Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00622 Erythranthe guttata HOM05D007686 ORTHO05D009709 7.1e-37 159.5 80 100.0
SGA_v2.0_scaffold100G29576 Striga asiatica HOM05D007686 ORTHO05D009709 1.2e-28 132.1 80 81.2
Dinv14741 Davidia involucrata HOM05D007686 ORTHO05D009709 4.0e-24 117.1 80 68.8
MSTRG.555 Avicennia marina HOM05D007686 ORTHO05D009709 5.3e-24 116.7 66 89.4
CiPaw.05G168000 Carya illinoinensis HOM05D007686 ORTHO05D009709 1.5e-23 115.2 80 67.5
TWI18G1075 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 1.0e-22 112.5 79 67.1
HanXRQChr08g0208401 Helianthus annuus HOM05D007686 ORTHO05D009709 2.2e-22 111.3 77 67.5
Potri.008G185000 Populus trichocarpa HOM05D007686 ORTHO05D009709 6.5e-22 109.8 80 63.8
ECA233G6157 Erigeron canadensis HOM05D007686 ORTHO05D009709 8.4e-22 109.4 77 66.2
Prupe.1G242700 Prunus persica HOM05D007686 ORTHO05D009709 8.4e-22 109.4 77 63.6
TWI36G0128 Tripterygium wilfordii HOM05D007686 ORTHO05D009709 1.1e-21 109.0 80 65.0
RcHm_v2.0_Chr4g0432731 Rosa chinensis HOM05D007686 ORTHO05D009709 1.4e-21 108.6 80 61.2
CANSAT01G2773 Cannabis sativa HOM05D007686 ORTHO05D009709 2.5e-21 107.8 78 65.4
Ciclev10031251m.g Citrus clementina HOM05D007686 ORTHO05D009709 3.2e-21 107.5 80 61.2
Gohir.A04G137000 Gossypium hirsutum HOM05D007686 ORTHO05D009709 9.3e-21 105.9 80 61.2
Sabra08G0140000 Salix brachista HOM05D007686 ORTHO05D009709 9.3e-21 105.9 80 61.2
MD13G1103100 Malus domestica HOM05D007686 ORTHO05D009709 1.2e-20 105.5 67 71.6
arahy.Tifrunner.gnm1.ann1.BXJH78 Arachis hypogaea HOM05D007686 ORTHO05D009709 2.7e-20 104.4 81 60.5
Gohir.D04G180200 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.7e-20 104.4 80 61.2
FAN12G1967 Fragaria x ananassa HOM05D007686 ORTHO05D009709 3.5e-20 104.0 79 60.8
Solyc06g008190.1 Solanum lycopersicum HOM05D007686 ORTHO05D009709 3.5e-20 104.0 67 70.1
Sopen06g003050 Solanum pennellii HOM05D007686 ORTHO05D009709 3.5e-20 104.0 67 70.1
Lalb_Chr07g0185471 Lupinus albus HOM05D007686 ORTHO05D009709 4.6e-20 103.6 81 61.7
CSS0050065 Camellia sinensis var. sinensis HOM05D007686 ORTHO05D009709 1.3e-19 102.1 62 74.2
PGR119G1810 Punica granatum HOM05D007686 ORTHO05D009709 1.8e-19 101.7 80 60.0
Cpa.g.sc33.48 Carica papaya HOM05D007686 ORTHO05D009709 2.3e-19 101.3 80 60.0
Thecc.02G263700 Theobroma cacao HOM05D007686 ORTHO05D009709 3.9e-19 100.5 80 58.8
TPR.G6255 Trifolium pratense HOM05D007686 ORTHO05D009709 5.1e-19 100.1 81 60.5
CDE05G1633 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 1.5e-18 98.6 72 65.3
DCAR_031167 Daucus carota HOM05D002540 ORTHO05D002672 1.5e-18 98.6 67 68.7
Psat7g058760 Pisum sativum HOM05D007686 ORTHO05D009709 2.5e-18 97.8 81 58.0
MD16G1103300 Malus domestica HOM05D007686 ORTHO05D009709 4.3e-18 97.1 59 76.3
Eucgr.H02473 Eucalyptus grandis HOM05D007686 ORTHO05D009709 5.7e-18 96.7 76 57.9
Medtr8g089700 Medicago truncatula HOM05D007686 ORTHO05D009709 5.7e-18 96.7 81 56.8
Manes.13G022000 Manihot esculenta HOM05D007686 ORTHO05D009709 7.4e-18 96.3 80 56.2
Manes.13G021400 Manihot esculenta HOM05D007686 ORTHO05D009709 1.6e-17 95.1 80 56.2
Gorai.012G173300 Gossypium raimondii HOM05D007686 ORTHO05D009709 2.8e-17 94.4 66 65.2
Lj3P1060G37 Lonicera japonica HOM05D007686 ORTHO05D009709 6.3e-17 93.2 66 65.2
Nitab4.5_0000067g0230 Nicotiana tabacum HOM05D007686 ORTHO05D009709 1.1e-16 92.4 63 63.5
Rhsim12G0039200 Rhododendron simsii HOM05D007686 ORTHO05D009709 1.1e-16 92.4 60 68.3
CsaV3_5G030960 Cucumis sativus L. HOM05D007686 ORTHO05D009709 1.8e-16 91.7 77 57.1
Hma1.2p1_0815F.1_g222720 Hydrangea macrophylla HOM05D007686 ORTHO05D009709 3.1e-16 90.9 60 68.3
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 5.3e-16 90.1 69 62.3
Nitab4.5_0001839g0010 Nicotiana tabacum HOM05D007686 ORTHO05D009709 5.3e-16 90.1 60 65.0
GSVIVG01000559001 Vitis vinifera HOM05D007686 ORTHO05D009709 5.3e-16 90.1 59 64.4
Lj4g0016926 Lotus japonicus HOM05D007686 ORTHO05D009709 9.0e-16 89.4 84 54.8
Ca_17785_v3 Cicer arietinum L. HOM05D007686 ORTHO05D009709 2.0e-15 88.2 81 54.3
Glyma.05G173932 Glycine max HOM05D007686 ORTHO05D009709 2.6e-15 87.8 82 53.7
QL03p056833 Quercus lobata HOM05D007686 ORTHO05D009709 3.4e-15 87.4 54 74.1
QL93p1848_0021 Quercus lobata HOM05D007686 ORTHO05D009709 3.4e-15 87.4 54 74.1
Sed0013465 Sechium edule HOM05D007686 ORTHO05D009709 3.4e-15 87.4 77 54.5
Glyma.08G131100 Glycine max HOM05D007686 ORTHO05D009709 4.5e-15 87.0 82 53.7
ClCG05G025900 Citrullus lanatus HOM05D007686 ORTHO05D009709 5.9e-15 86.7 75 53.3
Phvul.002G258900 Phaseolus vulgaris HOM05D007686 ORTHO05D009709 7.7e-15 86.3 82 53.7
AUR62011787 Chenopodium quinoa HOM05D007686 ORTHO05D009709 2.2e-14 84.7 66 59.1
PSO724G0460 Papaver somniferum HOM05D007686 ORTHO05D009709 5.5e-13 80.1 58 63.8
SHI17831 Sapria himalayana HOM05D007686 ORTHO05D009709 5.5e-13 80.1 80 48.8
PSO135G0590 Papaver somniferum HOM05D007686 ORTHO05D009709 1.2e-12 79.0 53 67.9
Zm00001eb331140 Zea mays HOM05D007686 ORTHO05D009709 2.7e-12 77.8 72 54.2
Atru.chr11.2166 Acer truncatum HOM05D007686 ORTHO05D009709 3.6e-12 77.4 53 66.0
EL10Ac7g16785 Beta vulgaris HOM05D007686 ORTHO05D009709 3.6e-12 77.4 62 59.7
Os07g0688100 Oryza sativa ssp. japonica HOM05D007686 ORTHO05D009709 6.1e-12 76.6 72 52.8
Sc06g0009620 Simmondsia chinensis HOM05D007686 ORTHO05D009709 7.9e-12 76.3 56 62.5
Aqoxy2G03020 Aquilegia oxysepala HOM05D007686 ORTHO05D009709 1.5e-10 72.0 47 74.5
AT1G13040 Arabidopsis thaliana HOM05D007686 ORTHO05D009709 2.0e-10 71.6 53 64.2
FvH4_4g25420 Fragaria vesca HOM05D007686 ORTHO05D009709 2.0e-10 71.6 44 70.5
AL1G24690 Arabidopsis lyrata HOM05D007686 ORTHO05D009709 2.5e-10 71.2 53 64.2
Carub.0001s1279 Capsella rubella HOM05D007686 ORTHO05D009709 3.3e-10 70.9 53 64.2
Sp1g11590 Schrenkiella parvula HOM05D007686 ORTHO05D009709 4.3e-10 70.5 53 64.2
THA.LOC104805275 Tarenaya hassleriana HOM05D007686 ORTHO05D009709 7.4e-10 69.7 50 68.0
Aa31LG1G1760 Aethionema arabicum HOM05D007686 ORTHO05D009709 1.3e-09 68.9 52 61.5
BcaC05g25091 Brassica carinata HOM05D007686 ORTHO05D009709 1.7e-09 68.6 51 64.7
A06p08670 Brassica napus HOM05D002540 ORTHO05D002672 1.7e-09 68.6 51 64.7
BolC5t29774H Brassica oleracea HOM05D007686 ORTHO05D009709 1.7e-09 68.6 51 64.7
BraA06t24064Z Brassica rapa HOM05D007686 ORTHO05D009709 1.7e-09 68.6 51 64.7
C05p10280 Brassica napus HOM05D002540 ORTHO05D002672 3.7e-09 67.4 51 62.7
TAR383G0079 Trochodendron aralioides HOM05D007686 ORTHO05D009709 3.7e-09 67.4 45 68.9
C08p15790 Brassica napus HOM05D002540 ORTHO05D002672 6.3e-09 66.6 51 64.7
BolC8t49205H Brassica oleracea HOM05D002540 ORTHO05D002672 6.3e-09 66.6 51 64.7
Lsat_1_v5_gn_8_152860 Lactuca sativa HOM05D007686 ORTHO05D009709 8.2e-09 66.2 46 63.0
Oeu049173.1 Olea europaea HOM05D007686 ORTHO05D009709 1.4e-08 65.5 43 67.4
A08p32500 Brassica napus HOM05D007686 ORTHO05D009709 1.8e-08 65.1 51 64.7
BraA08t35174Z Brassica rapa HOM05D007686 ORTHO05D009709 1.8e-08 65.1 51 64.7
CARHR013370 Cardamine hirsuta HOM05D007686 ORTHO05D009709 1.8e-08 65.1 51 62.7
Thhalv10007381m.g Eutrema salsugineum HOM05D007686 ORTHO05D009709 2.4e-08 64.7 51 60.8
COL.COLO4_23488 Corchorus olitorius HOM05D007686 ORTHO05D009709 5.3e-08 63.5 46 58.7
CAN.G941.2 Capsicum annuum HOM05D007686 ORTHO05D009709 6.9e-08 63.2 165 27.9
PGSC0003DMG400014696 Solanum tuberosum HOM05D007686 ORTHO05D009709 1.2e-07 62.4 45 60.0
HPP92_012781 Vanilla planifolia HOM05D007686 ORTHO05D009709 7.7e-07 59.7 40 62.5
Gohir.A03G132900 Gossypium hirsutum HOM05D007686 ORTHO05D009709 2.9e-06 57.8 46 56.5


User provided reference genes

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