Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 0.0e+00 1645.6 844 100.0
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 0.0e+00 1133.2 887 68.2
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 3.2e-305 1051.6 955 61.0
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 1.0e-287 993.4 887 60.1
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 6.0e-251 871.3 853 55.7
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 5.1e-242 841.6 891 52.9
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 5.8e-238 828.2 883 52.3
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.7e-237 826.6 897 52.0
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 9.3e-236 820.8 889 51.5
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 4.6e-235 818.5 883 52.7
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 7.9e-235 817.8 889 51.2
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.3e-234 817.0 930 50.0
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 5.6e-233 811.6 890 51.5
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 4.8e-232 808.5 882 51.8
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 5.3e-231 805.1 892 52.2
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 6.9e-231 804.7 751 56.7
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 3.8e-229 798.9 875 51.1
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 3.2e-228 795.8 887 51.2
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 2.3e-226 789.6 892 49.4
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.8e-224 782.7 883 50.4
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 4.5e-222 775.4 868 50.6
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 2.5e-220 769.6 887 49.3
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.5e-220 768.5 898 48.6
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 9.3e-220 767.7 896 49.4
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.9e-219 764.6 895 48.2
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 7.9e-219 764.6 891 48.6
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 3.9e-218 762.3 886 48.9
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 3.9e-218 762.3 890 49.1
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.9e-218 762.3 892 50.0
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.3e-217 759.2 892 50.3
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.3e-216 757.3 881 49.5
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 5.3e-215 751.9 891 47.6
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 6.9e-215 751.5 889 48.8
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.1e-212 744.2 897 48.9
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 4.6e-211 738.8 881 48.1
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 6.1e-211 738.4 881 48.0
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.1e-210 735.3 890 47.4
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 6.7e-210 734.9 888 48.2
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 8.8e-210 734.6 883 47.5
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.5e-209 733.0 890 47.4
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 7.9e-203 711.4 895 46.5
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 2.3e-202 709.9 894 47.2
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 2.3e-202 709.9 881 45.9
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 8.8e-202 708.0 904 46.3
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 4.4e-201 705.7 875 46.6
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 3.1e-199 699.5 890 47.5
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 3.1e-199 699.5 852 46.4
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 2.0e-198 696.8 745 52.2
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 5.5e-196 688.7 897 44.8
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 7.2e-196 688.3 931 44.6
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 9.4e-196 688.0 842 48.2
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.2e-195 687.6 911 44.9
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 3.6e-195 686.0 891 44.3
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 1.4e-194 684.1 896 44.4
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 3.0e-194 682.9 896 44.3
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 2.0e-193 680.2 901 44.4
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 2.7e-190 669.8 893 43.9
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 1.0e-186 657.9 893 43.8
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 2.3e-186 656.8 908 43.3
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 3.0e-186 656.4 894 43.5
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 8.8e-186 654.8 865 44.5
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 2.0e-185 653.7 841 45.8
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 7.5e-185 651.7 899 43.5
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 8.3e-184 648.3 888 43.0
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.8e-183 647.1 892 43.4
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 4.1e-183 646.0 888 42.6
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 9.1e-183 644.8 892 43.3
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 1.7e-181 640.6 966 42.7
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 2.2e-181 640.2 906 41.8
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 5.0e-181 639.0 947 42.6
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.6e-179 632.9 887 42.5
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 1.4e-178 630.9 881 42.6
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.4e-178 630.9 870 44.6
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 7.5e-177 625.2 651 53.8
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 4.9e-176 622.5 699 47.8
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 5.0e-173 612.5 911 40.7
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 8.6e-173 611.7 882 42.4
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 8.6e-173 611.7 868 42.5
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 8.6e-173 611.7 893 42.4
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 7.3e-172 608.6 892 41.6
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 7.3e-172 608.6 896 40.8
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 1.6e-171 607.4 696 48.9
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 2.1e-171 607.1 891 41.3
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 2.8e-171 606.7 892 41.3
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 3.6e-171 606.3 738 47.6
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 4.7e-171 605.9 891 41.1
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 4.7e-171 605.9 892 40.8
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 1.4e-170 604.4 892 41.3
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 3.4e-169 599.7 891 40.7
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.7e-168 597.4 894 40.9
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.0e-166 590.5 883 42.0
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.3e-165 587.0 737 46.3
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.2e-163 581.3 891 40.2
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 2.8e-163 580.1 855 42.1
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 1.7e-160 570.9 809 41.8
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.1e-155 553.9 865 40.8
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 3.7e-152 543.1 711 43.7
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 9.2e-151 538.5 889 38.0
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.9e-149 533.1 892 39.2
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.6e-147 527.7 622 47.3
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 3.2e-143 513.5 703 42.5
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.2e-142 511.5 631 47.9
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.5e-137 494.6 734 44.1
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 2.6e-137 493.8 650 45.1
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 6.2e-131 472.6 842 36.6
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 3.4e-129 466.8 683 40.6
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.4e-129 466.8 705 40.0
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 1.5e-121 441.4 871 36.1
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 4.3e-116 423.3 887 32.1
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 6.9e-114 416.0 757 35.5
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 7.6e-113 412.5 788 34.9
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 5.5e-111 406.4 591 41.3
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 3.8e-104 383.6 550 42.0
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 3.1e-90 337.4 697 33.3
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 4.1e-90 337.0 240 75.4
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 5.3e-90 336.7 252 69.8
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.8e-88 330.5 245 71.0
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.6e-86 325.1 546 36.6
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 4.2e-79 300.4 498 38.8
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.0e-76 291.6 230 66.5
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 9.1e-74 282.7 188 75.0
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 3.0e-69 267.7 189 72.5
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 5.7e-68 263.5 813 26.9
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 7.5e-68 263.1 830 28.7
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 4.8e-67 260.4 945 27.1
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 4.8e-67 260.4 945 27.1
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 1.8e-66 258.5 256 54.3
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 2.4e-66 258.1 733 26.7
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 1.6e-62 245.4 193 66.3
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.6e-54 218.8 332 38.6
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 4.7e-54 217.2 199 58.3
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.4e-50 205.7 234 47.0
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 7.8e-49 199.9 799 26.8
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.7e-48 198.7 140 74.3
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 7.3e-47 193.4 439 31.2
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.6e-46 192.2 311 36.0
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.8e-46 191.4 231 45.5
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 8.9e-45 186.4 154 62.3
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 1.2e-44 186.0 331 36.0
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 1.9e-42 178.7 222 42.3
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.3e-40 171.8 232 43.5
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.6e-39 167.2 151 55.0
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 7.3e-39 166.8 143 62.2
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.7e-35 155.6 108 74.1
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.4e-34 151.8 195 45.6
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 7.3e-31 140.2 151 50.3
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 2.8e-30 138.3 228 38.2
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.4e-26 125.9 214 36.4
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 9.2e-26 123.2 78 79.5
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 3.5e-25 121.3 391 27.9
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 6.0e-25 120.6 95 66.3
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 4.9e-19 100.9 100 54.0
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 6.4e-19 100.5 90 56.7
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 2.4e-18 98.6 112 47.3
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 7.1e-18 97.1 190 33.7
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 3.0e-16 91.7 186 31.7
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 2.9e-11 75.1 170 32.9
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 8.4e-11 73.6 102 38.2
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 6.0e-09 67.4 50 64.0
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 3.9e-08 64.7 418 23.0
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 2.5e-07 62.0 98 41.8
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 7.4e-07 60.5 88 36.4
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.1e-06 58.9 63 52.4


User provided reference genes

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