Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 1.2e-231 806.2 414 100.0
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 8.4e-190 667.2 416 83.2
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 6.0e-188 661.0 416 82.0
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 1.0e-179 633.6 520 67.9
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 1.2e-175 620.2 416 76.7
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 1.2e-175 620.2 418 77.0
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 1.8e-171 606.3 419 73.7
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 6.7e-171 604.4 420 75.5
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 1.1e-170 603.6 420 75.0
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 1.1e-170 603.6 418 75.1
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 2.5e-170 602.4 418 74.9
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 1.7e-169 599.7 413 76.8
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 2.2e-169 599.4 420 74.5
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 1.1e-168 597.0 419 74.0
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 1.4e-168 596.7 418 75.8
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 2.4e-168 595.9 420 75.2
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 5.3e-168 594.7 420 73.8
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 6.9e-168 594.3 419 73.7
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 6.9e-168 594.3 420 73.8
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 6.9e-168 594.3 419 73.7
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 1.2e-167 593.6 419 73.7
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 1.2e-167 593.6 420 73.6
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 5.9e-167 591.3 420 73.8
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 7.7e-167 590.9 420 73.1
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 1.0e-166 590.5 417 73.9
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 2.9e-166 589.0 433 72.1
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 6.5e-166 587.8 420 72.9
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 6.5e-166 587.8 419 74.0
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 8.5e-166 587.4 420 73.3
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.1e-165 587.0 419 73.7
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 1.1e-165 587.0 420 72.9
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 1.4e-165 586.6 418 73.2
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 1.4e-165 586.6 420 73.3
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 4.2e-165 585.1 420 74.0
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 4.2e-165 585.1 418 73.2
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 7.2e-165 584.3 420 73.1
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 1.2e-164 583.6 419 72.3
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 3.6e-164 582.0 419 73.3
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 6.1e-164 581.3 420 72.9
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 3.0e-163 578.9 419 72.8
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 3.0e-163 578.9 419 72.8
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 5.1e-163 578.2 415 73.3
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 1.1e-162 577.0 423 73.0
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 4.4e-162 575.1 420 72.4
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 1.3e-161 573.5 418 73.0
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 2.8e-161 572.4 420 72.4
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 4.8e-161 571.6 420 70.5
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 4.8e-161 571.6 464 66.6
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 6.3e-161 571.2 420 70.5
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 1.8e-160 569.7 421 72.2
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 7.0e-160 567.8 418 71.1
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 9.1e-160 567.4 418 70.1
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 1.2e-159 567.0 422 70.4
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 1.6e-159 566.6 422 69.9
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 4.5e-159 565.1 418 72.2
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 5.9e-159 564.7 420 71.2
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 7.7e-159 564.3 421 71.7
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 1.7e-158 563.1 419 69.9
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 2.9e-158 562.4 418 69.1
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 2.9e-158 562.4 417 71.0
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 2.9e-158 562.4 422 70.4
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 3.8e-158 562.0 421 70.8
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 3.8e-158 562.0 421 71.5
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 1.9e-157 559.7 431 68.9
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 5.5e-157 558.1 419 69.5
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 9.4e-157 557.4 419 69.5
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 4.7e-156 555.1 421 70.3
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 6.1e-156 554.7 420 69.5
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 1.4e-155 553.5 418 70.3
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 5.2e-155 551.6 417 70.5
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 6.7e-155 551.2 420 70.7
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 1.1e-154 550.4 422 70.6
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 1.5e-154 550.1 419 67.5
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 5.7e-154 548.1 417 70.3
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 7.5e-154 547.7 419 69.9
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 2.8e-153 545.8 396 73.2
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 3.1e-152 542.3 420 67.4
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 5.3e-152 541.6 420 68.1
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 3.5e-151 538.9 420 67.1
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 4.5e-151 538.5 421 67.5
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 7.7e-151 537.7 421 67.2
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 1.0e-150 537.3 428 69.2
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.3e-150 537.0 419 65.6
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 3.8e-150 535.4 424 68.9
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 6.5e-150 534.6 421 67.0
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 6.5e-150 534.6 421 67.2
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 2.5e-149 532.7 418 65.3
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 2.5e-149 532.7 422 66.8
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 1.2e-148 530.4 424 69.1
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 4.0e-147 525.4 423 65.5
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 4.0e-147 525.4 419 66.6
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 4.4e-146 521.9 419 66.6
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 2.2e-145 519.6 421 64.6
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 2.8e-145 519.2 423 65.7
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 2.8e-145 519.2 423 63.8
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 4.8e-145 518.5 421 64.1
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 2.4e-144 516.2 421 66.3
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 3.1e-144 515.8 371 74.1
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 1.6e-143 513.5 406 69.2
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.6e-140 503.4 414 64.3
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 1.2e-135 487.3 425 61.9
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 1.6e-135 486.9 427 64.6
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 2.3e-134 483.0 415 62.4
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 2.3e-134 483.0 415 63.4
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 2.9e-134 482.6 425 60.2
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 1.8e-131 473.4 424 60.6
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 2.3e-131 473.0 413 62.5
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 2.9e-129 466.1 418 62.0
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 4.1e-128 462.2 411 60.8
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 1.2e-127 460.7 416 60.6
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 1.2e-127 460.7 416 60.6
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 3.0e-126 456.1 416 60.3
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 1.5e-125 453.8 416 60.1
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 1.5e-125 453.8 416 60.1
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 3.3e-125 452.6 324 73.5
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 4.3e-125 452.2 416 59.4
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 6.2e-116 421.8 324 68.2
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 8.9e-115 417.9 421 57.2
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 7.5e-114 414.8 418 59.1
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 9.2e-112 407.9 452 54.2
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 3.1e-99 366.3 441 50.8
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 2.0e-98 363.6 448 50.0
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 3.4e-98 362.8 382 57.6
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 8.4e-97 358.2 258 72.9
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.4e-96 357.5 442 48.9
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 2.3e-94 350.1 448 49.8
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 6.6e-94 348.6 308 63.0
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 7.3e-93 345.1 221 82.8
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 3.6e-84 316.2 412 50.0
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 3.7e-76 289.7 196 77.0
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 4.8e-76 289.3 432 42.8
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 1.3e-70 271.2 197 69.0
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 1.5e-61 241.1 280 52.9
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 4.1e-59 233.0 218 61.0
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 1.3e-41 174.9 117 74.4
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 1.0e-38 165.2 115 74.8
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 1.2e-37 161.8 232 45.7
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 4.2e-32 143.3 213 45.1
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 8.3e-28 129.0 120 58.3
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 1.7e-20 104.8 129 47.3
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 2.4e-19 100.9 76 69.7
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 2.0e-18 97.8 76 71.1
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 4.5e-18 96.7 86 55.8
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 2.5e-16 90.9 92 54.3
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 5.7e-13 79.7 248 31.5
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 6.4e-12 76.3 60 61.7
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 7.3e-08 62.8 32 90.6


User provided reference genes

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