Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H01731 Erythranthe guttata HOM05D002854 ORTHO05D003051 3.8e-35 151.0 77 100.0
Oeu049427.2 Olea europaea HOM05D002854 ORTHO05D003051 6.5e-19 97.1 68 77.9
CSS0015002 Camellia sinensis var. sinensis HOM05D002854 ORTHO05D003051 1.1e-18 96.3 67 77.6
CSS0036877 Camellia sinensis var. sinensis HOM05D002854 ORTHO05D003051 1.1e-18 96.3 67 77.6
Cc05_g15440 Coffea canephora HOM05D002854 ORTHO05D003051 1.4e-18 95.9 68 76.5
Oeu053370.1 Olea europaea HOM05D002854 ORTHO05D003051 4.2e-18 94.4 68 73.5
Sopen12g007810 Solanum pennellii HOM05D002854 ORTHO05D003051 5.5e-18 94.0 63 81.0
PGSC0003DMG402029805 Solanum tuberosum HOM05D002854 ORTHO05D003051 5.5e-18 94.0 63 81.0
SGA_v2.0_scaffold168G38585 Striga asiatica HOM05D002854 ORTHO05D003051 5.5e-18 94.0 66 74.2
Actinidia30372 Actinidia chinensis HOM05D002854 ORTHO05D003051 7.2e-18 93.6 68 73.5
Migut.M01616 Erythranthe guttata HOM05D002854 ORTHO05D003051 7.2e-18 93.6 68 73.5
Sopen02g026450 Solanum pennellii HOM05D002854 ORTHO05D003051 9.3e-18 93.2 63 81.0
SGA_v2.0_scaffold7G03530 Striga asiatica HOM05D002854 ORTHO05D003051 9.3e-18 93.2 67 73.1
Actinidia10573 Actinidia chinensis HOM05D002854 ORTHO05D003051 1.6e-17 92.4 68 72.1
Hma1.2p1_2203F.1_g317080 Hydrangea macrophylla HOM05D002854 ORTHO05D003051 1.6e-17 92.4 68 73.5
QL08p002520 Quercus lobata HOM05D002854 ORTHO05D003051 4.6e-17 90.9 68 70.6
Rhsim04G0009700 Rhododendron simsii HOM05D002854 ORTHO05D003051 4.6e-17 90.9 60 81.7
SalBow3G3879 Salvia bowleyana HOM05D002854 ORTHO05D003051 4.6e-17 90.9 67 71.6
Solyc12g015910.1 Solanum lycopersicum HOM05D002854 ORTHO05D003051 4.6e-17 90.9 65 80.0
Potri.011G165400 Populus trichocarpa HOM05D002854 ORTHO05D003051 6.1e-17 90.5 60 80.0
SalBow7G2944 Salvia bowleyana HOM05D002854 ORTHO05D003051 6.1e-17 90.5 67 71.6
CAN.G222.157 Capsicum annuum HOM05D002854 ORTHO05D003051 7.9e-17 90.1 63 74.6
Nitab4.5_0000598g0090 Nicotiana tabacum HOM05D002854 ORTHO05D003051 7.9e-17 90.1 61 80.3
Nitab4.5_0010989g0010 Nicotiana tabacum HOM05D002854 ORTHO05D003051 7.9e-17 90.1 61 80.3
Rhsim04G0044300 Rhododendron simsii HOM05D002854 ORTHO05D003051 7.9e-17 90.1 68 72.1
TAR624G0331 Trochodendron aralioides HOM05D002854 ORTHO05D003051 7.9e-17 90.1 64 75.0
vmacro11619 Vaccinium macrocarpon HOM05D002854 ORTHO05D003051 1.0e-16 89.7 63 74.6
Lsat_1_v5_gn_7_116481 Lactuca sativa HOM05D002854 ORTHO05D003051 1.3e-16 89.4 68 72.1
THA.LOC104817723 Tarenaya hassleriana HOM05D002854 ORTHO05D003051 1.3e-16 89.4 67 74.6
BcaNung02408 Brassica carinata HOM05D002854 ORTHO05D003051 1.8e-16 89.0 66 74.2
Dinv15450 Davidia involucrata HOM05D002854 ORTHO05D003051 1.8e-16 89.0 60 80.0
Rhsim06G0232900 Rhododendron simsii HOM05D002854 ORTHO05D003051 1.8e-16 89.0 63 74.6
Manes.05G202200 Manihot esculenta HOM05D002854 ORTHO05D003051 2.3e-16 88.6 60 78.3
THA.LOC104813459 Tarenaya hassleriana HOM05D002854 ORTHO05D003051 2.3e-16 88.6 75 69.3
BcaC09g50717 Brassica carinata HOM05D002854 ORTHO05D003051 3.0e-16 88.2 66 72.7
Glyma.07G062400 Glycine max HOM05D002854 ORTHO05D003051 3.0e-16 88.2 71 70.4
Lj3g0013242 Lotus japonicus HOM05D002854 ORTHO05D003051 3.0e-16 88.2 66 71.2
Peaxi162Scf00006g00715 Petunia axillaris HOM05D002854 ORTHO05D003051 3.0e-16 88.2 60 80.0
vmacro09612 Vaccinium macrocarpon HOM05D002854 ORTHO05D003051 3.0e-16 88.2 68 72.1
A01p17770 Brassica napus HOM05D002854 ORTHO05D003051 3.9e-16 87.8 66 72.7
BraA01t01732Z Brassica rapa HOM05D002854 ORTHO05D003051 3.9e-16 87.8 66 72.7
Cpa.g.sc12.96 Carica papaya HOM05D002854 ORTHO05D003051 5.1e-16 87.4 64 70.3
COL.COLO4_17407 Corchorus olitorius HOM05D002854 ORTHO05D003051 5.1e-16 87.4 66 69.7
DCAR_013778 Daucus carota HOM05D002854 ORTHO05D003051 5.1e-16 87.4 64 71.9
Duzib213G0668 Durio zibethinus HOM05D002854 ORTHO05D003051 5.1e-16 87.4 65 70.8
Gohir.A04G002600 Gossypium hirsutum HOM05D002854 ORTHO05D003051 5.1e-16 87.4 65 70.8
Gohir.D05G386800 Gossypium hirsutum HOM05D002854 ORTHO05D003051 5.1e-16 87.4 65 70.8
Gorai.009G453500 Gossypium raimondii HOM05D002854 ORTHO05D003051 5.1e-16 87.4 65 70.8
Nitab4.5_0000134g0070 Nicotiana tabacum HOM05D002854 ORTHO05D003051 5.1e-16 87.4 61 77.0
Haze_09882 Corylus avellana HOM05D002854 ORTHO05D003051 6.7e-16 87.0 67 71.6
unitig_21.g20271 Utricularia gibba HOM05D002854 ORTHO05D003051 6.7e-16 87.0 67 67.2
Thhalv10027252m.g Eutrema salsugineum HOM05D002854 ORTHO05D003051 8.7e-16 86.7 64 75.0
Thecc.07G005100 Theobroma cacao HOM05D002854 ORTHO05D003051 8.7e-16 86.7 66 69.7
CANSAT01G0752 Cannabis sativa HOM05D002854 ORTHO05D003051 1.1e-15 86.3 65 70.8
CiPaw.10G167200 Carya illinoinensis HOM05D002854 ORTHO05D003051 1.1e-15 86.3 63 73.0
Psat6g048680 Pisum sativum HOM05D002854 ORTHO05D003051 1.1e-15 86.3 60 76.7
Sabra16G0317500 Salix brachista HOM05D002854 ORTHO05D003051 1.1e-15 86.3 64 70.3
Sp7g24460 Schrenkiella parvula HOM05D002854 ORTHO05D003051 1.1e-15 86.3 64 75.0
GSVIVG01014835001 Vitis vinifera HOM05D002854 ORTHO05D003051 1.1e-15 86.3 61 72.1
C01p22490 Brassica napus HOM05D002854 ORTHO05D003051 1.5e-15 85.9 66 71.2
BolC1t02180H Brassica oleracea HOM05D002854 ORTHO05D003051 1.5e-15 85.9 66 71.2
Cpa.g.sc3.441 Carica papaya HOM05D002854 ORTHO05D003051 1.5e-15 85.9 64 70.3
COL.COLO4_07763 Corchorus olitorius HOM05D002854 ORTHO05D003051 1.5e-15 85.9 66 66.7
Gohir.A02G114500 Gossypium hirsutum HOM05D002854 ORTHO05D003051 1.5e-15 85.9 65 67.7
Phvul.010G105600 Phaseolus vulgaris HOM05D002854 ORTHO05D003051 1.5e-15 85.9 60 76.7
Potri.001G468300 Populus trichocarpa HOM05D002854 ORTHO05D003051 1.5e-15 85.9 64 70.3
TWI38G2036 Tripterygium wilfordii HOM05D002854 ORTHO05D003051 1.5e-15 85.9 64 71.9
VMungo0331G1734 Vigna mungo HOM05D002854 ORTHO05D003051 1.5e-15 85.9 60 76.7
Cfa021906 Carpinus fangiana HOM05D002854 ORTHO05D003051 1.9e-15 85.5 67 70.1
CARHR234090 Cardamine hirsuta HOM05D002854 ORTHO05D003051 2.5e-15 85.1 64 71.9
ClCG09G021620 Citrullus lanatus HOM05D002854 ORTHO05D003051 2.5e-15 85.1 64 73.4
MELO3C013205.2 Cucumis melo HOM05D002854 ORTHO05D003051 3.3e-15 84.7 64 73.4
CsaV3_7G021450 Cucumis sativus L. HOM05D002854 ORTHO05D003051 3.3e-15 84.7 64 73.4
Medtr1g047990 Medicago truncatula HOM05D002854 ORTHO05D003051 4.3e-15 84.3 68 66.2
Nn2g12752 Nelumbo nucifera HOM05D002854 ORTHO05D003051 4.3e-15 84.3 65 66.2
Sabra11G0140100 Salix brachista HOM05D002854 ORTHO05D003051 4.3e-15 84.3 62 72.6
TWI39G1293 Tripterygium wilfordii HOM05D002854 ORTHO05D003051 4.3e-15 84.3 64 71.9
Ca_03488_v3 Cicer arietinum L. HOM05D002854 ORTHO05D003051 5.7e-15 84.0 60 76.7
Ca_28527_v3 Cicer arietinum L. HOM05D002854 ORTHO05D003051 5.7e-15 84.0 60 76.7
Phvul.010G102200 Phaseolus vulgaris HOM05D002854 ORTHO05D003051 5.7e-15 84.0 60 75.0
VMungo0331G0648 Vigna mungo HOM05D002854 ORTHO05D003051 5.7e-15 84.0 60 75.0
Aa31LG5G11870 Aethionema arabicum HOM05D002854 ORTHO05D003051 7.4e-15 83.6 64 70.3
AL7G26420 Arabidopsis lyrata HOM05D002854 ORTHO05D003051 9.7e-15 83.2 66 68.2
Atru.chr2.3884 Acer truncatum HOM05D002854 ORTHO05D003051 1.3e-14 82.8 61 70.5
Carub.0007s1438 Capsella rubella HOM05D002854 ORTHO05D003051 1.3e-14 82.8 64 71.9
Sed0026831 Sechium edule HOM05D002854 ORTHO05D003051 1.3e-14 82.8 64 71.9
Ca_03501_v3 Cicer arietinum L. HOM05D002854 ORTHO05D003051 1.6e-14 82.4 60 75.0
Duzib170G1116 Durio zibethinus HOM05D002854 ORTHO05D003051 1.6e-14 82.4 65 67.7
Gohir.D03G055500 Gossypium hirsutum HOM05D002854 ORTHO05D003051 2.2e-14 82.0 65 64.6
Gorai.003G058300 Gossypium raimondii HOM05D002854 ORTHO05D003051 2.2e-14 82.0 65 64.6
Lsat_1_v5_gn_9_89180 Lactuca sativa HOM05D002854 ORTHO05D003051 2.2e-14 82.0 66 66.7
Prupe.6G029600 Prunus persica HOM05D002854 ORTHO05D003051 2.2e-14 82.0 65 69.2
Ciclev10008763m.g Citrus clementina HOM05D002854 ORTHO05D003051 2.8e-14 81.6 64 68.8
Lalb_Chr04g0259341 Lupinus albus HOM05D002854 ORTHO05D003051 3.7e-14 81.3 68 66.2
TPR.G27227 Trifolium pratense HOM05D002854 ORTHO05D003051 3.7e-14 81.3 68 64.7
HanXRQChr03g0080451 Helianthus annuus HOM05D002854 ORTHO05D003051 4.8e-14 80.9 67 62.7
AT4G26500 Arabidopsis thaliana HOM05D002854 ORTHO05D003051 6.3e-14 80.5 64 68.8
arahy.Tifrunner.gnm1.ann1.542A2E Arachis hypogaea HOM05D002854 ORTHO05D003051 6.3e-14 80.5 60 73.3
arahy.Tifrunner.gnm1.ann1.SCBD8U Arachis hypogaea HOM05D002854 ORTHO05D003051 6.3e-14 80.5 60 73.3
Eucgr.F02016 Eucalyptus grandis HOM05D002854 ORTHO05D003051 6.3e-14 80.5 63 69.8
PSO541G3812 Papaver somniferum HOM05D002854 ORTHO05D003051 6.3e-14 80.5 66 60.6
PSO675G2695 Papaver somniferum HOM05D002854 ORTHO05D003051 6.3e-14 80.5 66 60.6
CDE10G0484 Ceratophyllum demersum HOM05D001287 ORTHO05D001226 8.2e-14 80.1 64 64.1
ECA240G1791 Erigeron canadensis HOM05D000004 ORTHO05D000002 8.2e-14 80.1 64 67.2
MD11G1039000 Malus domestica HOM05D002854 ORTHO05D003051 1.4e-13 79.3 64 67.2
MBI15_g19867_MAGBIO Magnolia biondii HOM05D002854 ORTHO05D003051 1.8e-13 79.0 64 65.6
Sc03g0011680 Simmondsia chinensis HOM05D002854 ORTHO05D003051 3.1e-13 78.2 61 72.1
EL10Ac4g09787 Beta vulgaris HOM05D002854 ORTHO05D003051 9.1e-13 76.6 60 71.7
CDE10G0817 Ceratophyllum demersum HOM05D001287 ORTHO05D001226 9.1e-13 76.6 64 62.5
ECA236G2755 Erigeron canadensis HOM05D002854 ORTHO05D003051 1.2e-12 76.3 67 61.2
AUR62017160 Chenopodium quinoa HOM05D001287 ORTHO05D001226 2.6e-12 75.1 65 64.6
AUR62035644 Chenopodium quinoa HOM05D000722 ORTHO05D000590 3.4e-12 74.7 65 64.6
Mapoly0102s0027 Marchantia polymorpha HOM05D002854 ORTHO05D003051 3.4e-12 74.7 61 63.9
ATR0751G096 Amborella trichopoda HOM05D002854 ORTHO05D003051 5.9e-12 73.9 63 55.6
SEGI_08239 Sequoiadendron giganteum HOM05D002854 ORTHO05D003051 5.9e-12 73.9 64 62.5
SEGI_41013 Sequoiadendron giganteum HOM05D002854 ORTHO05D003051 5.9e-12 73.9 64 62.5
PGR083G1211 Punica granatum HOM05D002854 ORTHO05D003051 7.7e-12 73.6 67 62.7
Ah.03g134530 Amaranthus hybridus HOM05D002854 ORTHO05D003051 1.7e-11 72.4 60 66.7
FAN25G3339 Fragaria x ananassa HOM05D002854 ORTHO05D003051 2.2e-11 72.0 85 51.8
RcHm_v2.0_Chr5g0075351 Rosa chinensis HOM05D002854 ORTHO05D003051 2.2e-11 72.0 62 62.9
FvH4_3g42140 Fragaria vesca HOM05D002854 ORTHO05D003051 2.9e-11 71.6 81 53.1
FAN11G1641 Fragaria x ananassa HOM05D000722 ORTHO05D003051 2.9e-11 71.6 81 53.1
FAN21G1355 Fragaria x ananassa HOM05D000722 ORTHO05D003051 2.9e-11 71.6 81 53.1
Aqoxy7G00765 Aquilegia oxysepala HOM05D002854 ORTHO05D003051 3.8e-11 71.2 61 63.9
FAN16G0314 Fragaria x ananassa HOM05D000722 ORTHO05D003051 3.8e-11 71.2 81 53.1
Pp3c6_3890 Physcomitrium patens HOM05D002854 ORTHO05D003051 6.5e-11 70.5 56 64.3
Pp3c5_25080 Physcomitrium patens HOM05D002854 ORTHO05D003051 2.5e-10 68.6 56 64.3
Dinv40891 Davidia involucrata HOM05D002854 ORTHO05D003051 3.2e-10 68.2 40 87.5
CBR_g26312 Chara braunii HOM05D002854 ORTHO05D003051 2.1e-09 65.5 64 56.2
SHI08463 Sapria himalayana HOM05D002854 ORTHO05D003051 2.1e-09 65.5 68 51.5
BcaC06g32740 Brassica carinata HOM05D002854 ORTHO05D003051 4.6e-09 64.3 59 64.4
MCO11G202 Micromonas commoda HOM05D002854 ORTHO05D003051 6.1e-09 63.9 61 55.7
Zm00001eb333130 Zea mays HOM05D002854 ORTHO05D003051 2.3e-08 62.0 67 44.8
Cre06.g309717 Chlamydomonas reinhardtii HOM05D002854 ORTHO05D003051 6.7e-08 60.5 54 59.3
Os09g0270900 Oryza sativa ssp. japonica HOM05D002854 ORTHO05D003051 7.4e-07 57.0 57 49.1
PRCOL_00000686 Prasinoderma coloniale HOM05D002854 ORTHO05D003051 9.7e-07 56.6 67 47.8
SMO351G0259 Selaginella moellendorffii HOM05D002854 ORTHO05D003051 4.8e-06 54.3 66 43.9
HPP92_020504 Vanilla planifolia HOM05D002854 ORTHO05D003051 6.3e-06 53.9 55 54.5


User provided reference genes

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