Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G01125 Erythranthe guttata HOM05D004627 ORTHO05D025318 3.3e-128 461.8 251 100.0
Migut.K01028 Erythranthe guttata HOM05D004627 ORTHO05D025318 1.3e-47 194.1 251 55.4
Migut.I00850 Erythranthe guttata HOM05D004627 ORTHO05D005745 9.1e-46 188.0 271 50.9
Migut.G01235 Erythranthe guttata HOM05D004627 ORTHO05D025318 2.0e-37 160.2 107 94.4
SalBow2G3381 Salvia bowleyana HOM05D004627 ORTHO05D005745 2.6e-24 116.7 272 38.6
SGA_v2.0_scaffold5G02627 Striga asiatica HOM05D004627 ORTHO05D005745 2.7e-21 106.7 259 36.7
Solyc03g120310.3 Solanum lycopersicum HOM05D004627 ORTHO05D005745 5.6e-19 99.0 297 32.7
Actinidia01796 Actinidia chinensis HOM05D004627 ORTHO05D005745 3.6e-18 96.3 286 34.6
Nitab4.5_0006801g0030 Nicotiana tabacum HOM05D004627 ORTHO05D005745 4.7e-18 95.9 299 31.1
Lj5A62T32 Lonicera japonica HOM05D004627 ORTHO05D005745 1.0e-17 94.7 230 34.3
Nitab4.5_0003885g0070 Nicotiana tabacum HOM05D004627 ORTHO05D005745 1.8e-17 94.0 294 31.0
Sopen03g039200 Solanum pennellii HOM05D004627 ORTHO05D005745 1.8e-17 94.0 297 32.3
HanXRQChr09g0275371 Helianthus annuus HOM05D004627 ORTHO05D005745 2.3e-17 93.6 226 36.3
CAN.G438.55 Capsicum annuum HOM05D004627 ORTHO05D005745 3.0e-17 93.2 320 29.7
Oeu063961.1 Olea europaea HOM05D004627 ORTHO05D005745 5.2e-17 92.4 379 28.0
Peaxi162Scf00015g00330 Petunia axillaris HOM05D004627 ORTHO05D005745 8.9e-17 91.7 294 32.0
GSVIVG01017132001 Vitis vinifera HOM05D004627 ORTHO05D005745 2.0e-16 90.5 257 34.2
PGSC0003DMG401002640 Solanum tuberosum HOM05D004627 ORTHO05D005745 5.7e-16 89.0 297 31.0
MELO3C012953.2 Cucumis melo HOM05D004627 ORTHO05D005745 1.3e-15 87.8 253 32.0
Sed0021846 Sechium edule HOM05D004627 ORTHO05D005745 2.9e-15 86.7 254 31.9
Lsat_1_v5_gn_4_103420 Lactuca sativa HOM05D004627 ORTHO05D005745 3.7e-15 86.3 228 31.6
ECA232G3019 Erigeron canadensis HOM05D004627 ORTHO05D005745 4.9e-15 85.9 234 34.2
ClCG07G012970 Citrullus lanatus HOM05D004627 ORTHO05D005745 6.4e-15 85.5 256 32.0
Phvul.005G172300 Phaseolus vulgaris HOM05D004627 ORTHO05D005745 1.4e-14 84.3 230 32.6
CSS0033891 Camellia sinensis var. sinensis HOM05D004627 ORTHO05D005745 3.2e-14 83.2 256 33.2
Actinidia15828 Actinidia chinensis HOM05D004627 ORTHO05D005745 7.0e-14 82.0 255 32.2
Oeu033491.1 Olea europaea HOM05D004627 ORTHO05D005745 7.0e-14 82.0 271 28.8
Glyma.15G013400 Glycine max HOM05D004627 ORTHO05D005745 2.7e-13 80.1 233 34.8
Gohir.A05G127500 Gossypium hirsutum HOM05D004627 ORTHO05D005745 2.7e-13 80.1 225 33.8
Gorai.009G132600 Gossypium raimondii HOM05D004627 ORTHO05D005745 2.7e-13 80.1 225 32.4
Gorai.011G077500 Gossypium raimondii HOM05D004627 ORTHO05D005745 2.7e-13 80.1 226 33.2
Thecc.06G083900 Theobroma cacao HOM05D004627 ORTHO05D005745 2.7e-13 80.1 228 34.6
CANSAT56G0577 Cannabis sativa HOM05D004627 ORTHO05D005745 4.6e-13 79.3 259 30.1
CsaV3_3G026250 Cucumis sativus L. HOM05D004627 ORTHO05D005745 4.6e-13 79.3 254 31.5
Dinv30525 Davidia involucrata HOM05D004627 ORTHO05D005745 4.6e-13 79.3 262 30.2
Gohir.A10G079400 Gossypium hirsutum HOM05D004627 ORTHO05D005745 5.9e-13 79.0 230 32.2
Gohir.D10G072100 Gossypium hirsutum HOM05D004627 ORTHO05D005745 5.9e-13 79.0 226 33.2
COL.COLO4_30343 Corchorus olitorius HOM05D004627 ORTHO05D005745 7.8e-13 78.6 228 32.9
Migut.G01234 Erythranthe guttata HOM05D004627 ORTHO05D025318 1.0e-12 78.2 65 67.7
Eucgr.J03011 Eucalyptus grandis HOM05D004627 ORTHO05D005745 1.0e-12 78.2 256 30.5
Cc04_g03560 Coffea canephora HOM05D004627 ORTHO05D005745 1.7e-12 77.4 84 50.0
Nn8g39259 Nelumbo nucifera HOM05D004627 ORTHO05D005745 1.7e-12 77.4 230 32.2
Lj3g0017413 Lotus japonicus HOM05D004627 ORTHO05D005745 2.3e-12 77.0 260 31.9
Cfa002052 Carpinus fangiana HOM05D004627 ORTHO05D005745 3.0e-12 76.6 242 31.4
CiPaw.01G240400 Carya illinoinensis HOM05D004627 ORTHO05D005745 3.0e-12 76.6 256 32.8
Sp3g14260 Schrenkiella parvula HOM05D004627 ORTHO05D005745 3.0e-12 76.6 255 29.4
Prupe.3G073400 Prunus persica HOM05D004627 ORTHO05D005745 3.9e-12 76.3 230 33.9
Sabra01G0147900 Salix brachista HOM05D004627 ORTHO05D005745 3.9e-12 76.3 84 46.4
unitig_21.g20514 Utricularia gibba HOM05D004627 ORTHO05D005745 3.9e-12 76.3 278 33.1
Cpa.g.sc253.2 Carica papaya HOM05D004627 ORTHO05D005745 5.0e-12 75.9 230 31.3
PGR102G1515 Punica granatum HOM05D004627 ORTHO05D005745 5.0e-12 75.9 258 31.0
Manes.11G052170 Manihot esculenta HOM05D004627 ORTHO05D005745 6.6e-12 75.5 233 32.2
TAR624G0215 Trochodendron aralioides HOM05D004627 ORTHO05D005745 6.6e-12 75.5 243 31.3
Atru.chr1.3229 Acer truncatum HOM05D004627 ORTHO05D005745 1.1e-11 74.7 252 33.3
Haze_16452 Corylus avellana HOM05D004627 ORTHO05D005745 1.1e-11 74.7 242 31.0
arahy.Tifrunner.gnm1.ann1.LL8CI2 Arachis hypogaea HOM05D004627 ORTHO05D005745 1.9e-11 73.9 234 31.2
arahy.Tifrunner.gnm1.ann1.ZNJT9X Arachis hypogaea HOM05D004627 ORTHO05D005745 1.9e-11 73.9 234 31.2
Potri.001G179000 Populus trichocarpa HOM05D004627 ORTHO05D005745 1.9e-11 73.9 84 47.6
Sc10g0007450 Simmondsia chinensis HOM05D004627 ORTHO05D005745 3.3e-11 73.2 269 28.3
AUR62016434 Chenopodium quinoa HOM05D004627 ORTHO05D005745 4.3e-11 72.8 84 50.0
DCAR_021317 Daucus carota HOM05D004627 ORTHO05D005745 4.3e-11 72.8 234 28.6
RcHm_v2.0_Chr2g0137571 Rosa chinensis HOM05D004627 ORTHO05D005745 4.3e-11 72.8 221 33.9
Hund00604 Selenicereus undatus HOM05D004627 ORTHO05D005745 4.3e-11 72.8 247 29.6
DCAR_016226 Daucus carota HOM05D004627 ORTHO05D005745 5.6e-11 72.4 247 29.1
FAN05G4220 Fragaria x ananassa HOM05D004627 ORTHO05D005745 5.6e-11 72.4 84 48.8
Aa31LG8G3110 Aethionema arabicum HOM05D004627 ORTHO05D005745 9.5e-11 71.6 262 27.5
AUR62011619 Chenopodium quinoa HOM05D004627 ORTHO05D005745 9.5e-11 71.6 84 48.8
Medtr2g102283 Medicago truncatula HOM05D004627 ORTHO05D005745 9.5e-11 71.6 270 29.6
Nn2g11815 Nelumbo nucifera HOM05D004627 ORTHO05D005745 9.5e-11 71.6 84 46.4
Psat1g004520 Pisum sativum HOM05D004627 ORTHO05D005745 9.5e-11 71.6 260 30.4
FvH4_6g30940 Fragaria vesca HOM05D004627 ORTHO05D005745 1.2e-10 71.2 84 47.6
FAN02G1252 Fragaria x ananassa HOM05D004627 ORTHO05D005745 1.2e-10 71.2 84 47.6
FAN09G4341 Fragaria x ananassa HOM05D004627 ORTHO05D005745 1.2e-10 71.2 84 47.6
FAN14G2812 Fragaria x ananassa HOM05D004627 ORTHO05D005745 1.2e-10 71.2 84 47.6
MD00G1200900 Malus domestica HOM05D004627 ORTHO05D005745 1.6e-10 70.9 84 47.6
MD17G1197500 Malus domestica HOM05D004627 ORTHO05D005745 1.6e-10 70.9 84 47.6
Ca_01108_v3 Cicer arietinum L. HOM05D004627 ORTHO05D005745 2.1e-10 70.5 267 29.2
TWI18G0348 Tripterygium wilfordii HOM05D004627 ORTHO05D005745 2.8e-10 70.1 265 29.4
Rhsim08G0219700 Rhododendron simsii HOM05D004627 ORTHO05D005745 4.7e-10 69.3 234 32.5
EL10Ac9g21984 Beta vulgaris HOM05D004627 ORTHO05D005745 6.2e-10 68.9 84 46.4
Gohir.A02G122400 Gossypium hirsutum HOM05D004627 ORTHO05D005745 1.0e-09 68.2 254 29.9
Glyma.13G360500 Glycine max HOM05D004627 ORTHO05D005745 1.4e-09 67.8 233 30.9
PSO782G5143 Papaver somniferum HOM05D004627 ORTHO05D005745 1.4e-09 67.8 264 30.7
VMungo0331G0981 Vigna mungo HOM05D004627 ORTHO05D005745 1.4e-09 67.8 224 33.9
QL05p025307 Quercus lobata HOM05D004627 ORTHO05D005745 1.8e-09 67.4 227 32.2
CARHR091080 Cardamine hirsuta HOM05D004627 ORTHO05D005745 2.3e-09 67.0 261 27.6
HanXRQChr16g0501021 Helianthus annuus HOM05D004627 ORTHO05D005745 2.3e-09 67.0 84 45.2
PSO063G7267 Papaver somniferum HOM05D004627 ORTHO05D005745 2.3e-09 67.0 264 30.7
AL3G28570 Arabidopsis lyrata HOM05D004627 ORTHO05D005745 3.1e-09 66.6 255 27.5
Medtr4g069840 Medicago truncatula HOM05D004627 ORTHO05D005745 3.1e-09 66.6 84 44.0
Aqoxy7G01825 Aquilegia oxysepala HOM05D004627 ORTHO05D005745 4.0e-09 66.2 84 44.0
Lalb_Chr24g0395771 Lupinus albus HOM05D004627 ORTHO05D005745 4.0e-09 66.2 235 30.6
Gohir.D05G128400 Gossypium hirsutum HOM05D004627 ORTHO05D005745 5.2e-09 65.9 226 29.2
Ciclev10024994m.g Citrus clementina HOM05D004627 ORTHO05D005745 6.8e-09 65.5 228 31.1
Thhalv10020188m.g Eutrema salsugineum HOM05D004627 ORTHO05D005745 6.8e-09 65.5 260 27.7
Gorai.002G058400 Gossypium raimondii HOM05D004627 ORTHO05D005745 1.2e-08 64.7 254 29.5
BcaC05g28923 Brassica carinata HOM05D004627 ORTHO05D005745 2.0e-08 63.9 81 42.0
C05p50500 Brassica napus HOM05D004627 ORTHO05D005745 2.0e-08 63.9 81 42.0
BolC5t33797H Brassica oleracea HOM05D004627 ORTHO05D005745 2.0e-08 63.9 81 42.0
Glyma.07G034500 Glycine max HOM05D004627 ORTHO05D005745 2.0e-08 63.9 81 42.0
Glyma.08G207600 Glycine max HOM05D004627 ORTHO05D005745 2.0e-08 63.9 81 42.0
THA.LOC104818012 Tarenaya hassleriana HOM05D004627 ORTHO05D005745 2.0e-08 63.9 256 28.5
BcaC08g43994 Brassica carinata HOM05D004627 ORTHO05D005745 2.6e-08 63.5 81 39.5
A05p19010 Brassica napus HOM05D004627 ORTHO05D005745 2.6e-08 63.5 81 39.5
BolC6t36577H Brassica oleracea HOM05D004627 ORTHO05D005745 2.6e-08 63.5 81 39.5
BraA05t20798Z Brassica rapa HOM05D004627 ORTHO05D005745 2.6e-08 63.5 81 39.5
CDE02G4618 Ceratophyllum demersum HOM05D004627 ORTHO05D005745 2.6e-08 63.5 238 27.7
Eucgr.F03009 Eucalyptus grandis HOM05D004627 ORTHO05D005745 2.6e-08 63.5 84 44.0
vmacro18927 Vaccinium macrocarpon HOM05D004627 ORTHO05D005745 2.6e-08 63.5 113 37.2
BcaB06g25694 Brassica carinata HOM05D004627 ORTHO05D005745 3.4e-08 63.2 81 42.0
A05p33520 Brassica napus HOM05D004627 ORTHO05D005745 3.4e-08 63.2 81 42.0
BraA05t22173Z Brassica rapa HOM05D004627 ORTHO05D005745 4.4e-08 62.8 81 40.7
Carub.0003s1568 Capsella rubella HOM05D004627 ORTHO05D005745 4.4e-08 62.8 256 27.7
AT3G15940 Arabidopsis thaliana HOM05D004627 ORTHO05D005745 5.8e-08 62.4 81 42.0
TPR.G22966 Trifolium pratense HOM05D004627 ORTHO05D005745 5.8e-08 62.4 84 42.9
Lj3g0022997 Lotus japonicus HOM05D004627 ORTHO05D005745 7.5e-08 62.0 84 41.7
Gohir.D03G074100 Gossypium hirsutum HOM05D004627 ORTHO05D005745 9.8e-08 61.6 253 29.2
BcaB02g10992 Brassica carinata HOM05D004627 ORTHO05D005745 1.3e-07 61.2 256 29.7
Rhsim08G0219000 Rhododendron simsii HOM05D004627 ORTHO05D005745 1.3e-07 61.2 133 31.6
arahy.Tifrunner.gnm1.ann1.4HBL4W Arachis hypogaea HOM05D004627 ORTHO05D005745 2.2e-07 60.5 81 42.0
arahy.Tifrunner.gnm1.ann1.JYD53Y Arachis hypogaea HOM05D004627 ORTHO05D005745 2.2e-07 60.5 81 42.0
AL1G56460 Arabidopsis lyrata HOM05D004627 ORTHO05D005745 2.9e-07 60.1 65 44.6
PGR102G1468 Punica granatum HOM05D004627 ORTHO05D005745 2.9e-07 60.1 80 41.2
Medtr4g011910 Medicago truncatula HOM05D004627 ORTHO05D005745 3.7e-07 59.7 80 40.0
HPP92_003643 Vanilla planifolia HOM05D004627 ORTHO05D005745 4.9e-07 59.3 83 38.6
Rhsim08G0219600 Rhododendron simsii HOM05D004627 ORTHO05D005745 6.4e-07 58.9 82 37.8
ATR0037G016 Amborella trichopoda HOM05D004627 ORTHO05D005745 1.1e-06 58.2 106 33.0
C06p14000 Brassica napus HOM05D004627 ORTHO05D005745 1.1e-06 58.2 258 27.9
TPR.G24156 Trifolium pratense HOM05D004627 ORTHO05D005745 1.1e-06 58.2 84 40.5
Rhsim08G0219100 Rhododendron simsii HOM05D004627 ORTHO05D005745 2.4e-06 57.0 79 39.2
Rhsim08G0219300 Rhododendron simsii HOM05D004627 ORTHO05D005745 2.4e-06 57.0 80 37.5
Rhsim08G0219400 Rhododendron simsii HOM05D004627 ORTHO05D005745 2.4e-06 57.0 79 40.5
vmacro18926 Vaccinium macrocarpon HOM05D004627 ORTHO05D005745 2.4e-06 57.0 191 30.9
CARHR042560 Cardamine hirsuta HOM05D004627 ORTHO05D005745 5.4e-06 55.8 81 35.8
Ca_20401_v3 Cicer arietinum L. HOM05D004627 ORTHO05D005745 7.0e-06 55.5 242 25.6
Ah.01g021200 Amaranthus hybridus HOM05D004627 ORTHO05D005745 9.2e-06 55.1 277 26.4
Thhalv10011288m.g Eutrema salsugineum HOM05D004627 ORTHO05D005745 9.2e-06 55.1 258 27.9
Rhsim08G0219200 Rhododendron simsii HOM05D004627 ORTHO05D025318 9.2e-06 55.1 84 36.9


User provided reference genes

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