Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 6.0e-138 494.2 253 100.0
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 9.0e-94 347.4 253 71.1
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 5.5e-91 338.2 256 71.1
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 2.9e-84 315.8 254 67.3
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.2e-83 312.0 251 65.7
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 4.6e-82 308.5 256 63.7
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 6.1e-82 308.1 249 64.3
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 7.9e-82 307.8 256 63.7
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.8e-81 306.6 245 65.7
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 5.1e-81 305.1 284 62.0
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 2.0e-80 303.1 254 62.6
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.0e-80 303.1 284 61.6
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 4.4e-80 302.0 256 63.3
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 5.7e-80 301.6 248 62.9
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.3e-79 300.4 250 62.8
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 3.7e-79 298.9 257 62.6
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 4.8e-79 298.5 284 59.2
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.1e-78 295.4 245 61.2
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 2.0e-77 293.1 253 60.5
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 2.6e-77 292.7 255 61.2
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 3.4e-77 292.4 248 60.5
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 4.5e-77 292.0 244 62.7
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 5.9e-77 291.6 237 62.9
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.9e-76 289.3 251 61.0
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 2.9e-76 289.3 256 60.5
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 2.9e-76 289.3 244 59.4
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 6.5e-76 288.1 246 61.0
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 6.5e-76 288.1 277 57.8
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 8.5e-76 287.7 256 60.2
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.1e-75 287.3 234 63.2
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.4e-75 287.0 247 59.1
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 1.4e-75 287.0 244 60.2
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.4e-75 287.0 254 59.8
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 3.2e-75 285.8 250 60.4
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 4.2e-75 285.4 245 59.6
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 7.2e-75 284.6 264 55.7
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 7.2e-75 284.6 245 59.2
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 9.4e-75 284.3 228 64.5
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.6e-74 283.5 250 58.8
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 2.7e-74 282.7 247 58.7
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 2.7e-74 282.7 248 58.9
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 2.7e-74 282.7 239 62.3
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 3.6e-74 282.3 244 57.8
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.1e-74 281.6 246 59.3
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 7.9e-74 281.2 245 60.0
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 7.9e-74 281.2 229 62.9
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 1.0e-73 280.8 249 61.0
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.0e-73 280.8 244 58.6
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 1.4e-73 280.4 245 62.0
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.4e-73 280.4 244 61.1
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.8e-73 280.0 256 59.0
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.3e-73 279.6 245 59.6
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 2.3e-73 279.6 246 59.8
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.0e-73 279.3 246 58.9
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 3.9e-73 278.9 234 61.5
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 8.8e-73 277.7 257 58.4
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.5e-72 276.9 247 58.7
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.5e-72 276.9 246 58.1
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 2.6e-72 276.2 235 60.9
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 3.3e-72 275.8 250 60.0
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 4.4e-72 275.4 247 57.9
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 7.4e-72 274.6 229 62.4
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 9.7e-72 274.2 248 58.9
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 1.3e-71 273.9 259 60.6
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 2.8e-71 272.7 257 56.4
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 6.3e-71 271.6 248 58.1
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 1.4e-70 270.4 250 58.0
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 1.8e-70 270.0 251 59.0
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 1.8e-70 270.0 250 57.6
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 2.4e-70 269.6 239 60.7
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 5.3e-70 268.5 257 59.9
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 5.3e-70 268.5 257 55.3
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 1.2e-69 267.3 229 61.1
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 1.2e-69 267.3 253 57.3
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.6e-69 266.2 244 58.2
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 7.7e-69 264.6 242 59.5
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 1.0e-68 264.2 238 58.4
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 1.3e-68 263.8 229 60.7
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.7e-68 263.5 252 56.7
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 2.2e-68 263.1 259 56.0
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.9e-68 262.7 252 57.1
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 8.5e-68 261.2 249 57.0
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.1e-67 260.8 236 57.2
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 1.5e-67 260.4 253 57.3
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 1.9e-67 260.0 235 58.7
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 3.2e-67 259.2 252 55.6
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 4.2e-67 258.8 231 56.7
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 7.2e-67 258.1 262 58.8
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 7.2e-67 258.1 247 58.3
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 9.4e-67 257.7 275 52.0
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 1.2e-66 257.3 262 58.8
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 2.7e-66 256.1 247 56.3
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 3.6e-66 255.8 235 60.4
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 8.0e-66 254.6 244 53.7
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 1.0e-65 254.2 254 53.5
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.4e-65 253.8 245 57.6
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 3.0e-65 252.7 262 55.0
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 8.8e-65 251.1 259 55.6
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 2.6e-64 249.6 257 56.0
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 1.3e-63 247.3 208 61.1
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 1.3e-63 247.3 249 57.0
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 2.8e-63 246.1 251 53.0
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 6.3e-63 245.0 254 55.1
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 6.3e-63 245.0 163 73.6
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 8.2e-63 244.6 249 55.8
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 1.1e-62 244.2 233 57.9
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 1.1e-62 244.2 248 55.2
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 3.1e-62 242.7 248 54.8
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 2.2e-60 236.5 230 57.4
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 3.8e-60 235.7 258 50.8
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.8e-60 235.7 196 65.8
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 8.5e-60 234.6 258 51.2
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 8.5e-60 234.6 258 51.2
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 1.5e-59 233.8 197 61.9
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 2.1e-58 229.9 256 50.0
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 2.1e-58 229.9 256 50.0
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 2.3e-57 226.5 165 69.1
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 3.4e-56 222.6 259 51.4
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 6.3e-55 218.4 238 49.6
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 3.5e-53 212.6 211 55.9
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 5.9e-53 211.8 234 49.1
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 6.5e-52 208.4 192 57.3
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 7.0e-46 188.3 232 46.1
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.5e-45 185.7 253 49.0
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 2.9e-44 183.0 214 49.1
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 1.1e-43 181.0 237 44.7
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 2.5e-43 179.9 172 57.0
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 9.5e-43 177.9 236 43.6
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 3.6e-42 176.0 172 57.6
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 3.0e-41 172.9 239 42.3
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 9.8e-40 167.9 124 65.3
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 1.4e-38 164.1 134 61.2
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 8.6e-36 154.8 202 49.5
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.8e-33 147.1 252 40.1
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 2.6e-32 143.3 245 37.1
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 3.4e-32 142.9 122 63.1
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 8.6e-28 128.3 212 38.7
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.6e-26 124.0 152 49.3
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.8e-26 123.2 88 63.6
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.3e-25 120.2 120 50.8
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 8.9e-25 118.2 120 50.8
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 1.5e-24 117.5 119 50.4
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.3e-23 114.4 89 64.0
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.9e-23 113.2 118 47.5
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 2.7e-21 106.7 121 47.1
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 2.7e-21 106.7 121 47.1
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 2.7e-21 106.7 121 47.1
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 4.9e-15 85.9 199 33.7
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 8.4e-15 85.1 116 50.0
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.4e-14 84.3 268 31.7
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 7.1e-14 82.0 105 42.9
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 1.3e-12 77.8 105 43.8
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 3.1e-09 66.6 44 68.2
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 2.2e-07 60.5 196 28.6
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 2.9e-07 60.1 61 57.4
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 2.9e-07 60.1 127 31.5
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 4.9e-07 59.3 72 47.2
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 1.4e-06 57.8 40 65.0
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 1.9e-06 57.4 133 32.3
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 1.9e-06 57.4 114 32.5
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 1.9e-06 57.4 118 31.4
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 3.2e-06 56.6 205 28.3
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 3.2e-06 56.6 178 27.0
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 3.2e-06 56.6 139 29.5
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 4.2e-06 56.2 127 30.7
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 4.2e-06 56.2 126 31.0
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 5.4e-06 55.8 140 30.0
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 5.4e-06 55.8 140 30.0
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 9.3e-06 55.1 118 30.5
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 9.3e-06 55.1 118 30.5
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 9.3e-06 55.1 126 31.7


User provided reference genes

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