Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 2.8e-255 884.8 444 100.0
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 1.0e-193 680.2 440 78.2
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 2.2e-191 672.5 447 76.7
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 5.3e-182 641.3 440 73.9
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 3.2e-179 632.1 392 81.1
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 1.6e-178 629.8 439 73.6
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 4.7e-178 628.2 461 70.9
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 6.7e-177 624.4 400 78.0
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 2.6e-176 622.5 442 71.7
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.3e-176 622.1 398 78.6
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 3.3e-176 622.1 457 70.9
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 3.3e-176 622.1 413 77.5
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 4.4e-176 621.7 402 77.9
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 9.7e-176 620.5 432 73.8
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 9.7e-176 620.5 454 72.0
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 2.8e-175 619.0 449 71.7
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 4.8e-175 618.2 457 70.7
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 6.3e-175 617.8 458 71.0
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 1.1e-174 617.1 414 74.9
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 3.1e-174 615.5 395 76.7
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 4.1e-174 615.1 449 71.0
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 4.1e-174 615.1 449 70.8
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 9.1e-174 614.0 452 71.5
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 1.2e-173 613.6 466 70.2
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 1.2e-173 613.6 458 71.0
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 2.6e-173 612.5 403 76.7
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 2.6e-173 612.5 441 72.3
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 4.5e-173 611.7 460 70.2
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 3.8e-172 608.6 393 76.8
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 3.8e-172 608.6 430 72.6
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 2.5e-171 605.9 455 71.2
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 3.2e-171 605.5 461 69.6
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 7.2e-171 604.4 391 76.0
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 7.2e-171 604.4 391 76.5
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 1.2e-170 603.6 463 68.9
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 1.6e-170 603.2 460 69.6
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 1.6e-170 603.2 393 76.3
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 2.1e-170 602.8 389 78.1
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 2.7e-170 602.4 457 68.9
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 2.7e-170 602.4 465 68.8
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 2.7e-170 602.4 390 75.4
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 6.1e-170 601.3 409 73.8
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 8.0e-170 600.9 408 74.5
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 1.0e-169 600.5 406 74.6
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 1.4e-169 600.1 460 68.9
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 1.4e-169 600.1 470 67.9
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 5.2e-169 598.2 409 73.6
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 5.2e-169 598.2 463 68.5
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 8.8e-169 597.4 430 71.4
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 1.1e-168 597.0 440 71.4
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 2.0e-168 596.3 432 70.4
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 5.7e-168 594.7 391 75.4
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 5.7e-168 594.7 421 72.2
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 2.8e-167 592.4 421 72.2
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 3.7e-167 592.0 465 67.5
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 8.2e-167 590.9 463 68.3
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 1.8e-166 589.7 381 76.9
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 2.4e-166 589.3 383 77.0
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 9.1e-166 587.4 381 76.6
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 1.6e-165 586.6 375 77.3
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 1.6e-165 586.6 402 73.1
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 2.0e-165 586.3 415 71.1
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 2.0e-165 586.3 381 76.4
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 2.6e-165 585.9 374 77.8
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 5.9e-165 584.7 415 71.1
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 1.0e-164 583.9 401 73.8
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 1.3e-164 583.6 460 66.7
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 1.7e-164 583.2 446 69.1
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 1.7e-164 583.2 448 69.0
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 1.9e-163 579.7 374 77.3
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 9.4e-163 577.4 454 67.8
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.6e-162 576.6 438 69.2
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 3.6e-162 575.5 409 70.4
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 1.8e-161 573.2 458 63.8
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 8.8e-161 570.9 438 68.5
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 8.8e-161 570.9 395 72.7
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 1.2e-160 570.5 416 69.5
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 3.3e-160 568.9 396 72.0
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 5.7e-160 568.2 374 73.8
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 5.7e-160 568.2 444 67.8
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 1.7e-159 566.6 460 63.5
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 2.8e-159 565.8 394 72.1
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 4.8e-159 565.1 453 63.4
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 4.1e-158 562.0 396 69.2
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 2.0e-157 559.7 409 68.0
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 5.0e-156 555.1 450 64.9
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 5.0e-156 555.1 403 68.5
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 6.5e-156 554.7 445 63.8
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 3.2e-155 552.4 409 67.5
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 9.4e-155 550.8 454 64.8
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 4.4e-152 542.0 442 62.9
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 7.5e-152 541.2 442 62.7
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 7.5e-152 541.2 442 62.7
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 4.1e-150 535.4 404 65.8
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 4.1e-150 535.4 404 65.8
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 8.6e-148 527.7 404 67.8
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 1.3e-143 513.8 339 76.1
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 5.4e-142 508.4 444 59.0
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 1.6e-141 506.9 438 59.8
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 3.3e-139 499.2 439 59.0
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 2.6e-136 489.6 310 78.4
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 2.7e-133 479.6 370 69.5
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 4.6e-133 478.8 463 54.9
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 1.4e-105 387.5 355 58.0
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 8.4e-103 378.3 249 75.9
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 1.4e-102 377.5 371 51.5
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 2.4e-102 376.7 399 49.1
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 1.0e-100 371.3 378 52.6
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 6.6e-100 368.6 355 51.5
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.8e-95 352.8 369 50.7
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 2.3e-92 343.6 390 50.3
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.9e-79 300.1 317 50.5
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 1.6e-77 294.3 344 45.9
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 9.7e-75 285.0 381 45.1
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 9.4e-54 215.3 135 73.3
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 4.2e-46 189.9 256 47.3
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 5.4e-41 172.9 104 80.8
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 2.5e-38 164.1 96 77.1
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 1.2e-29 135.2 128 60.9
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 4.7e-29 133.3 269 36.1
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 6.1e-29 132.9 128 60.2
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.3e-28 131.0 283 35.3
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 2.4e-25 120.9 84 73.8
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 3.5e-24 117.1 82 74.4
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.6e-24 116.7 72 79.2
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 7.8e-24 115.9 353 29.2
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 5.8e-19 99.8 108 54.6
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 2.2e-18 97.8 138 50.0
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.3e-14 83.6 72 63.9
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 1.6e-13 81.6 99 49.5
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 2.8e-13 80.9 123 43.1
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 7.8e-08 62.8 56 53.6


User provided reference genes

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