Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 4.9e-117 424.5 213 100.0
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 8.1e-104 380.6 214 89.3
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 6.4e-101 370.9 213 88.7
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.7e-98 362.8 215 87.9
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 2.4e-95 352.4 216 84.3
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 5.3e-95 351.3 213 84.5
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 4.5e-94 348.2 213 84.0
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 1.3e-93 346.7 213 83.6
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 8.4e-93 344.0 214 82.2
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 5.4e-92 341.3 215 82.8
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.6e-91 339.7 214 81.8
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.6e-91 339.7 214 84.1
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.1e-91 339.3 215 83.7
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 2.7e-91 339.0 213 79.8
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.6e-91 338.2 214 82.2
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 2.3e-90 335.9 215 81.9
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 3.0e-90 335.5 215 82.3
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 8.7e-90 334.0 213 78.4
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 1.1e-89 333.6 216 80.1
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 2.5e-89 332.4 214 80.8
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.5e-89 332.4 215 80.0
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 3.3e-89 332.0 213 80.3
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 3.3e-89 332.0 215 80.0
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 3.3e-89 332.0 213 81.7
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 5.6e-89 331.3 214 80.8
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 5.6e-89 331.3 215 81.4
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 2.1e-88 329.3 215 81.9
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 2.8e-88 328.9 215 79.1
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 3.7e-88 328.6 214 79.4
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 3.7e-88 328.6 218 80.3
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 3.7e-88 328.6 214 81.3
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 3.7e-88 328.6 215 80.0
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 4.8e-88 328.2 214 78.5
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 6.2e-88 327.8 214 79.9
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 8.1e-88 327.4 214 80.8
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 1.1e-87 327.0 217 77.4
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 1.4e-87 326.6 215 78.6
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.8e-87 326.2 214 78.0
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 4.0e-87 325.1 213 80.8
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 6.9e-87 324.3 215 79.5
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 9.0e-87 323.9 214 79.9
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 2.0e-86 322.8 213 80.3
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 2.6e-86 322.4 214 79.4
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 5.8e-86 321.2 214 79.4
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 5.8e-86 321.2 214 77.6
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 7.6e-86 320.9 212 79.2
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 7.6e-86 320.9 218 78.4
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 1.0e-85 320.5 215 77.2
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.0e-85 320.5 215 77.2
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 1.7e-85 319.7 215 76.7
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 2.2e-85 319.3 215 80.9
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 2.2e-85 319.3 211 78.7
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 2.9e-85 318.9 211 80.1
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 8.4e-85 317.4 225 75.6
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 8.4e-85 317.4 214 78.0
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.1e-84 317.0 215 76.3
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.1e-84 317.0 215 76.3
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.4e-84 316.6 213 77.9
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 1.9e-84 316.2 215 79.1
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 3.2e-84 315.5 211 75.8
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 4.2e-84 315.1 213 76.1
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 5.5e-84 314.7 216 75.5
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 5.5e-84 314.7 213 77.9
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 9.3e-84 313.9 215 75.8
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.1e-83 312.8 213 77.5
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 2.1e-83 312.8 214 75.7
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 3.5e-83 312.0 219 76.3
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 3.5e-83 312.0 217 75.6
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 3.5e-83 312.0 212 77.8
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 4.6e-83 311.6 215 77.2
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 6.0e-83 311.2 216 76.9
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 7.9e-83 310.8 216 76.9
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.0e-82 310.5 213 78.4
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.3e-82 310.1 213 77.9
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 1.8e-82 309.7 223 74.0
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.8e-82 309.7 216 76.4
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 2.3e-82 309.3 215 75.3
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.9e-82 308.5 215 77.2
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 3.9e-82 308.5 212 76.9
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 1.1e-81 307.0 216 74.1
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 2.5e-81 305.8 212 76.9
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.3e-81 305.4 215 76.7
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 3.3e-81 305.4 216 76.9
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 3.3e-81 305.4 215 77.2
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 4.3e-81 305.1 215 74.9
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 7.4e-81 304.3 215 75.3
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 1.3e-80 303.5 216 75.5
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.1e-80 302.8 203 78.8
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 2.1e-80 302.8 213 74.6
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 3.7e-80 302.0 224 73.2
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 4.8e-80 301.6 212 76.4
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 6.2e-80 301.2 214 76.2
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 1.2e-78 297.0 213 73.7
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.2e-78 297.0 203 77.8
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.5e-78 296.6 203 77.3
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.6e-78 294.3 203 77.3
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.6e-78 294.3 203 77.3
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.9e-77 292.4 205 75.6
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 3.8e-77 292.0 195 79.0
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 2.5e-76 289.3 170 83.5
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 4.2e-76 288.5 218 72.9
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 7.2e-76 287.7 160 87.5
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 9.3e-76 287.3 180 81.7
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 9.3e-76 287.3 180 81.7
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 1.2e-75 287.0 179 81.6
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 1.2e-75 287.0 179 81.6
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 1.2e-75 287.0 212 73.1
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 2.1e-75 286.2 216 71.3
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 2.7e-75 285.8 156 88.5
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 3.5e-75 285.4 178 79.8
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 3.5e-75 285.4 214 72.4
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 3.5e-75 285.4 216 71.3
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 4.6e-75 285.0 161 87.6
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 4.6e-75 285.0 205 73.2
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 6.1e-75 284.6 187 80.7
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.0e-74 283.9 214 71.5
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.0e-74 283.9 213 72.8
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.8e-74 283.1 212 70.8
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 3.9e-74 282.0 177 80.8
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 5.1e-74 281.6 216 72.2
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 6.7e-74 281.2 215 70.7
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 8.7e-74 280.8 148 90.5
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 8.7e-74 280.8 214 72.0
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 8.7e-74 280.8 213 71.4
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 4.3e-73 278.5 214 71.0
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 9.7e-73 277.3 191 72.8
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 3.7e-72 275.4 213 69.5
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 8.2e-72 274.2 187 76.5
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 4.1e-71 271.9 191 72.3
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 2.0e-70 269.6 211 70.1
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 2.0e-70 269.6 146 86.3
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.3e-69 266.9 214 70.6
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.3e-69 266.9 214 70.6
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 1.3e-69 266.9 216 69.9
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.2e-69 266.2 213 65.3
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 5.0e-69 265.0 214 66.4
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 6.5e-69 264.6 193 71.0
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.1e-68 263.8 218 67.0
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 7.2e-68 261.2 219 65.8
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 3.6e-67 258.8 150 82.7
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 4.6e-67 258.5 202 69.3
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 1.0e-66 257.3 213 64.3
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 9.4e-60 234.2 181 68.0
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 4.7e-59 231.9 191 64.9
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.8e-58 229.9 143 76.9
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.1e-57 227.3 215 62.8
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 9.7e-57 224.2 172 65.1
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.2e-53 213.0 214 60.7
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.9e-44 183.3 211 52.1
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 2.0e-41 173.3 92 89.1
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 3.1e-31 139.4 74 90.5
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 4.4e-17 92.4 113 54.0
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 1.3e-16 90.9 113 54.9
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 8.3e-16 88.2 113 54.0
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 7.8e-14 81.6 96 51.0


User provided reference genes

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