Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 2.7e-267 924.9 493 100.0
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 6.0e-134 481.9 485 57.9
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 2.5e-124 449.9 482 56.8
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 4.6e-118 429.1 494 51.8
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 2.8e-99 366.7 475 50.1
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 2.8e-99 366.7 475 50.1
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 3.1e-98 363.2 487 48.0
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 1.2e-94 351.3 493 46.9
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 5.1e-93 345.9 471 49.3
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 1.4e-90 337.8 492 45.9
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.4e-90 337.0 486 46.3
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 1.8e-85 320.9 501 44.3
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 5.7e-84 315.8 431 45.7
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 7.4e-84 315.5 502 43.4
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 2.8e-83 313.5 504 43.3
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 1.4e-82 311.2 495 44.0
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 2.4e-82 310.5 467 44.5
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 4.1e-82 309.7 467 44.5
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 9.1e-82 308.5 497 43.1
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 2.0e-81 307.4 491 43.4
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 2.0e-81 307.4 502 42.0
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 2.6e-81 307.0 515 41.2
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 4.5e-81 306.2 467 44.3
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 2.2e-80 303.9 494 42.1
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 2.9e-80 303.5 484 43.2
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 4.2e-79 299.7 497 43.7
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 5.5e-79 299.3 503 43.5
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 5.5e-79 299.3 496 41.1
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.6e-78 297.7 495 41.8
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 2.7e-78 297.0 544 40.1
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 7.9e-78 295.4 483 41.6
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 3.0e-77 293.5 522 39.1
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 5.1e-77 292.7 485 42.5
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 5.7e-76 289.3 492 41.1
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 1.3e-75 288.1 425 43.5
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 2.2e-75 287.3 523 39.0
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 1.1e-74 285.0 475 41.9
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 1.8e-74 284.3 498 40.0
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 4.1e-74 283.1 490 39.2
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 5.3e-74 282.7 426 45.1
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 7.0e-74 282.3 491 40.9
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 7.7e-73 278.9 423 42.6
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 2.2e-72 277.3 491 42.0
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 1.9e-71 274.2 508 40.7
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 4.2e-71 273.1 423 42.6
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 7.2e-71 272.3 505 40.4
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 9.4e-71 271.9 511 39.9
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 3.6e-70 270.0 510 40.4
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 8.8e-69 265.4 523 39.6
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 1.1e-68 265.0 516 38.6
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 1.7e-67 261.2 477 39.6
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 3.7e-67 260.0 535 37.4
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 4.8e-67 259.6 517 38.9
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 6.3e-67 259.2 483 39.5
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 8.2e-67 258.8 428 39.5
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 1.1e-66 258.5 436 44.0
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 1.1e-66 258.5 477 39.4
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 1.4e-66 258.1 513 37.2
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 1.8e-66 257.7 462 40.0
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 2.9e-64 250.4 497 39.0
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 3.8e-64 250.0 464 40.5
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 5.0e-64 249.6 517 38.1
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 6.5e-64 249.2 485 40.2
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 6.5e-64 249.2 462 40.7
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 1.5e-63 248.1 455 39.6
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 5.5e-63 246.1 488 38.3
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 3.6e-62 243.4 427 40.3
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 3.6e-62 243.4 427 40.3
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 3.6e-62 243.4 502 38.0
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 8.0e-62 242.3 446 40.8
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 8.8e-61 238.8 433 39.7
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 1.5e-60 238.0 414 40.1
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 3.4e-60 236.9 500 38.8
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 9.7e-60 235.3 457 38.9
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 4.8e-59 233.0 415 39.5
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 3.1e-58 230.3 437 38.0
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 9.1e-58 228.8 431 39.2
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 1.2e-57 228.4 426 38.3
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 2.7e-57 227.3 480 37.1
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 2.7e-57 227.3 477 36.3
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 5.9e-57 226.1 435 39.5
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 5.0e-56 223.0 441 37.4
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 1.9e-55 221.1 462 37.0
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 7.2e-55 219.2 409 37.9
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 9.4e-55 218.8 446 37.0
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 1.2e-54 218.4 414 37.7
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 2.7e-54 217.2 442 38.2
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 1.4e-53 214.9 484 37.4
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.2e-52 211.8 430 39.8
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.5e-52 211.5 458 34.7
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 5.7e-52 209.5 481 37.4
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 5.7e-52 209.5 449 35.2
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 3.7e-51 206.8 481 36.6
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 1.4e-50 204.9 423 35.2
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 7.7e-49 199.1 475 35.4
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 3.8e-48 196.8 424 35.6
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 5.5e-47 193.0 420 35.7
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 5.5e-47 193.0 420 35.7
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 5.5e-47 193.0 420 35.7
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 4.7e-46 189.9 433 34.4
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 1.1e-42 178.7 364 37.4
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.2e-41 175.3 462 35.5
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 5.0e-40 169.9 213 49.8
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.5e-39 168.3 470 32.8
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 3.6e-38 163.7 246 44.7
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 2.5e-31 141.0 476 30.5
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 2.8e-30 137.5 420 30.5
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 3.7e-27 127.1 210 41.9
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 4.1e-26 123.6 237 37.6
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 1.2e-22 112.1 142 45.1
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 2.0e-20 104.8 342 30.4
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.7e-17 94.4 213 35.2
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 3.3e-15 87.4 129 41.1
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 6.4e-11 73.2 163 34.4
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.5e-07 62.0 70 48.6
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 2.1e-06 58.2 59 57.6


User provided reference genes

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