Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.8e-162 575.9 294 100.0
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 3.0e-109 399.1 308 67.9
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 4.0e-109 398.7 279 71.7
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 1.1e-106 390.6 310 67.1
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 2.4e-106 389.4 287 70.7
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 9.2e-106 387.5 269 72.9
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.5e-105 385.2 290 68.3
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 6.6e-104 381.3 280 68.9
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 1.0e-101 374.0 308 63.6
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 2.3e-96 356.3 292 62.0
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 3.3e-95 352.4 311 59.8
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 9.5e-95 350.9 292 61.6
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 2.1e-94 349.7 295 60.3
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 5.2e-93 345.1 256 64.8
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.7e-91 340.1 261 64.4
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 3.7e-91 339.0 292 58.9
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.7e-91 339.0 265 64.2
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 4.9e-91 338.6 260 67.3
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 1.9e-90 336.7 253 66.0
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 3.2e-90 335.9 293 58.0
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 4.1e-90 335.5 253 66.0
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 5.4e-90 335.1 292 56.8
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 9.2e-90 334.3 294 57.1
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.6e-89 333.6 294 57.5
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.6e-89 332.0 252 61.9
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.9e-88 328.9 305 57.7
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 1.1e-87 327.4 292 58.2
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 1.1e-87 327.4 303 56.1
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.9e-87 326.6 345 52.5
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 3.3e-87 325.9 292 56.8
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 9.5e-87 324.3 292 55.8
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.2e-86 323.9 289 57.1
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 8.1e-86 321.2 251 61.8
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 8.1e-86 321.2 298 54.0
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.1e-85 320.9 294 56.5
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.1e-85 320.9 293 54.3
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.4e-85 320.5 292 53.8
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.8e-85 320.1 292 54.8
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.8e-85 320.1 345 52.8
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 3.1e-85 319.3 250 60.4
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 5.2e-85 318.5 292 55.8
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 8.9e-85 317.8 292 53.4
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.0e-84 316.6 250 60.0
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 2.6e-84 316.2 250 61.6
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 4.4e-84 315.5 295 55.3
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 9.8e-84 314.3 283 55.8
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 2.2e-83 313.2 292 54.8
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 6.4e-83 311.6 292 54.5
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.4e-82 310.5 275 55.3
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 1.4e-82 310.5 250 60.4
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.4e-82 309.7 294 57.8
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 3.2e-82 309.3 250 60.0
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 1.2e-81 307.4 341 50.4
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.2e-81 307.4 292 55.1
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.6e-81 307.0 266 57.5
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 2.7e-81 306.2 293 56.7
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.7e-81 306.2 281 54.8
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 3.5e-81 305.8 297 54.9
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.6e-81 305.4 443 42.7
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 6.0e-81 305.1 287 52.3
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 6.0e-81 305.1 278 55.8
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 7.8e-81 304.7 252 58.7
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.0e-80 304.3 256 57.4
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.3e-80 303.9 251 60.2
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 1.7e-80 303.5 281 54.4
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 5.1e-80 302.0 282 53.5
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 8.6e-80 301.2 282 53.5
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.1e-79 300.8 293 55.3
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.8e-78 296.2 283 51.6
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.3e-77 293.1 337 47.5
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 4.0e-77 292.4 230 61.7
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.5e-76 290.4 248 56.5
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.0e-76 290.0 245 56.7
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.1e-74 284.3 292 50.0
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 2.1e-73 280.0 256 51.2
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 3.5e-73 279.3 263 54.8
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 3.5e-73 279.3 295 51.9
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 7.8e-73 278.1 256 51.2
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 7.8e-73 278.1 256 51.2
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 1.3e-72 277.3 292 49.0
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 6.6e-72 275.0 292 48.3
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 6.6e-72 275.0 291 49.5
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 6.6e-72 275.0 290 50.3
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.9e-71 273.5 311 47.3
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.9e-71 273.5 244 53.7
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 4.3e-71 272.3 255 55.3
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 5.6e-71 271.9 291 48.5
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 2.1e-70 270.0 291 48.1
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 2.8e-70 269.6 181 71.8
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 3.6e-70 269.2 283 48.4
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 3.6e-70 269.2 291 48.5
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 6.2e-70 268.5 250 54.0
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 8.1e-70 268.1 267 49.8
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 8.1e-70 268.1 263 50.2
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.8e-69 266.9 263 50.2
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.5e-68 263.8 291 47.4
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.3e-67 260.8 260 48.5
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 6.4e-67 258.5 295 47.5
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.4e-66 257.3 281 47.0
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.4e-66 257.3 292 47.6
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 2.7e-65 253.1 292 46.2
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 6.0e-65 251.9 295 47.1
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.0e-64 251.1 255 50.6
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.3e-64 250.8 295 46.4
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.0e-64 249.6 295 46.8
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.5e-63 247.3 249 49.8
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.3e-63 245.7 295 46.4
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 2.1e-62 243.4 250 46.4
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.3e-59 234.2 174 69.0
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 6.4e-59 231.9 261 46.0
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.2e-57 227.6 292 44.2
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 4.6e-57 225.7 174 66.7
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 4.6e-57 225.7 240 50.0
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.9e-56 222.6 228 51.3
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 5.6e-55 218.8 219 47.9
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.1e-54 216.9 295 43.4
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.9e-50 203.8 209 50.7
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.5e-50 202.2 168 60.1
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 5.5e-50 202.2 196 55.6
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.9e-47 193.7 206 52.9
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.6e-46 190.7 140 65.7
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.4e-45 186.8 183 52.5
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.0e-43 181.4 220 48.6
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.9e-43 179.1 196 46.9
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 7.1e-42 175.3 134 61.2
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 7.1e-42 175.3 262 38.2
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 1.1e-39 167.9 103 77.7
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 1.3e-38 164.5 346 32.4
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.6e-38 164.1 182 50.5
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 3.7e-38 162.9 456 28.9
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.1e-37 161.4 124 67.7
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 6.9e-37 158.7 196 47.4
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.2e-36 157.9 181 49.2
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 3.8e-35 152.9 188 41.5
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 7.2e-34 148.7 300 35.0
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.5e-31 141.0 272 34.9
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 4.8e-30 136.0 249 33.7
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 5.0e-27 125.9 211 35.1
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 7.9e-25 118.6 167 40.7
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 2.3e-24 117.1 86 69.8
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 1.5e-23 114.4 118 52.5
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 5.7e-23 112.5 116 51.7
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 3.7e-22 109.8 248 27.8
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 8.5e-19 98.6 264 27.7
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 3.2e-18 96.7 145 40.0
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.6e-17 94.4 65 72.3
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 3.3e-15 86.7 145 35.9
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 3.3e-15 86.7 145 35.9
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 4.4e-15 86.3 114 40.4
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 1.7e-14 84.3 200 31.0
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 3.7e-14 83.2 139 34.5
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 7.0e-13 79.0 66 56.1
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 1.2e-12 78.2 61 62.3
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.0e-12 77.4 61 68.9
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 8.5e-11 72.0 39 82.1
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 4.2e-10 69.7 266 24.4
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 9.4e-10 68.6 164 30.5
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 9.7e-07 58.5 68 47.1
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 3.7e-06 56.6 73 35.6


User provided reference genes

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