5e-76 290.4 282 72.7
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 4.4e-76 288.9 286 70.3
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 4.4e-76 288.9 283 72.8
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 3.7e-75 285.8 286 68.9
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 3.7e-75 285.8 281 72.2
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 3.7e-75 285.8 275 73.5
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 4.8e-75 285.4 283 71.7
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 1.2e-73 280.8 282 63.8
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 2.7e-73 279.6 280 71.1
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 2.7e-73 279.6 281 71.2
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 4.5e-73 278.9 283 68.9
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 7.7e-73 278.1 304 50.7
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 1.3e-72 277.3 287 69.0
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 2.9e-72 276.2 284 70.1
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.5e-71 273.9 284 70.4
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 1.5e-71 273.9 285 69.8
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 2.5e-71 273.1 265 74.0
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.2e-70 270.8 287 69.0
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 1.2e-70 270.8 280 71.4
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 2.3e-69 266.5 280 67.9
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 4.0e-69 265.8 238 80.7
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 2.6e-68 263.1 312 67.0
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 4.4e-68 262.3 283 68.2
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 2.4e-66 256.5 160 76.2
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 2.4e-66 256.5 277 71.5
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 4.1e-66 255.8 281 66.9
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 5.4e-66 255.4 296 64.2
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 9.1e-66 254.6 281 62.6
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 1.0e-64 251.1 162 73.5
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.7e-64 250.4 170 71.2
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 5.0e-64 248.8 283 58.0
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 5.0e-64 248.8 315 47.6
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 1.9e-63 246.9 280 66.8
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 4.2e-63 245.7 277 67.1
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 5.5e-63 245.4 165 71.5
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 6.8e-61 238.4 356 56.2
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.2e-60 237.7 162 66.7
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.0e-60 236.9 240 72.9
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.4e-60 236.1 162 69.8
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 7.5e-60 235.0 281 65.1
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 2.4e-58 229.9 162 69.1
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 1.2e-57 227.6 273 63.7
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.6e-57 227.3 285 62.8
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 2.7e-57 226.5 285 62.8
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.1e-54 215.3 285 61.1
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.0e-53 213.0 312 40.1
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 4.9e-51 205.7 273 61.9
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.4e-50 204.1 285 60.0
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 1.1e-47 194.5 260 61.9
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 1.5e-44 184.1 194 78.4
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 5.8e-44 182.2 123 71.5
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 2.9e-43 179.9 241 66.0
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 6.0e-41 172.2 194 76.3
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.5e-39 166.8 214 42.1
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 5.8e-36 155.6 169 49.7
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 9.8e-36 154.8 121 64.5
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 4.9e-35 152.5 283 51.6
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 4.1e-34 149.4 123 60.2
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 2.7e-33 146.7 275 52.0
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 8.9e-29 131.7 181 42.0
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 3.4e-28 129.8 181 42.0
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 1.7e-27 127.5 170 74.7
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.9e-27 125.9 182 40.7
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.1e-25 120.6 142 85.9
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 2.1e-22 110.5 83 61.4
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 2.0e-20 104.0 114 46.5
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.6e-20 103.6 128 86.7
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 2.1e-17 94.0 145 39.3
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 2.7e-17 93.6 134 63.4
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.5e-15 87.8 81 54.3
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.3e-15 86.3 122 83.6
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 2.1e-14 84.0 84 53.6
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-10 71.2 48 68.8
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 3.9e-08 63.2 56 55.4
Hma1.2p1_0870F.1_g230930 Hydrangea macrophylla HOM05D005436 ORTHO05D006215 3.9e-08 63.2 48 72.9
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 1.5e-07 61.2 39 66.7
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 4.3e-07 59.7 47 57.4
Zm00001eb344380 Zea mays HOM05D005436 ORTHO05D006215 5.6e-07 59.3 63 52.4
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 7.4e-07 58.9 35 71.4


User provided reference genes

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